ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet119c10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473641.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 266 bits (134), Expect = 6e-68 Identities = 332/398 (83%) Strand = Plus / Plus Query: 54 ctgtccaccgtcgcgcaccgcgataccctcccggagggttacacgcggcccgagaacgac 113 ||||||||||||| |||||| || || ||||||||||| || | ||||| ||| |||| Sbjct: 19 ctgtccaccgtcgagcaccgggagacgctcccggagggctatgctcggcctgagtccgac 78 Query: 114 cgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgcgtcg 173 || |||| ||||||||| || | ||||||| ||||||||| |||||||||||||| ||| Sbjct: 79 cggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgcctcg 138 Query: 174 ctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggcttcttc 233 | ||||||| | ||||||||||||| | ||||||||| |||||||||||||||||| Sbjct: 139 ccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggcttcttc 198 Query: 234 cagatcgtaaaccatgggatatcagaggagctgctggagaaggtgatggctgtgggtctg 293 ||| || ||||| |||||| |||||||||| ||||||||||||||||| |||| || Sbjct: 199 caggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttg 258 Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| ||| |||| || ||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 259 gagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatccaag 318 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 || || || || ||||| ||||| |||||||||||||||||||| ||||||||| | || Sbjct: 319 aaaatcagactctctacgagctttaacgtccgcaaggagacagtacacaactggagagat 378 Query: 414 tacctacgccttcattgccacccgttggaggagttcgt 451 || || |||||||| ||||||||| ||||||| ||||| Sbjct: 379 tatctccgccttcactgccacccgctggaggaattcgt 416
>dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E07, full insert sequence Length = 1361 Score = 266 bits (134), Expect = 6e-68 Identities = 332/398 (83%) Strand = Plus / Plus Query: 54 ctgtccaccgtcgcgcaccgcgataccctcccggagggttacacgcggcccgagaacgac 113 ||||||||||||| |||||| || || ||||||||||| || | ||||| ||| |||| Sbjct: 94 ctgtccaccgtcgagcaccgggagacgctcccggagggctatgctcggcctgagtccgac 153 Query: 114 cgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgcgtcg 173 || |||| ||||||||| || | ||||||| ||||||||| |||||||||||||| ||| Sbjct: 154 cggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgcctcg 213 Query: 174 ctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggcttcttc 233 | ||||||| | ||||||||||||| | ||||||||| |||||||||||||||||| Sbjct: 214 ccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggcttcttc 273 Query: 234 cagatcgtaaaccatgggatatcagaggagctgctggagaaggtgatggctgtgggtctg 293 ||| || ||||| |||||| |||||||||| ||||||||||||||||| |||| || Sbjct: 274 caggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttg 333 Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| ||| |||| || ||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 334 gagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatccaag 393 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 || || || || ||||| ||||| |||||||||||||||||||| ||||||||| | || Sbjct: 394 aaaatcagactctctacgagctttaacgtccgcaaggagacagtacacaactggagagat 453 Query: 414 tacctacgccttcattgccacccgttggaggagttcgt 451 || || |||||||| ||||||||| ||||||| ||||| Sbjct: 454 tatctccgccttcactgccacccgctggaggaattcgt 491
>dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C05, full insert sequence Length = 1361 Score = 266 bits (134), Expect = 6e-68 Identities = 332/398 (83%) Strand = Plus / Plus Query: 54 ctgtccaccgtcgcgcaccgcgataccctcccggagggttacacgcggcccgagaacgac 113 ||||||||||||| |||||| || || ||||||||||| || | ||||| ||| |||| Sbjct: 94 ctgtccaccgtcgagcaccgggagacgctcccggagggctatgctcggcctgagtccgac 153 Query: 114 cgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgcgtcg 173 || |||| ||||||||| || | ||||||| ||||||||| |||||||||||||| ||| Sbjct: 154 cggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgcctcg 213 Query: 174 ctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggcttcttc 233 | ||||||| | ||||||||||||| | ||||||||| |||||||||||||||||| Sbjct: 214 ccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggcttcttc 