ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet117d12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189334.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 188 bits (95), Expect = 1e-44 Identities = 152/171 (88%) Strand = Plus / Plus Query: 108 gcgcagccgttcgactacccggcggggaggctcgccacgacctgggccaacacggacgcc 167 |||||||||| |||||||||| ||| || || ||||||| ||||| ||||| |||||| Sbjct: 58 gcgcagccgtacgactacccgacggcgaagccgtccacgacgtgggcgaacaccgacgcc 117 Query: 168 gccctgccgcaccacctcgtctacaccgacggctccgtggcgcgcgccgccctgctgcgg 227 || |||| |||||| ||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 118 gcgctgcgccaccacgtcgcctacaccgacggctccgtggcgcgcgccgcgctgctgcgc 177 Query: 228 ctcaacccggcgggcctcggcccctcctacgccttcggcttcttctgcacc 278 |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 178 ctcaacccggcgcgcctcggcccctccttcgccttcggcttcttctgcacc 228 Score = 97.6 bits (49), Expect = 3e-17 Identities = 135/161 (83%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 312 ccgtgcaccgagttcctcctcggcgtcgccgtcgtctactgcaacagcggcgccggcatg 371 |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 247 ccgtgcgccgacttcctcctcggcgtcgccgtcgtgtactgcaacagcggcgccgggatc 306 Query: 372 acgttcgtcacggccggcgtcccgcaggtcgtctggtccgcc-accgcggcagccccgtc 430 || ||||| ||||| |||||||||| || ||||| ||| |||||| | ||||||| Sbjct: 307 accgcggtcaccaccggcatcccgcaggtggtgtggtcggccaaccgcgccgcccccgtc 366 Query: 431 -cggacggcgccgcggcagagctcacggtggatggcgacct 470 |||||||||| | || |||||||||| ||| |||||||| Sbjct: 367 ggggacggcgccaccgcggagctcacggcggacggcgacct 407
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 188 bits (95), Expect = 1e-44 Identities = 152/171 (88%) Strand = Plus / Plus Query: 108 gcgcagccgttcgactacccggcggggaggctcgccacgacctgggccaacacggacgcc 167 |||||||||| |||||||||| ||| || || ||||||| ||||| ||||| |||||| Sbjct: 42231281 gcgcagccgtacgactacccgacggcgaagccgtccacgacgtgggcgaacaccgacgcc 42231340 Query: 168 gccctgccgcaccacctcgtctacaccgacggctccgtggcgcgcgccgccctgctgcgg 227 || |||| |||||| ||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 42231341 gcgctgcgccaccacgtcgcctacaccgacggctccgtggcgcgcgccgcgctgctgcgc 42231400 Query: 228 ctcaacccggcgggcctcggcccctcctacgccttcggcttcttctgcacc 278 |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 42231401 ctcaacccggcgcgcctcggcccctccttcgccttcggcttcttctgcacc 42231451 Score = 97.6 bits (49), Expect = 3e-17 Identities = 135/161 (83%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 312 ccgtgcaccgagttcctcctcggcgtcgccgtcgtctactgcaacagcggcgccggcatg 371 |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 42231470 ccgtgcgccgacttcctcctcggcgtcgccgtcgtgtactgcaacagcggcgccgggatc 42231529 Query: 372 acgttcgtcacggccggcgtcccgcaggtcgtctggtccgcc-accgcggcagccccgtc 430 || ||||| ||||| |||||||||| || ||||| ||| |||||| | ||||||| Sbjct: 42231530 accgcggtcaccaccggcatcccgcaggtggtgtggtcggccaaccgcgccgcccccgtc 42231589 Query: 431 -cggacggcgccgcggcagagctcacggtggatggcgacct 470 |||||||||| | || |||||||||| ||| |||||||| Sbjct: 42231590 ggggacggcgccaccgcggagctcacggcggacggcgacct 42231630 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 42898189 tcctcctcggcgtcgccgtc 42898170
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 188 bits (95), Expect = 1e-44 Identities = 152/171 (88%) Strand = Plus / Plus Query: 108 gcgcagccgttcgactacccggcggggaggctcgccacgacctgggccaacacggacgcc 167 |||||||||| |||||||||| ||| || || ||||||| ||||| ||||| |||||| Sbjct: 3238 gcgcagccgtacgactacccgacggcgaagccgtccacgacgtgggcgaacaccgacgcc 3297 Query: 168 gccctgccgcaccacctcgtctacaccgacggctccgtggcgcgcgccgccctgctgcgg 227 || |||| |||||| ||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 3298 gcgctgcgccaccacgtcgcctacaccgacggctccgtggcgcgcgccgcgctgctgcgc 3357 Query: 228 ctcaacccggcgggcctcggcccctcctacgccttcggcttcttctgcacc 278 |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 3358 