ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet119a09 |
|---|---|
| Clone Library Name | barley_pub |
>PRA_MYCTU (O53426) Proline-rich antigen homolog| Length = 240 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -3 Query: 135 PGPAGGFDPRAYAVDAMEDH---PPPDTRHGHDPRPIPPAG 22 PGP+GG +P A + PPP + G+ P P PP G Sbjct: 18 PGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGG 58
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 138 SPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQR 16 +P PA P A ++ ++HPP R G + P PP GQ+ Sbjct: 603 APPPAQQLPPSATTLEPEKNHPPAADRAGTEISPSPPFGQQ 643
>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)| Length = 951 Score = 30.8 bits (68), Expect = 1.4 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Frame = -3 Query: 279 KTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPR-- 106 K E +RR KE R R QPA +P G + +L SR SPG +PR Sbjct: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTP----SGILTPHALGSR---NSPGCQVASNPRQA 460 Query: 105 AYAVDAMEDHPP---PDTRHGHDPRPIPPAGQRKR 10 AY + + P P+T D P P G +++ Sbjct: 461 AYEMRMQRNSSPSISPNTSFASDGSPSPLGGIKRK 495
>XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-like protein)| (DHP protein) Length = 950 Score = 30.8 bits (68), Expect = 1.4 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Frame = -3 Query: 279 KTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPR-- 106 K E +RR KE R R QPA +P G + +L SR SPG +PR Sbjct: 408 KDDEDSFRRRQKEKRKRMKRDQPAFTP----SGILTPHALGSR---NSPGSQVASNPRQA 460 Query: 105 AYAVDAMEDHPP---PDTRHGHDPRPIPPAGQRKR 10 AY + + P P+T D P P G +++ Sbjct: 461 AYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRK 495
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 30.4 bits (67), Expect = 1.8 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = -3 Query: 153 RGCLRSPGPAGGFDPRAYAVDAMEDHPPP--DTRHGHDPRPIPPAGQRKRRNK 1 +G + SPGPAG P + H PP D GH P PI P G R R + Sbjct: 1126 QGAIGSPGPAGPRGP-------VGPHGPPGKDGTSGH-PGPIGPPGPRGNRGE 1170
>IF2_BDEBA (Q6MMS6) Translation initiation factor IF-2| Length = 975 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = -3 Query: 213 PATSPIPSFLGSILLSSLASRGCLRSPG--PAGGFDPRA 103 PA++P + +G + LS + S+ R G PAGGF PRA Sbjct: 221 PASAPKRNIIGRMDLSRVQSQAPQRPQGERPAGGFTPRA 259
>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6| Length = 278 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = -3 Query: 156 SRGCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPA 25 S G +PGPAG P P PD GHD +P P A Sbjct: 224 SAGAPGAPGPAGA--PGVDGQPGANGQPGPDGEQGHDGQPGPDA 265
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 30.0 bits (66), Expect = 2.3 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = -3 Query: 153 RGCLRSPGPAGGFDPRAYAVDAMEDHPPP--DTRHGHDPRPIPPAGQRKRRNK 1 +G + SPGPAG P + H PP D GH P PI P G R R + Sbjct: 1126 QGAVGSPGPAGPRGP-------VGPHGPPGKDGSSGH-PGPIGPPGPRGNRGE 1170
>Y1491_HELPY (O26024) Putative phosphate permease HP1491| Length = 533 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +2 Query: 155 LAKELSRIEPKKLGIGLVAGCCLALLTYISFARLFAIYSPVFEST 289 + K L R+ I L GC LALL +I F R +P E++ Sbjct: 238 IVKVLKRLYALNFEIQLACGCILALLIFILFKRFVLKKAPQLENS 282