273 Query: 234 cagatcgtaaaccatgggatatcagaggagctgctggagaaggtgatggctgtgggtctg 293 ||| || ||||| |||||| |||||||||| ||||||||||||||||| |||| || Sbjct: 274 caggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttg 333 Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| ||| |||| || ||||| ||||||| |||||| ||||| || ||||||||||| Sbjct: 334 gagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatccaag 393 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 || || || || ||||| ||||| |||||||||||||||||||| ||||||||| | || Sbjct: 394 aaaatcagactctctacgagctttaacgtccgcaaggagacagtacacaactggagagat 453 Query: 414 tacctacgccttcattgccacccgttggaggagttcgt 451 || || |||||||| ||||||||| ||||||| ||||| Sbjct: 454 tatctccgccttcactgccacccgctggaggaattcgt 491
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 161 bits (81), Expect = 2e-36 Identities = 177/209 (84%) Strand = Plus / Plus Query: 243 aaccatgggatatcagaggagctgctggagaaggtgatggctgtgggtctggagtttttc 302 ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||||| ||| Sbjct: 108348 aaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttggagttcttc 108407 Query: 303 cggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagataagg 362 |||| || ||||| ||||||| |||||| ||||| || ||||||||||| || || || Sbjct: 108408 aggctgccgccggaggagaaggagaagctgtattccgatgagccatccaagaaaatcaga 108467 Query: 363 ctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactacctacgc 422 || ||||| ||||| |||||||||||||||||||| ||||||||| | || || || ||| Sbjct: 108468 ctctctacgagctttaacgtccgcaaggagacagtacacaactggagagattatctccgc 108527 Query: 423 cttcattgccacccgttggaggagttcgt 451 ||||| ||||||||| ||||||| ||||| Sbjct: 108528 cttcactgccacccgctggaggaattcgt 108556 Score = 125 bits (63), Expect = 1e-25 Identities = 153/183 (83%) Strand = Plus / Plus Query: 54 ctgtccaccgtcgcgcaccgcgataccctcccggagggttacacgcggcccgagaacgac 113 ||||||||||||| |||||| || || ||||||||||| || | ||||| ||| |||| Sbjct: 107894 ctgtccaccgtcgagcaccgggagacgctcccggagggctatgctcggcctgagtccgac 107953 Query: 114 cgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgcgtcg 173 || |||| ||||||||| || | ||||||| ||||||||| |||||||||||||| ||| Sbjct: 107954 cggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgcctcg 108013 Query: 174 ctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggcttcttc 233 | ||||||| | ||||||||||||| | ||||||||| |||||||||||||||||| Sbjct: 108014 ccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggcttcttc 108073 Query: 234 cag 236 ||| Sbjct: 108074 cag 108076
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 161 bits (81), Expect = 2e-36 Identities = 177/209 (84%) Strand = Plus / Plus Query: 243 aaccatgggatatcagaggagctgctggagaaggtgatggctgtgggtctggagtttttc 302 ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||||| ||| Sbjct: 29305302 aaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttggagttcttc 29305361 Query: 303 cggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagataagg 362 |||| || ||||| ||||||| |||||| ||||| || ||||||||||| || || || Sbjct: 29305362 aggctgccgccggaggagaaggagaagctgtattccgatgagccatccaagaaaatcaga 29305421 Query: 363 ctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactacctacgc 422 || ||||| ||||| |||||||||||||||||||| ||||||||| | || || || ||| Sbjct: 29305422 ctctctacgagctttaacgtccgcaaggagacagtacacaactggagagattatctccgc 29305481 Query: 423 cttcattgccacccgttggaggagttcgt 451 ||||| ||||||||| ||||||| ||||| Sbjct: 29305482 cttcactgccacccgctggaggaattcgt 29305510 Score = 125 bits (63), Expect = 1e-25 Identities = 153/183 (83%) Strand = Plus / Plus Query: 54 ctgtccaccgtcgcgcaccgcgataccctcccggagggttacacgcggcccgagaacgac 113 ||||||||||||| |||||| || || ||||||||||| || | ||||| ||| |||| Sbjct: 29304848 ctgtccaccgtcgagcaccgggagacgctcccggagggctatgctcggcctgagtccgac 29304907 Query: 114 cgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgcgtcg 173 || |||| ||||||||| || | ||||||| ||||||||| |||||||||||||| ||| Sbjct: 29304908 cggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgcctcg 29304967 Query: 174 ctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggcttcttc 233 | ||||||| | ||||||||||||| | ||||||||| |||||||||||||||||| Sbjct: 29304968 ccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggcttcttc 29305027 Query: 234 cag 236 ||| Sbjct: 29305028 cag 29305030
>ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0040D23.1), mRNA Length = 1494 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| |||||||| || |||| ||||||||||||||||| || ||||| || |||| Sbjct: 271 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 330 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 |||||| |||| || || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 331 aagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgat 390 Query: 414 tacctacgcct 424 ||||| ||||| Sbjct: 391 tacctccgcct 401 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 210 gcctgccgcacctacggcttcttccagatcgtaaaccatgg 250 |||||||||||| |||||||||||||| | || |||||||| Sbjct: 187 gcctgccgcacccacggcttcttccaggtggtgaaccatgg 227
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| |||||||| || |||| ||||||||||||||||| || ||||| || |||| Sbjct: 83216 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 83275 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 |||||| |||| || || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 83276 aagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgat 83335 Query: 414 tacctacgcct 424 ||||| ||||| Sbjct: 83336 tacctccgcct 83346 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 210 gcctgccgcacctacggcttcttccag 236 |||||||||||| |||||||||||||| Sbjct: 83036 gcctgccgcacccacggcttcttccag 83062
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| |||||||| || |||| ||||||||||||||||| || ||||| || |||| Sbjct: 7862 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 7921 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 |||||| |||| || || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 7922 aagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgat 7981 Query: 414 tacctacgcct 424 ||||| ||||| Sbjct: 7982 tacctccgcct 7992 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 210 gcctgccgcacctacggcttcttccag 236 |||||||||||| |||||||||||||| Sbjct: 7682 gcctgccgcacccacggcttcttccag 7708
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| |||||||| || |||| ||||||||||||||||| || ||||| || |||| Sbjct: 20367714 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 20367773 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 |||||| |||| || || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 20367774 aagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgat 20367833 Query: 414 tacctacgcct 424 ||||| ||||| Sbjct: 20367834 tacctccgcct 20367844 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 210 gcctgccgcacctacggcttcttccag 236 |||||||||||| |||||||||||||| Sbjct: 20367534 gcctgccgcacccacggcttcttccag 20367560
>dbj|AK061357.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B08, full insert sequence Length = 1004 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| |||||||| || |||| ||||||||||||||||| || ||||| || |||| Sbjct: 386 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 445 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 |||||| |||| || || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 446 aagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgat 505 Query: 414 tacctacgcct 424 ||||| ||||| Sbjct: 506 tacctccgcct 516 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 210 gcctgccgcacctacggcttcttccagatcgtaaaccatgg 250 |||||||||||| |||||||||||||| | || |||||||| Sbjct: 302 gcctgccgcacccacggcttcttccaggtggtgaaccatgg 342
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 294 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 353 ||||| |||||||| || |||| ||||||||||||||||| || ||||| || |||| Sbjct: 20378986 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 20379045 Query: 354 aagataaggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggac 413 |||||| |||| || || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 20379046 aagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgat 20379105 Query: 414 tacctacgcct 424 ||||| ||||| Sbjct: 20379106 tacctccgcct 20379116 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 210 gcctgccgcacctacggcttcttccag 236 |||||||||||| |||||||||||||| Sbjct: 20378806 gcctgccgcacccacggcttcttccag 20378832