ctcaacccggcgcgcctcggcccctccttcgccttcggcttcttctgcacc 3408 Score = 97.6 bits (49), Expect = 3e-17 Identities = 135/161 (83%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 312 ccgtgcaccgagttcctcctcggcgtcgccgtcgtctactgcaacagcggcgccggcatg 371 |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 3427 ccgtgcgccgacttcctcctcggcgtcgccgtcgtgtactgcaacagcggcgccgggatc 3486 Query: 372 acgttcgtcacggccggcgtcccgcaggtcgtctggtccgcc-accgcggcagccccgtc 430 || ||||| ||||| |||||||||| || ||||| ||| |||||| | ||||||| Sbjct: 3487 accgcggtcaccaccggcatcccgcaggtggtgtggtcggccaaccgcgccgcccccgtc 3546 Query: 431 -cggacggcgccgcggcagagctcacggtggatggcgacct 470 |||||||||| | || |||||||||| ||| |||||||| Sbjct: 3547 ggggacggcgccaccgcggagctcacggcggacggcgacct 3587
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 188 bits (95), Expect = 1e-44 Identities = 152/171 (88%) Strand = Plus / Plus Query: 108 gcgcagccgttcgactacccggcggggaggctcgccacgacctgggccaacacggacgcc 167 |||||||||| |||||||||| ||| || || ||||||| ||||| ||||| |||||| Sbjct: 104479 gcgcagccgtacgactacccgacggcgaagccgtccacgacgtgggcgaacaccgacgcc 104538 Query: 168 gccctgccgcaccacctcgtctacaccgacggctccgtggcgcgcgccgccctgctgcgg 227 || |||| |||||| ||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 104539 gcgctgcgccaccacgtcgcctacaccgacggctccgtggcgcgcgccgcgctgctgcgc 104598 Query: 228 ctcaacccggcgggcctcggcccctcctacgccttcggcttcttctgcacc 278 |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 104599 ctcaacccggcgcgcctcggcccctccttcgccttcggcttcttctgcacc 104649 Score = 97.6 bits (49), Expect = 3e-17 Identities = 135/161 (83%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 312 ccgtgcaccgagttcctcctcggcgtcgccgtcgtctactgcaacagcggcgccggcatg 371 |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 104668 ccgtgcgccgacttcctcctcggcgtcgccgtcgtgtactgcaacagcggcgccgggatc 104727 Query: 372 acgttcgtcacggccggcgtcccgcaggtcgtctggtccgcc-accgcggcagccccgtc 430 || ||||| ||||| |||||||||| || ||||| ||| |||||| | ||||||| Sbjct: 104728 accgcggtcaccaccggcatcccgcaggtggtgtggtcggccaaccgcgccgcccccgtc 104787 Query: 431 -cggacggcgccgcggcagagctcacggtggatggcgacct 470 |||||||||| | || |||||||||| ||| |||||||| Sbjct: 104788 ggggacggcgccaccgcggagctcacggcggacggcgacct 104828
>dbj|AK107370.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B03, full insert sequence Length = 1610 Score = 188 bits (95), Expect = 1e-44 Identities = 152/171 (88%) Strand = Plus / Plus Query: 108 gcgcagccgttcgactacccggcggggaggctcgccacgacctgggccaacacggacgcc 167 |||||||||| |||||||||| ||| || || ||||||| ||||| ||||| |||||| Sbjct: 113 gcgcagccgtacgactacccgacggcgaagccgtccacgacgtgggcgaacaccgacgcc 172 Query: 168 gccctgccgcaccacctcgtctacaccgacggctccgtggcgcgcgccgccctgctgcgg 227 || |||| |||||| ||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 173 gcgctgcgccaccacgtcgcctacaccgacggctccgtggcgcgcgccgcgctgctgcgc 232 Query: 228 ctcaacccggcgggcctcggcccctcctacgccttcggcttcttctgcacc 278 |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 233 ctcaacccggcgcgcctcggcccctccttcgccttcggcttcttctgcacc 283 Score = 97.6 bits (49), Expect = 3e-17 Identities = 135/161 (83%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 312 ccgtgcaccgagttcctcctcggcgtcgccgtcgtctactgcaacagcggcgccggcatg 371 |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 302 ccgtgcgccgacttcctcctcggcgtcgccgtcgtgtactgcaacagcggcgccgggatc 361 Query: 372 acgttcgtcacggccggcgtcccgcaggtcgtctggtccgcc-accgcggcagccccgtc 430 || ||||| ||||| |||||||||| || ||||| ||| |||||| | ||||||| Sbjct: 362 accgcggtcaccaccggcatcccgcaggtggtgtggtcggccaaccgcgccgcccccgtc 421 Query: 431 -cggacggcgccgcggcagagctcacggtggatggcgacct 470 |||||||||| | || |||||||||| ||| |||||||| Sbjct: 422 ggggacggcgccaccgcggagctcacggcggacggcgacct 462
>ref|XM_479649.1| Oryza sativa (japonica cultivar-group), mRNA Length = 968 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 716 tcctcctcggcgtcgccgtcgtc 738
>ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA Length = 1107 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 726 tcctcctcggcgtcgccgtcgtc 748
>ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA Length = 1158 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 722 tcctcctcggcgtcgccgtcgtc 744
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 89865 tcctcctcggcgtcgccgtcgtc 89843 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 26639869 tcctcctcggcgtcgccgtc 26639888
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 89 ggccggcggcggggcgcgcgcgc 111 ||||||||||||||||||||||| Sbjct: 27906159 ggccggcggcggggcgcgcgcgc 27906181 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 22035559 tcctcctcggcgtcgccgtcg 22035579 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 22029854 tcctcctcggcgtcgccgtcg 22029874 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtct 348 ||||||||| |||||||||||||| Sbjct: 3357925 tcctcctcgtcgtcgccgtcgtct 3357948
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 5200 tcctcctcggcgtcgccgtcgtc 5178
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 89 ggccggcggcggggcgcgcgcgc 111 ||||||||||||||||||||||| Sbjct: 33611 ggccggcggcggggcgcgcgcgc 33633
>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1147B12 Length = 127902 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 89865 tcctcctcggcgtcgccgtcgtc 89843
>dbj|AK107937.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A09, full insert sequence Length = 1039 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 89 ggccggcggcggggcgcgcgcgc 111 ||||||||||||||||||||||| Sbjct: 585 ggccggcggcggggcgcgcgcgc 563
>dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D02, full insert sequence Length = 1107 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 726 tcctcctcggcgtcgccgtcgtc 748
>dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047K10, full insert sequence Length = 968 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 716 tcctcctcggcgtcgccgtcgtc 738
>dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B08, full insert sequence Length = 1160 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtc 347 ||||||||||||||||||||||| Sbjct: 722 tcctcctcggcgtcgccgtcgtc 744
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24, complete sequence Length = 162385 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Plus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 54656 gtcgtctggtccgccaaccgcggccgccccgtcc 54689 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 40378 gtcgtctggtccgccaaccgcggccgccccgtcc 40345
>ref|XM_001000241.1| PREDICTED: Mus musculus hypothetical protein LOC677065 (LOC677065), mRNA Length = 540 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 84 ctcctggccggcggcggggcgc 105 |||||||||||||||||||||| Sbjct: 285 ctcctggccggcggcggggcgc 306
>ref|XM_843943.1| PREDICTED: Canis familiaris similar to Protocadherin alpha 13 precursor (PCDH-alpha13) (LOC487166), mRNA Length = 2799 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1884 gccggcggcggggggcgcgcgcagcc 1909
>ref|XM_843922.1| PREDICTED: Canis familiaris similar to protocadherin alpha 12 isoform 2 precursor (LOC607297), mRNA Length = 2439 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1857 gccggcggcggggggcgcgcgcagcc 1882
>ref|XM_843901.1| PREDICTED: Canis familiaris similar to protocadherin alpha 11 isoform 2 precursor (LOC607280), mRNA Length = 2466 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1860 gccggcggcggggggcgcgcgcagcc 1885
>ref|XM_843882.1| PREDICTED: Canis familiaris similar to protocadherin alpha 10 (LOC607266), mRNA Length = 2496 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1857 gccggcggcggggggcgcgcgcagcc 1882
