>gb|AY104432.1| Zea mays PCO120449 mRNA sequence
          Length = 2218

 Score =  168 bits (85), Expect = 1e-38
 Identities = 256/313 (81%)
 Strand = Plus / Plus

                                                                       
Query: 128 tgggggaggagaagctgatcatccggccggagaaggtgcggttcatcgacatcctgtccc 187
           |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||  
Sbjct: 380 tgggggaggagaagctgatcatccggccggagaaggtgcggttcatagacgtgctgtcga 439

                                                                       
Query: 188 tgctgatcctgcgccggcccatcaccagctacgccttcgtcgacgccggcgaccagacgg 247
           ||||| ||||| | || ||||||||||||||||| ||||| || |||||||||| ||| |
Sbjct: 440 tgctgctcctgaggcgccccatcaccagctacgcattcgtggaggccggcgaccggaccg 499

                                                                       
Query: 248 cccgtgacgtcggcatcacgccgggcgacatcttcgtcgcgctcacccagatcatccaga 307
           ||   ||| | |||| |||||| ||||||    ||||||||||||| ||| |||||||||
Sbjct: 500 ccgccgacctgggcagcacgcccggcgactggctcgtcgcgctcacgcaggtcatccaga 559

                                                                       
Query: 308 aggccctcgctgctgcctactacccggcgaagataatcggggccatcgtcgagctgctcc 367
           |||| ||||| |  ||||||||||||||     |  |||| ||| |||||||| | ||||
Sbjct: 560 aggcgctcgccggcgcctactacccggctctcgtggtcggcgccgtcgtcgagttcctcc 619

                                                                       
Query: 368 tcaacttcttcgccctcaacggaggcctgctcggcatcgtatggaacgtcatcagattta 427
           |||||||| |||| ||||||   ||| | ||||||||| |    ||| || |||||| ||
Sbjct: 620 tcaacttcgtcgcgctcaacaatggcatactcggcatctttctcaacctcttcagatgta 679

                        
Query: 428 agctggtgatccc 440
           |||||||||||||
Sbjct: 680 agctggtgatccc 692

>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0059G01, complete sequence
          Length = 141661

 Score =  121 bits (61), Expect = 2e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                        
Query: 128  tgggggaggagaagctgatcatccggccggagaaggtgcggttcatcgacatcctgtccc 187
            ||||||||||||||||||||||   | ||||||||||| ||||||||||||||||||| |
Sbjct: 1182 tgggggaggagaagctgatcataatgtcggagaaggtgaggttcatcgacatcctgtcgc 1123

                                                                 
Query: 188  tgctgatcctgcgccggcccatcaccagctacgccttcgtcgacgccggcgac 240
            ||||| |||| || ||||| ||||||||||||  |||||| ||||||||||||
Sbjct: 1122 tgctgctcctccggcggccgatcaccagctaccacttcgtggacgccggcgac 1070



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 283  gtcgcgctcacccagatcatccagaaggccctcgctgctgcctactacccggcgaagata 342
            ||||| |||||| |||| ||||||||||| ||||| || || ||||||||||| |||   
Sbjct: 1018 gtcgccctcaccgagataatccagaaggcgctcgccgccgcatactacccggccaagtac 959

                                                                        
Query: 343  atcggggccatcgtcgagctgctcctcaacttcttcgccctcaacggaggcctgctcggc 402
             |||| |||  ||||||| |  ||||||||||| || |||||||||| ||| |  |||||
Sbjct: 958  ctcggcgccgccgtcgagttcttcctcaacttcgtctccctcaacggcggcgtcatcggc 899

                        
Query: 403  atcgtatggaac 414
            ||| | ||||||
Sbjct: 898  atcctctggaac 887

>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16,
              complete sequence
          Length = 159525

 Score =  121 bits (61), Expect = 2e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                          
Query: 128    tgggggaggagaagctgatcatccggccggagaaggtgcggttcatcgacatcctgtccc 187
              ||||||||||||||||||||||   | ||||||||||| ||||||||||||||||||| |
Sbjct: 107954 tgggggaggagaagctgatcataatgtcggagaaggtgaggttcatcgacatcctgtcgc 107895