>ref|XM_468579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 591 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 300 ttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagata 359 |||||||| || |||| |||||||| |||||||| || ||||| || |||| ||||| Sbjct: 259 ttccggctgccggcggaggagaaggccaagctctactccgacgacccggccaagaagatc 318 Query: 360 aggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactaccta 419 | || || || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 319 cgcctctccaccagcttcaacgtccgcaaggagaccgtgcacaactggcgcgactacctc 378 Query: 420 cgccttcattgccacccg 437 ||||| || ||| ||||| Sbjct: 379 cgcctccactgctacccg 396
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 300 ttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagata 359 |||||||| || |||| |||||||| |||||||| || ||||| || |||| ||||| Sbjct: 1224213 ttccggctgccggcggaggagaaggccaagctctactccgacgacccggccaagaagatc 1224154 Query: 360 aggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactaccta 419 | || || || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1224153 cgcctctccaccagcttcaacgtccgcaaggagaccgtgcacaactggcgcgactacctc 1224094 Query: 420 cgccttcattgccacccg 437 ||||| || ||| ||||| Sbjct: 1224093 cgcctccactgctacccg 1224076
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 300 ttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagata 359 |||||||| || |||| |||||||| |||||||| || ||||| || |||| ||||| Sbjct: 1224211 ttccggctgccggcggaggagaaggccaagctctactccgacgacccggccaagaagatc 1224152 Query: 360 aggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactaccta 419 | || || || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 1224151 cgcctctccaccagcttcaacgtccgcaaggagaccgtgcacaactggcgcgactacctc 1224092 Query: 420 cgccttcattgccacccg 437 ||||| || ||| ||||| Sbjct: 1224091 cgcctccactgctacccg 1224074
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 300 ttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagata 359 |||||||| || |||| |||||||| |||||||| || ||||| || |||| ||||| Sbjct: 29115 ttccggctgccggcggaggagaaggccaagctctactccgacgacccggccaagaagatc 29056 Query: 360 aggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactaccta 419 | || || || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 29055 cgcctctccaccagcttcaacgtccgcaaggagaccgtgcacaactggcgcgactacctc 28996 Query: 420 cgccttcattgccacccg 437 ||||| || ||| ||||| Sbjct: 28995 cgcctccactgctacccg 28978
>dbj|AK104414.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B12, full insert sequence Length = 1268 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 300 ttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagata 359 |||||||| || |||| |||||||| |||||||| || ||||| || |||| ||||| Sbjct: 287 ttccggctgccggcggaggagaaggccaagctctactccgacgacccggccaagaagatc 346 Query: 360 aggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactaccta 419 | || || || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 347 cgcctctccaccagcttcaacgtccgcaaggagaccgtgcacaactggcgcgactacctc 406 Query: 420 cgccttcattgccacccg 437 ||||| || ||| ||||| Sbjct: 407 cgcctccactgctacccg 424
>dbj|AK071416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093A18, full insert sequence Length = 875 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 300 ttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagata 359 |||||||| || |||| |||||||| |||||||| || ||||| || |||| ||||| Sbjct: 290 ttccggctgccggcggaggagaaggccaagctctactccgacgacccggccaagaagatc 349 Query: 360 aggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactaccta 419 | || || || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 350 cgcctctccaccagcttcaacgtccgcaaggagaccgtgcacaactggcgcgactacctc 409 Query: 420 cgccttcattgccacccg 437 ||||| || ||| ||||| Sbjct: 410 cgcctccactgctacccg 427