>ref|XM_843862.1| PREDICTED: Canis familiaris similar to protocadherin alpha 10 isoform 2 precursor (LOC607253), mRNA Length = 2544 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1857 gccggcggcggggggcgcgcgcagcc 1882
>ref|XM_843852.1| PREDICTED: Canis familiaris similar to protocadherin alpha 9 isoform 2 precursor (LOC487165), mRNA Length = 2490 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1857 gccggcggcggggggcgcgcgcagcc 1882
>ref|XM_843838.1| PREDICTED: Canis familiaris similar to protocadherin alpha 6 isoform 2 precursor (LOC607224), mRNA Length = 2457 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1857 gccggcggcggggggcgcgcgcagcc 1882
>ref|XM_843807.1| PREDICTED: Canis familiaris similar to Protocadherin alpha 4 precursor (PCDH-alpha4) (LOC607199), mRNA Length = 2424 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1857 gccggcggcggggggcgcgcgcagcc 1882
>ref|XM_843795.1| PREDICTED: Canis familiaris similar to protocadherin alpha 3 isoform 2 precursor (LOC607185), mRNA Length = 2538 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1956 gccggcggcggggggcgcgcgcagcc 1981
>ref|XM_843778.1| PREDICTED: Canis familiaris similar to protocadherin alpha 1 isoform 2 precursor (LOC487164), mRNA Length = 2436 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcagcc 115 ||||||||||||| |||||||||||| Sbjct: 1857 gccggcggcggggggcgcgcgcagcc 1882
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Plus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 1540120 gtcgtctggtccgccaaccgcggccgccccgtcc 1540153 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 1525842 gtcgtctggtccgccaaccgcggccgccccgtcc 1525809
>dbj|AK121819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099B16, full insert sequence Length = 2712 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Plus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 297 gtcgtctggtccgccaaccgcggccgccccgtcc 330
>dbj|AK102340.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091B04, full insert sequence Length = 1869 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Plus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 286 gtcgtctggtccgccaaccgcggccgccccgtcc 319
>dbj|AK122257.1| Mus musculus mRNA for mKIAA0358 protein Length = 5962 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 84 ctcctggccggcggcggggcgc 105 |||||||||||||||||||||| Sbjct: 62 ctcctggccggcggcggggcgc 41
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Plus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 1537841 gtcgtctggtccgccaaccgcggccgccccgtcc 1537874 Score = 44.1 bits (22), Expect = 0.41 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 399 gtcgtctggtccgcc-accgcggcagccccgtcc 431 ||||||||||||||| |||||||| ||||||||| Sbjct: 1523563 gtcgtctggtccgccaaccgcggccgccccgtcc 1523530
>ref|XM_466377.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1842 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 501 tcctcctcggcgtcgccgtcg 521
>ref|XM_466376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1548 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 437 tcctcctcggcgtcgccgtcg 457
>gb|AY273169.1| Rhodobacter capsulatus assimilatory nitrate reduction system, partial sequence Length = 17155 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 cgccgccctgctgcggctcaacccg 236 ||||||| ||||||||||||||||| Sbjct: 6403 cgccgccgtgctgcggctcaacccg 6427
>ref|XM_363028.1| Magnaporthe grisea 70-15 predicted protein (MG08612.4) partial cds Length = 1851 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cgtggcgcgcgccgccctgct 223 ||||||||||||||||||||| Sbjct: 1317 cgtggcgcgcgccgccctgct 1337
>gb|L76841.1|MOCDPOL Molluscum contagiosum virus DNA polymerase (DPOL) gene, complete cds Length = 7267 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ggcgcgcgcgcagccgttcga 121 ||||||||||||||||||||| Sbjct: 3986 ggcgcgcgcgcagccgttcga 3966
