>HLXB9_HUMAN (P50219) Homeobox protein HB9|
          Length = 403

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 35/111 (31%), Positives = 44/111 (39%)
 Frame = +3

Query: 3   PHHNIHNISRAMMMHRATATIIALVCCLLAGGGARAQPFDYPAGRLATTWANTDAALPHH 182
           PHH+ H  +RA     A A   A      AGG A      +P G          AAL  H
Sbjct: 113 PHHHAHPGARAAAAAAAAAAAAA------AGGLALGL---HPGGAQGGAGLPAQAALYGH 163

Query: 183 LVYTDGSVARAALLRLNPAGLGPSYAFGFFCTASQPRGDGPAAPCTEFLLG 335
            VY   + A AA L    AG  P+ ++ +     Q +G  PA P     LG
Sbjct: 164 PVYGYSAAAAAAAL----AGQHPALSYSY----PQVQGAHPAHPADPIKLG 206

>HLXB9_MOUSE (Q9QZW9) Homeobox protein HB9|
          Length = 404

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 33/113 (29%), Positives = 43/113 (38%)
 Frame = +3

Query: 3   PHHNIHNISRAMMMHRATATIIALVCCLLAGGGARAQPFDYPAGRLATTWANTDAALPHH 182
           PHH+ H          A A   A      AGG A      +P G          AAL  H
Sbjct: 113 PHHHAHP--------GAAAAAAAAAAAAAAGGLALGL---HPGGAQGGAGLPAQAALYGH 161

Query: 183 LVYTDGSVARAALLRLNPAGLGPSYAFGFFCTASQPRGDGPAAPCTEFLLGVA 341
            VY+  + A AA L    AG  P+ ++ +     Q +G  PA P     LG +
Sbjct: 162 PVYSYSAAAAAAAL----AGQHPALSYSY----PQVQGAHPAHPADPIKLGAS 206

>FRQ_NEUCR (P19970) Frequency clock protein|
          Length = 989

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +3

Query: 162 DAALPHHLVYTDGSVARAALLRLNPAGLGPSYAFGFFCTASQPRGDGPAAP 314
           D  LPHH+V TD    +  + RL     G           S P  D P AP
Sbjct: 301 DGLLPHHIVMTDKEKKKLVVRRLEQLFTGKISGRNMQRNQSMPSMDAPLAP 351

>COBQ_MYCPA (Q73VS8) Cobyric acid synthase|
          Length = 497

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +3

Query: 57  ATIIALVCCLLAGGGARAQPFDYPAGRLATTWANTDAALPHHLVYTDGSVARAALLRLNP 236
           + ++A +C LLA  G R  PF       A   +N  A     +    G + RA  ++   
Sbjct: 17  SVVVAGLCRLLARRGVRVAPFK------AQNMSNNSA-----VTVEGGEIGRAQAIQARA 65

Query: 237 AGLGPSYAF 263
           AGL PS  F
Sbjct: 66  AGLEPSVRF 74

>SSR4_HUMAN (P31391) Somatostatin receptor type 4 (SS4R)|
          Length = 388

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 48  RATATIIALVCCLLAG-GGARAQPFDYPAGRL 140
           R+   ++ L CCLL G GGA  +P DY A  L
Sbjct: 320 RSFQRVLCLRCCLLEGAGGAEEEPLDYYATAL 351

>AOC3_BOVIN (Q9TTK6) Membrane copper amine oxidase (EC 1.4.3.6)|
           (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular
           adhesion protein 1) (VAP-1)
          Length = 762

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 36  MMMHRATATIIALVCCLLAG----GGARAQPFDYPAG 134
           +++  A  TI ALVC L+AG    GG  +QP   P+G
Sbjct: 7   VLLALAVITIFALVCVLIAGRGGDGGEASQPHYCPSG 43

>AOC3_MOUSE (O70423) Membrane copper amine oxidase (EC 1.4.3.6)|
           (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular
           adhesion protein 1) (VAP-1)
          Length = 764

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 36  MMMHRATATIIALVCCLLAG----GGARAQPFDYPA 131
           +++  A  TI ALVC LLAG    GG  +QP   P+
Sbjct: 7   VLLALAVITIFALVCVLLAGRSGDGGGLSQPLHCPS 42

>AOC3_RAT (O08590) Membrane copper amine oxidase (EC 1.4.3.6)|
           (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular
           adhesion protein 1) (VAP-1) (VP97)
          Length = 762

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 36  MMMHRATATIIALVCCLLAG----GGARAQPFDYPA 131
           +++  A  TI ALVC LLAG    GG  +QP   P+
Sbjct: 7   VLLALAVITIFALVCVLLAGRSGDGGRLSQPLHCPS 42

>LGRA_BREPA (Q70LM7) Linear gramicidin synthetase subunit A [Includes:|
           ATP-dependent valine/leucine adenylase (Val/LeuA)
           (Valine/leucine activase); ATP-dependent glycine
           adenylase (GlyA) (Glycine activase)]
          Length = 2273

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 33  AMMMHRATATIIALVCCLLAGGGARAQPFDYPAGRLATTWANTDAAL 173
           A+M+ ++   I++++  + AGG       DYP  R+A   A++ AA+
Sbjct: 256 AIMLDKSLDMIVSILAVMKAGGAYVPIDPDYPGERIAYMLADSSAAI 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,619,012
Number of Sequences: 219361
Number of extensions: 711046
Number of successful extensions: 2032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)