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -3 Query: 141 RSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPR-PIPPAGQRK 13 RSP P R Y+ D+ PPP R+ D R P PP +R+ Sbjct: 760 RSPSPP---PRRRYSGDSRSPSPPPRRRYADDSRSPSPPPHRRR 800 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = -3 Query: 150 GCLRSPGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQRKRR 7 G RSP P R YA D+ PPP R D P R+RR Sbjct: 772 GDSRSPSPP---PRRRYADDSRSPSPPPHRRRYSDDSRSPSPPPRRRR 816
>ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alpha-10 subunit| precursor (Nicotinic acetylcholine receptor subunit alpha 10) (NACHR alpha 10) Length = 447 Score = 29.3 bits (64), Expect = 3.9 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -3 Query: 213 PATSPIPSFLGSILLSSLASRGCLRSPG-PAGGFDPRAYAVDAMEDHPPPDTRHG--HDP 43 P P+P++ +LL LA C+R G P G P A PPP + G H+P Sbjct: 327 PNAHPVPAWARVLLLGHLAKGLCVRERGEPCGQSKPLESAPSL---QPPPASPAGPCHEP 383 Query: 42 R 40 R Sbjct: 384 R 384
>SP39_BRUSU (Q8FVX5) Probable sugar-binding periplasmic protein precursor| Length = 421 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 260 AIYSPVFESTSMVMKNAPPASTAVPST 340 AI SP F+S V+K + PA T VP T Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352
>SP39_BRUME (Q8YCE2) Probable sugar-binding periplasmic protein precursor| Length = 421 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 260 AIYSPVFESTSMVMKNAPPASTAVPST 340 AI SP F+S V+K + PA T VP T Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352
>SP39_BRUAB (O06875) Probable sugar-binding periplasmic protein precursor| (Immunogenic 39 kDa protein) (P39) Length = 421 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 260 AIYSPVFESTSMVMKNAPPASTAVPST 340 AI SP F+S V+K + PA T VP T Sbjct: 326 AIESPAFQSAFNVVKGSAPARTDVPDT 352
>HXADA_BRARE (Q6W990) Homeobox protein Hox-A13a| Length = 310 Score = 28.9 bits (63), Expect = 5.2 Identities = 19/75 (25%), Positives = 34/75 (45%) Frame = -3 Query: 294 MDVLSKTGE*MAKRRAKEM*VRRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGF 115 MD + TGE RAKE + + P+PS+L ++ ++ +G + Sbjct: 135 MDTSASTGEDYTSSRAKEFALYSSYASSPYQPVPSYLDVPVVQAI-----------SGPW 183 Query: 114 DPRAYAVDAMEDHPP 70 +PR ++ ME + P Sbjct: 184 EPRHESLLPMESYQP 198
>FXR2_MOUSE (Q9WVR4) Fragile X mental retardation syndrome-related protein 2| Length = 673 Score = 28.9 bits (63), Expect = 5.2 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Frame = -3 Query: 231 RRARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRAYAV-DAMEDHPPPDTRH 55 RR R P P P + +S + L+ P D Y++ D E PP D+ Sbjct: 483 RRRRLGPGKGPPPVPRPTSRYNSSSISSVLKDP------DSNPYSLLDTSEPEPPVDSEP 536 Query: 54 GHDPRPIPPAGQRKRRNK 1 G P PA R+RR++ Sbjct: 537 GEPP----PASARRRRSR 550
>YE91_HELPJ (Q9ZJC8) Putative phosphate permease jhp_1384| Length = 533 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +2 Query: 155 LAKELSRIEPKKLGIGLVAGCCLALLTYISFARLFAIYSPVFEST 289 + K L R+ I L GC LALL +I F R +P E++ Sbjct: 238 IVKVLKRLYAVGFEIQLACGCVLALLIFILFKRFVLKKAPQLENS 282
>AA2AR_CAVPO (P46616) Adenosine A2a receptor| Length = 409 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +2 Query: 131 PGERRQPRLAKELSRIEPKKLGIGLVAGCCLAL 229 PGER + L KE+ + + +GL A CCL L Sbjct: 214 PGERTRSTLQKEVHPAKSLAIIVGLFALCCLPL 246
>SP39_RHIME (Q92KZ7) Probable sugar-binding periplasmic protein precursor| Length = 414 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 260 AIYSPVFESTSMVMKNAPPASTAVPST 340 AI SP F+S V+K + PA T VP T Sbjct: 319 AIESPAFQSAFNVVKGSVPARTDVPDT 345