>dbj|AK068438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154K17, full insert sequence Length = 1285 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 300 ttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaaaagata 359 |||||||| || |||| |||||||| |||||||| || ||||| || |||| ||||| Sbjct: 290 ttccggctgccggcggaggagaaggccaagctctactccgacgacccggccaagaagatc 349 Query: 360 aggctttctacaagcttcaacgtccgcaaggagacagtgcacaactggcgggactaccta 419 | || || || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 350 cgcctctccaccagcttcaacgtccgcaaggagaccgtgcacaactggcgcgactacctc 409 Query: 420 cgccttcattgccacccg 437 ||||| || ||| ||||| Sbjct: 410 cgcctccactgctacccg 427
>gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete sequence Length = 34919 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 agaggagctgctggagaaggtg 278 |||||||||||||||||||||| Sbjct: 23701 agaggagctgctggagaaggtg 23680
>gb|BT009413.1| Triticum aestivum clone wlmk1.pk0003.d7:fis, full insert mRNA sequence Length = 1439 Score = 44.1 bits (22), Expect = 0.39 Identities = 55/66 (83%) Strand = Plus / Plus Query: 372 agcttcaacgtccgcaaggagacagtgcacaactggcgggactacctacgccttcattgc 431 ||||||||||| |||| ||||| ||| ||||||||| |||| ||| ||||| |||||| Sbjct: 436 agcttcaacgtgcgcacggagaaggtgagcaactggcgcgacttcctccgcctgcattgc 495 Query: 432 cacccg 437 ||||| Sbjct: 496 tacccg 501
>gb|U49795.1|CEU49795 Caenorhabditis elegans DNA-binding protein LAG-1 (lag-1) gene, complete cds Length = 16512 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 agaggagctgctggagaaggtg 278 |||||||||||||||||||||| Sbjct: 4679 agaggagctgctggagaaggtg 4658
>emb|CR684812.2|CNS0FRCO Tetraodon nigroviridis full-length cDNA Length = 1265 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agaggagctgctggagaagg 276 |||||||||||||||||||| Sbjct: 960 agaggagctgctggagaagg 979
>emb|CR657739.2|CNS0F6HD Tetraodon nigroviridis full-length cDNA Length = 887 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agaggagctgctggagaagg 276 |||||||||||||||||||| Sbjct: 578 agaggagctgctggagaagg 597
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 gctccctccggaagagaaggcgaagctc 332 |||| ||||||||||| ||||||||||| Sbjct: 1339386 gctcactccggaagagcaggcgaagctc 1339413
>ref|XM_342076.2| PREDICTED: Rattus norvegicus dynein, axonemal, heavy chain 3 (Dnahc3), mRNA Length = 4911 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 agaggagctgctggagaagg 276 |||||||||||||||||||| Sbjct: 1917 agaggagctgctggagaagg 1936
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gctcgccgatgtggtgacgg 141 |||||||||||||||||||| Sbjct: 3398608 gctcgccgatgtggtgacgg 3398589
>emb|Z71670.1|SCYNR055C S.cerevisiae chromosome XIV reading frame ORF YNR055c Length = 7310 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 ctctattctgacgagccatccaaa 353 ||||||| |||||||||||||||| Sbjct: 4560 ctctattgtgacgagccatccaaa 4583
>gb|U45318.1|REU45318 Rhizobium etli PopQ (popQ) gene, partial cds; and LipA (lipA), CycH (cycH), CycJ (cycJ), CycK (cycK), and CycL (cycL) genes, complete cds Length = 5130 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 gctccctccggaagagaaggcgaagctc 332 |||| ||||||||||| ||||||||||| Sbjct: 5023 gctcactccggaagagcaggcgaagctc 5050
>gb|L42348.1|YSCHOL1G Saccharomyces cerevisiae (clone pMW18) HOL1 gene, complete cds Length = 2751 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 ctctattctgacgagccatccaaa 353 ||||||| |||||||||||||||| Sbjct: 1949 ctctattgtgacgagccatccaaa 1926
>gb|AC171502.2| Mus musculus BAC clone RP23-242G4 from chromosome 6, complete sequence Length = 209147 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tggagaaggtgatggctgtg 287 |||||||||||||||||||| Sbjct: 122656 tggagaaggtgatggctgtg 122675 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,859,428 Number of Sequences: 3902068 Number of extensions: 2859428 Number of successful extensions: 55132 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54884 Number of HSP's gapped (non-prelim): 243 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
