>PTJC_BACSU (P46317) Lichenan permease IIC component (PTS system|
           lichenan-specific EIIC component) (EIIC-Lic)
          Length = 452

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 154 VWSELGGAVGDLGTYIPIVLALSLASHLDLGTTLIFTALYNFASGVLFGIPMPVQPM 324
           +W  +GG+   L   + + L         LG   +  A++N    ++FG+P+ + PM
Sbjct: 294 IWVNIGGSGATLALVVTMFLRARSKQMKQLGKLAVGPAIFNINEPIIFGMPIVMNPM 350

>VG26_BPMD2 (O64220) Minor tail protein Gp26|
          Length = 836

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
 Frame = +1

Query: 148 TSVWSELGGAVGDLGTYI-PIVLALSLASHLDLGTTLIFTALYNFASGVLFGIPMPVQPM 324
           TSV S LG  +G LGT + PI+ AL+ A          FT L +    +L G    + P+
Sbjct: 360 TSVSSLLGNVLGTLGTQLAPIITALTPA----------FTTLADTLGTMLTGALQALGPV 409

Query: 325 KSIAAVALSSAHLTVPQIMXXXXXXXXXXXXXXXTGLMTRLYRVLP 462
            ++ A  L +A  T  Q +                 L+T L   LP
Sbjct: 410 LTVVAETLGTALTTALQAIQPMLPTLVDSFKQLSETLVTSLGPYLP 455

>SLAP_BACST (P35825) S-layer protein precursor (Surface layer protein)|
          Length = 1228

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 142 LKTSVWSELGGAVGDLGTYIP-IVLALSLASHLDLGT 249
           L T+VW +L G V + GTY P +    + A+ LD  T
Sbjct: 506 LTTNVWGKLAGGVNEAGTYYPGLQFTTTFATKLDEST 542

>YWBA_BACSU (P39584) Putative permease IIC component ywbA (Putative PTS system|
           EIIC component)
          Length = 444

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 154 VWSELGGAVGDLGTYIPIVLALSLASHLDLGTTLIFTALYNFASGVLFGIPMPVQPM 324
           +W  +GG+   L   + +++         LG   I  AL+N    ++FG+P+ + P+
Sbjct: 294 IWINVGGSGATLALVLTMLVRSRSKQMKQLGRLGIGPALFNINEPIIFGMPIVMNPL 350

>SEN34_ASHGO (Q754T3) tRNA-splicing endonuclease subunit SEN34 (EC 3.1.27.9)|
           (tRNA-intron endonuclease SEN34)
          Length = 292

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +1

Query: 112 RRSFLPPSIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLDLGTTLIFTAL----YNF 279
           +R  L  S+ L+T   S++  A    G  + I+  + +A HLDLG  LI+  L    Y  
Sbjct: 131 QRRLLEQSLFLETENCSKMIAAAEPAGLQLAILREM-VAQHLDLGNYLIYRYLREEQYFL 189

Query: 280 ASGVLFG---IPMPVQPMKSIAAVALSSA 357
           ++G  FG   +  P  P++  + +A+  A
Sbjct: 190 SAGGRFGARYVAYPGDPLRYHSHMAVQPA 218

>HIS5_RALSO (Q8XV83) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 217

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 156 DGRLEPDGRRQETPPVRLAREQRVAGGGCHGW--LHDSRVLLLWVG 25
           DGRL+PDG R + P +              GW  +H SR   LW G
Sbjct: 118 DGRLQPDGSRYKVPQM--------------GWNRVHQSRTHALWAG 149

>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)|
          Length = 1321

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
 Frame = -3

Query: 183 PHRAAQLRPDGRLEPDGRRQETPPVRLAREQRVAGGG------CHGWLHDSRVLLLWVGA 22
           P +  Q R    L P G     PP  + R   V GGG            DS  + +W G+
Sbjct: 682 PKQILQPRLAAALPPSGAAVPAPPSGVGRTFPVNGGGYKASSPAESSPEDSGYMRMWCGS 741

Query: 21  ELSIE 7
           +LS+E
Sbjct: 742 KLSME 746

>APA_MYCLE (P46842) Alanine and proline-rich secreted protein apa precursor|
           (Antigen 43L) (Fibronectin attachment protein) (FAP-L)
          Length = 287

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 52  VVQPAMASSAGDPLLPGEPHRRSFLPPSIRLKTSVWSELG---GAVGDLGTYIPIVLALS 222
           ++ P   +       PG+P+  S L P+     +V    G    AVG     +P     S
Sbjct: 59  IITPLPGAPVSSEAQPGDPNAPS-LDPNAPYPLAVDPNAGRITNAVGGFSFVLPAGWVES 117