                                                                   
Query: 188    tgctgatcctgcgccggcccatcaccagctacgccttcgtcgacgccggcgac 240
              ||||| |||| || ||||| ||||||||||||  |||||| ||||||||||||
Sbjct: 107894 tgctgctcctccggcggccgatcaccagctaccacttcgtggacgccggcgac 107842



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                          
Query: 283    gtcgcgctcacccagatcatccagaaggccctcgctgctgcctactacccggcgaagata 342
              ||||| |||||| |||| ||||||||||| ||||| || || ||||||||||| |||   
Sbjct: 107790 gtcgccctcaccgagataatccagaaggcgctcgccgccgcatactacccggccaagtac 107731

                                                                          
Query: 343    atcggggccatcgtcgagctgctcctcaacttcttcgccctcaacggaggcctgctcggc 402
               |||| |||  ||||||| |  ||||||||||| || |||||||||| ||| |  |||||
Sbjct: 107730 ctcggcgccgccgtcgagttcttcctcaacttcgtctccctcaacggcggcgtcatcggc 107671

                          
Query: 403    atcgtatggaac 414
              ||| | ||||||
Sbjct: 107670 atcctctggaac 107659

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  121 bits (61), Expect = 2e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                           
Query: 128     tgggggaggagaagctgatcatccggccggagaaggtgcggttcatcgacatcctgtccc 187
               ||||||||||||||||||||||   | ||||||||||| ||||||||||||||||||| |
Sbjct: 3013938 tgggggaggagaagctgatcataatgtcggagaaggtgaggttcatcgacatcctgtcgc 3013879

                                                                    
Query: 188     tgctgatcctgcgccggcccatcaccagctacgccttcgtcgacgccggcgac 240
               ||||| |||| || ||||| ||||||||||||  |||||| ||||||||||||
Sbjct: 3013878 tgctgctcctccggcggccgatcaccagctaccacttcgtggacgccggcgac 3013826



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                           
Query: 283     gtcgcgctcacccagatcatccagaaggccctcgctgctgcctactacccggcgaagata 342
               ||||| |||||| |||| ||||||||||| ||||| || || ||||||||||| |||   
Sbjct: 3013774 gtcgccctcaccgagataatccagaaggcgctcgccgccgcatactacccggccaagtac 3013715

                                                                           
Query: 343     atcggggccatcgtcgagctgctcctcaacttcttcgccctcaacggaggcctgctcggc 402
                |||| |||  ||||||| |  ||||||||||| || |||||||||| ||| |  |||||
Sbjct: 3013714 ctcggcgccgccgtcgagttcttcctcaacttcgtctccctcaacggcggcgtcatcggc 3013655

                           
Query: 403     atcgtatggaac 414
               ||| | ||||||
Sbjct: 3013654 atcctctggaac 3013643

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 219    cgccttcgtcgacgccggcgaccaga 244
              |||||||||| |||||||||||||||
Sbjct: 682612 cgccttcgtctacgccggcgaccaga 682587

>ref|XM_849757.1| PREDICTED: Canis familiaris similar to calpain 8 (LOC612029), mRNA
          Length = 2487

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 294 ccagatcatccagaaggccctc 315
           ||||||||||||||||||||||
Sbjct: 954 ccagatcatccagaaggccctc 975

>gb|AE012235.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 143
            of 460 of the complete genome
          Length = 8650

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 222  cttcgtcgacgccggcgaccagacgg 247
            |||||||||||||||||| |||||||
Sbjct: 4543 cttcgtcgacgccggcgatcagacgg 4568

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 222     cttcgtcgacgccggcgaccagacgg 247
               |||||||||||||||||| |||||||
Sbjct: 3459875 cttcgtcgacgccggcgatcagacgg 3459850

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 268    ccgggcgacatcttcgtcgcgctca 292
              ||||||||| |||||||||||||||
Sbjct: 398031 ccgggcgacctcttcgtcgcgctca 398055

