>Y1477_PYRKO (Q5JJC3) UPF0103 protein TK1477|
          Length = 291

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 218 SKLPGAVAEALVHYATSNVTPQQTAAEIGVSLRVLQR 328
           S+L GAV   L+HY TS    + T A +G +  V +R
Sbjct: 255 SRLAGAVEAELLHYTTSFEVSRSTEAVVGYASIVFRR 291

>CR054_MOUSE (Q8CB14) Protein C18orf54 homolog precursor|
          Length = 526

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 426 SSSRNTVRPPWLSAAHMGLSCPRPNTRK-LHGERRCSTRS 310
           S S+N + PP++     G  C RP T K ++ E +C + S
Sbjct: 176 SKSKNNIVPPYVYTNINGKKCGRPRTPKPINRENKCVSES 215

>Y1638_PYRFU (Q8U0F2) UPF0103 protein PF1638|
          Length = 292

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 218 SKLPGAVAEALVHYATSNVTPQQTAAEIGVSLRVLQR 328
           SKL GA+   L+HY TS    + T A +G +  V+++
Sbjct: 255 SKLAGAIEAELLHYTTSFEVSRSTDAIVGYASIVMRK 291

>ATPD_TOBAC (P32980) ATP synthase delta chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 248

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 188 GGEGDGDGSCSKLPGAVAEALVHYATSNVTPQQTAAEIGVSLRVLQRRSPCNFLV 352
           GG   G    +   G+ A AL   A SN T +QT A++    ++    +  NF V
Sbjct: 53  GGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFV 107

>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 188 GGEGDGDGSCSKLPGAVAEALVHYATSNVTP---QQTAAEIGVSLRVLQRRSPCNFLVFG 358
           G  GDG+   S LP  V    +     N +P   ++ AA    S   L    P   LVFG
Sbjct: 6   GPLGDGELWQSWLPNHVVFLRLREGVRNQSPAEAEKPAASTSPSCPSLPPHLPTRNLVFG 65

Query: 359 LGHDSPMWAA 388
           LG +  +W A
Sbjct: 66  LGGELFLWDA 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,781,956
Number of Sequences: 219361
Number of extensions: 419981
Number of successful extensions: 1530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)