>OPSD_SEPOF (O16005) Rhodopsin| Length = 464 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -3 Query: 129 PAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQ 19 P GG+ P+ Y PPP + G+ P+ PP Q Sbjct: 395 PQGGYPPQGY--------PPPPAQGGYPPQGYPPPPQ 423
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 28.9 bits (63), Expect = 5.2 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Frame = -3 Query: 207 TSPIPSFLG----SILLSSLASRGCLRSPGPAGGFDPR-AYAVDAMEDHPPPDTRHGHDP 43 TSP P+ +G ++ L + G P A P A A AM PPP + P Sbjct: 3153 TSPKPNLMGLPSTTVPSPGLPTSGLPNKPSSASLSSPTPAQATMAMAPQPPPQPQQPQPP 3212 Query: 42 ---RPIPPAGQR 16 P PPA Q+ Sbjct: 3213 VQQPPPPPAAQQ 3224
>RECO_PROAC (Q6A969) DNA repair protein recO (Recombination protein O)| Length = 246 Score = 28.9 bits (63), Expect = 5.2 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Frame = -3 Query: 201 PIPSFLGSILLSSLASRG-------CLR--SPGPAGGFDPRAYAVDAMEDHPPPDTRHGH 49 P L S LL SL++ G C+R +PGP GF P V + + PP T H H Sbjct: 135 PPEMVLDSYLLRSLSASGYAPDLVDCVRCGTPGPHQGFSPSLGGVVCI-NCQPPGTPHPH 193 Query: 48 D 46 + Sbjct: 194 E 194
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 28.9 bits (63), Expect = 5.2 Identities = 22/80 (27%), Positives = 26/80 (32%), Gaps = 22/80 (27%) Frame = -3 Query: 213 PATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRAYAVDAMED--------------- 79 P P+P G + +S R P P+GG PR DA D Sbjct: 304 PVVGPVPLERGQMQISD-PRPPMPRGPMPSGGIPPRGLLGDAPNDPRGGTLLSVTGEVEP 362 Query: 78 -------HPPPDTRHGHDPR 40 H P HGHD R Sbjct: 363 RGYMGPPHQGPPMHHGHDNR 382
>GAG_MLVDE (P29168) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 535 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -3 Query: 135 PGPAGGFDPRAYAV--DAMEDHPPPDTRHGHDPRPIP 31 PGP G D Y V +A+ HPPP + P+P P Sbjct: 70 PGPHGHPDQVPYIVTWEALAYHPPPWVKPFVSPKPFP 106
>GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 528 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -3 Query: 135 PGPAGGFDPRAYAV--DAMEDHPPPDTRHGHDPRPIP 31 PGP G D Y V +A+ HPPP + P+P P Sbjct: 70 PGPHGHPDQVPYIVTWEALVYHPPPWVKPFVSPKPFP 106
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = -3 Query: 129 PAGGFDPRAYAVDAMEDHPPPDTRHGHDPRP 37 P+GG P P P +RHGH P P Sbjct: 151 PSGGHTPPRGQHPPSHRRPSPPSRHGHPPPP 181
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -3 Query: 135 PGPAGGFDPRAYAVDAMEDHPPPDTRHGHDPRPIPPAGQ 19 PG G + A + + + PP G PRP PP GQ Sbjct: 27 PGSQGNPNSLAANMQNLNINRPPPPMPGSGPRPSPPFGQ 65
>VGLH_HHV1E (P08356) Glycoprotein H precursor| Length = 838 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -3 Query: 225 ARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRA 103 AR+ P T + L + + LA+RG LRSPG F P A Sbjct: 201 ARRHPTTELDITHLHNASTTWLATRGLLRSPGRYVYFSPSA 241
>VGLH_HHV11 (P06477) Glycoprotein H precursor| Length = 838 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -3 Query: 225 ARQQPATSPIPSFLGSILLSSLASRGCLRSPGPAGGFDPRA 103 AR+ P T + L + + LA+RG LRSPG F P A Sbjct: 201 ARRHPTTELDITHLHNASTTWLATRGLLRSPGRYVYFSPSA 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,086,110 Number of Sequences: 219361 Number of extensions: 716860 Number of successful extensions: 3109 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3086 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