Query: 223 LASHLDLGTTLIFTAL 270
            ASHLD G+ L+  A+
Sbjct: 118 EASHLDYGSVLLSKAI 133

>Y2083_MYCTU (Q10691) Hypothetical protein Rv2083/MT2145|
          Length = 314

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +1

Query: 13  TQFSSHPQQ*DSAVVQPAMASSAGDPLLPGEPHRRSFLPPSIRLKTSVWSELGGAVGDL 189
           T   SHP+Q  +A  +P     A  P+ PG P     L     L T+  ++LGGA  D+
Sbjct: 2   TSIESHPEQYWAAAGRPGPVPLALGPVHPGGPTLIDLLMALFGLSTN--ADLGGANADI 58

>PTQC_ECOLI (P17334) N,N'-diacetylchitobiose permease IIC component (PTS system|
           N,N'-diacetylchitobiose-specific EIIC component)
           (EIIC-Chb)
          Length = 452

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 166 LGGAVGDLGTYIPIVLALSLASHLDLGTTLIFTALYNFASGVLFGIPMPVQPMKSIAAV 342
           LGG+   LG  + I +A   A +  +    + + ++     +LFG+P+ + P+  I  V
Sbjct: 304 LGGSGATLGLILAIFIASRRADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFV 362

>SECD_SYNY3 (Q55610) Protein-export membrane protein secD|
          Length = 472

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 223 LASHLDLGTTLIFTALYNFASGVLFGIPMPVQPMKSIAAVALSSAHLTVPQI 378
           +A  + L   L+F A+Y    G++  I + +  + ++AA AL    LT+P I
Sbjct: 299 VAGFVGLVLVLVFMAVYYRLPGIVADISLMIYAVLTLAAFALVGVTLTLPGI 350

>NANT_YERPS (Q668K2) Putative sialic acid transporter (Sialic acid permease)|
          Length = 510

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 178 VGDLGTYIPIVLALSLASHLDLGTTL-IFTALYNFASGVLFGIPMP 312
           VG LG  +  +L  S+A HL LGT L   +    F   +L G  MP
Sbjct: 427 VGALGGALAPILGASIAQHLSLGTALGSLSFSLTFVVILLIGFDMP 472

>NANT_YERPE (Q8ZCH3) Putative sialic acid transporter (Sialic acid permease)|
          Length = 510

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 178 VGDLGTYIPIVLALSLASHLDLGTTL-IFTALYNFASGVLFGIPMP 312
           VG LG  +  +L  S+A HL LGT L   +    F   +L G  MP
Sbjct: 427 VGALGGALAPILGASIAQHLSLGTALGSLSFSLTFVVILLIGFDMP 472

>IORB_ARCFU (O28249) Indolepyruvate oxidoreductase subunit iorB (EC 1.2.7.8)|
           (IOR) (Indolepyruvate ferredoxin oxidoreductase beta
           subunit)
          Length = 201

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +1

Query: 115 RSFLPPSIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLDLGTTLIFTALYNFASGVL 294
           R  +PPS+   T+ + EL   +G+L    P V+ ++ +   +   +++ T +     G+L
Sbjct: 96  RKIIPPSVTAGTAKYPELDEIIGELRKVTPRVIPVNASEIAEKAGSVLATNV--VVVGML 153

Query: 295 FG 300
           FG
Sbjct: 154 FG 155

>LEU1_THEMA (Q9WZ23) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 513

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 440 VMSPVAPRKRRMAATAIXAPMICGTVRCAEESATAAMD 327
           V SPV     +  A+A+  P++ G  RC E+   AA +
Sbjct: 48  VSSPVQFEAVKRVASAVQKPIVVGLARCVEKDIDAAYE 85

>DEOD_BACSU (O34925) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)|
           (PNP) (Purine nucleoside phosphorylase II) (PU-NPase II)
          Length = 233

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 91  LLPGEPHRRSFLPPSIRLKTSVWSELGGAVGDLGTY 198
           LLPG+P R  F+  +       ++E+ G  G  GTY
Sbjct: 17  LLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTY 52

>NANT2_ECOL6 (Q8FDU9) Putative sialic acid transporter 2 (Sialic acid permease|
           2)
          Length = 502

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 178 VGDLGTYIPIVLALSLASHLDLGTTLIFTA-LYNFASGVLFGIPMP 312
           VG LG     +L   +ASH  LGT +   A +  F   VL G  MP
Sbjct: 423 VGSLGGACAPILGAVVASHTSLGTAMCSLAFILTFVVLVLIGFDMP 468

>ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2925

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 195  GAQVPHRAAQLRPDGRLEPDGRRQETPPVRLAREQRV 85
            GA+VP R  +L+  GRLE D   Q+ PP  +  E RV
Sbjct: 2524 GARVPLR--KLQTGGRLEQDAATQKLPPPTMNIEIRV 2558

>DEOD_OCEIH (Q8ENY0) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)|
           (PNP)
          Length = 235

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 91  LLPGEPHRRSFLPPSIRLKTSVWSELGGAVGDLGTY 198
           LLPG+P R  ++  +   +  +++E+ G  G  GTY
Sbjct: 17  LLPGDPLRAKYIAETFLEEPKLYNEVRGMYGYTGTY 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,627,380
Number of Sequences: 219361
Number of extensions: 768077
Number of successful extensions: 3214
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3214
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)