>gb|CP000004.1| Gluconobacter oxydans 621H plasmid pGOX1, complete sequence
          Length = 163186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 100    ggatcagctgctgctggtcgt 120
              |||||||||||||||||||||
Sbjct: 148819 ggatcagctgctgctggtcgt 148839

>emb|AJ871361.1| Nyctotherus ovalis partial gene for MIDAS-containing protein
           midasin
          Length = 1229

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 365 tcctcaacttcttcgccctca 385
           |||||||||||||||||||||
Sbjct: 689 tcctcaacttcttcgccctca 709

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 96      agccggatcagctgctgctgg 116
               |||||||||||||||||||||
Sbjct: 3318526 agccggatcagctgctgctgg 3318546



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     acgccttcgtcgacgccggc 237
               ||||||||||||||||||||
Sbjct: 2917776 acgccttcgtcgacgccggc 2917795

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 216     ctacgccttcgtcgacgccg 235
               ||||||||||||||||||||
Sbjct: 4751289 ctacgccttcgtcgacgccg 4751308

>gb|AC164431.2| Mus musculus BAC clone RP23-430N15 from chromosome 17, complete
             sequence
          Length = 190724

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ctaagttaagctaggaagaa 67
             ||||||||||||||||||||
Sbjct: 89865 ctaagttaagctaggaagaa 89846

>ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g09310)
           partial mRNA
          Length = 846

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 catcttcgtcgcgctcaccc 295
           ||||||||||||||||||||
Sbjct: 492 catcttcgtcgcgctcaccc 511

>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   tcgtcgacgccggcgaccag 243
             ||||||||||||||||||||
Sbjct: 99075 tcgtcgacgccggcgaccag 99094

>dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
          Length = 217594

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   tcggcatcacgccgggcgac 276
             ||||||||||||||||||||
Sbjct: 79393 tcggcatcacgccgggcgac 79374

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 149     tccggccggagaaggtgcgg 168
               ||||||||||||||||||||
Sbjct: 4456597 tccggccggagaaggtgcgg 4456616



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     tccggccggagaaggtgcgg 168
               ||||||||||||||||||||
Sbjct: 4456606 tccggccggagaaggtgcgg 4456587

>dbj|AK042355.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630084N20 product:unclassifiable, full
            insert sequence
          Length = 2559

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   ctaagttaagctaggaagaa 67
            ||||||||||||||||||||
Sbjct: 2451 ctaagttaagctaggaagaa 2432

>gb|AF293977.1|AF293977 Aeromonas hydrophila htrA-like serine protease (prtS1) gene,
           complete cds
          Length = 1362

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 258 cggcatcacgccgggcgacatcttcgtc 285
           |||||||| ||||||||||||| |||||
Sbjct: 918 cggcatcaagccgggcgacatcatcgtc 945

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 263    tcacgccgggcgacatcttcgtcg 286
              ||||||||| ||||||||||||||
Sbjct: 484876 tcacgccggacgacatcttcgtcg 484899

>ref|XM_306692.2| Anopheles gambiae str. PEST ENSANGP00000000827
           (ENSANGG00000000726), partial mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  agccggatcagctgctgctg 115
           ||||||||||||||||||||
Sbjct: 275 agccggatcagctgctgctg 294

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 244     acggcccgtgacgtcggcatcacgccgg 271
               |||||||| |||| ||||||||||||||
Sbjct: 2507082 acggcccgcgacgccggcatcacgccgg 2507109

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    tgctcctcaacttcttcgcc 381
              ||||||||||||||||||||
Sbjct: 818712 tgctcctcaacttcttcgcc 818731

>dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VAR region, complete cds
          Length = 73934

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   tcggcatcacgccgggcgac 276
             ||||||||||||||||||||
Sbjct: 39825 tcggcatcacgccgggcgac 39806


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,889,676
Number of Sequences: 3902068
Number of extensions: 2889676
Number of successful extensions: 60336
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59447
Number of HSP's gapped (non-prelim): 885
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)