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 324 ttcctcctcggcgtcgccgtcgtct 348 ||||||||| ||||||||||||||| Sbjct: 1642966 ttcctcctccgcgtcgccgtcgtct 1642942
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 gccgccctgccgcaccacctc 185 ||||||||||||||||||||| Sbjct: 100330 gccgccctgccgcaccacctc 100310
>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23 Length = 100041 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 84181 tcctcctcggcgtcgccgtcg 84201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 78476 tcctcctcggcgtcgccgtcg 78496
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 9458 tcctcctcggcgtcgccgtcg 9478 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 3753 tcctcctcggcgtcgccgtcg 3773
>dbj|AK068280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136H14, full insert sequence Length = 1842 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcg 345 ||||||||||||||||||||| Sbjct: 501 tcctcctcggcgtcgccgtcg 521
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 cgcgcgccgccctgctgcggc 228 ||||||||||||||||||||| Sbjct: 553339 cgcgcgccgccctgctgcggc 553319
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tcctcggcgtcgccgtcgtc 347 |||||||||||||||||||| Sbjct: 61271 tcctcggcgtcgccgtcgtc 61290
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 ccgccaccgcggcagccccgtccg 432 ||||||||||||||||| |||||| Sbjct: 135985 ccgccaccgcggcagccgcgtccg 135962
>ref|XM_483510.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1197 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 1151 tcctcctcggcgtcgccgtc 1170
>ref|XM_475266.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 246 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcctcggcgtcgccgtcgtc 347 |||||||||||||||||||| Sbjct: 197 tcctcggcgtcgccgtcgtc 178
>ref|XM_464198.1| Oryza sativa (japonica cultivar-group), mRNA Length = 645 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtct 348 ||||||||| |||||||||||||| Sbjct: 415 tcctcctcgtcgtcgccgtcgtct 438
>ref|NM_189467.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1059 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 1013 tcctcctcggcgtcgccgtc 1032
>ref|XM_472622.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1836 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ctcctacgccttcggcttct 270 |||||||||||||||||||| Sbjct: 1545 ctcctacgccttcggcttct 1564
>gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome 13, complete sequence Length = 212570 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cggcggcggggcgcgcgcgc 111 |||||||||||||||||||| Sbjct: 30183 cggcggcggggcgcgcgcgc 30202
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 ccggcggcggggcgcgcgcgcagc 114 ||||||||| |||||||||||||| Sbjct: 2226894 ccggcggcgcggcgcgcgcgcagc 2226917
>ref|XM_980284.1| PREDICTED: Mus musculus cDNA sequence BC010304 (BC010304), mRNA Length = 5275 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cggcggcggggcgcgcgcgc 111 |||||||||||||||||||| Sbjct: 352 cggcggcggggcgcgcgcgc 333
>ref|XM_843821.1| PREDICTED: Canis familiaris similar to protocadherin alpha 5 isoform 2 precursor (LOC607212), mRNA Length = 2397 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gccggcggcggggcgcgcgcgcag 113 ||||||||||||| |||||||||| Sbjct: 1854 gccggcggcggggggcgcgcgcag 1877
>gb|AY302058.1| Oryza sativa (japonica cultivar-group) zinc transporter (ZIP1) mRNA, complete cds Length = 1343 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 1066 tcctcctcggcgtcgccgtc 1085
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 acacggacgccgccctgccgcacc 180 |||||||||||| ||||||||||| Sbjct: 4177389 acacggacgccggcctgccgcacc 4177412
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ggccggcggcggggcgcgcg 108 |||||||||||||||||||| Sbjct: 47734 ggccggcggcggggcgcgcg 47753
>emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0076O17, complete sequence Length = 121130 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctcctacgccttcggcttct 270 |||||||||||||||||||| Sbjct: 45472 ctcctacgccttcggcttct 45453
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 ccggcggcggggcgcgcgcgcagc 114 ||||||||| |||||||||||||| Sbjct: 2147795 ccggcggcgcggcgcgcgcgcagc 2147772
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cctcctggccggcggcgggg 102 |||||||||||||||||||| Sbjct: 235502 cctcctggccggcggcgggg 235483
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 ggacgccgccctgccgcaccacct 184 |||||||||||||||||| ||||| Sbjct: 1229408 ggacgccgccctgccgcagcacct 1229385
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcgcgcgccgccctgctgcggctc 230 |||||||||||||| ||||||||| Sbjct: 265314 gcgcgcgccgccctcctgcggctc 265337
>gb|AC011199.22| Homo sapiens chromosome 3 clone RP11-61K12, complete sequence Length = 152135 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tggccggcggcggggcgcgc 107 |||||||||||||||||||| Sbjct: 75962 tggccggcggcggggcgcgc 75943
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctcctacgccttcggcttct 270 |||||||||||||||||||| Sbjct: 21979550 ctcctacgccttcggcttct 21979531
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggccggcggcggggcgcgcg 108 |||||||||||||||||||| Sbjct: 23919675 ggccggcggcggggcgcgcg 23919656
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tcctcggcgtcgccgtcgtc 347 |||||||||||||||||||| Sbjct: 20934493 tcctcggcgtcgccgtcgtc 20934512
>emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064D20, complete sequence Length = 99855 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctcctacgccttcggcttct 270 |||||||||||||||||||| Sbjct: 52121 ctcctacgccttcggcttct 52102
>gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, complete sequence Length = 207950 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tcctcctcggcgtcgccgtcgtct 348 ||||||||||| |||||||||||| Sbjct: 38802 tcctcctcggcttcgccgtcgtct 38779
>gb|AC093249.4| Homo sapiens chromosome 16 clone RP11-146F11, complete sequence Length = 185664 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtct 348 ||||||||||| |||||||||||| Sbjct: 47224 tcctcctcggcttcgccgtcgtct 47247
>gb|AC130566.7| Homo sapiens 3 BAC RP11-61K12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 91240 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tggccggcggcggggcgcgc 107 |||||||||||||||||||| Sbjct: 14939 tggccggcggcggggcgcgc 14958
>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518C01 Length = 173555 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 91923 tcctcctcggcgtcgccgtc 91904
>gb|AF072887.1|AF072887 Burkholderia pseudomallei regulator AmrR (amrR), putative membrane fusion protein AmrA (amrA), and putative transporter AmrB (amrB) genes, complete cds Length = 5137 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 ccggcggcggggcgcgcgcgcagc 114 ||||||||| |||||||||||||| Sbjct: 5107 ccggcggcgcggcgcgcgcgcagc 5130
>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07 Length = 142850 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggccggcggcggggcgcgcg 108 |||||||||||||||||||| Sbjct: 74602 ggccggcggcggggcgcgcg 74583
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 51396 tcctcctcggcgtcgccgtc 51415
>dbj|AK172909.1| Mus musculus mRNA for mKIAA0183 protein Length = 5105 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cggcggcggggcgcgcgcgc 111 |||||||||||||||||||| Sbjct: 184 cggcggcggggcgcgcgcgc 165
>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_G05 Length = 141860 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtcgtct 348 ||||||||| |||||||||||||| Sbjct: 106785 tcctcctcgtcgtcgccgtcgtct 106808
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702E04 Length = 190948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcctcctcggcgtcgccgtc 344 |||||||||||||||||||| Sbjct: 188736 tcctcctcggcgtcgccgtc 188755
>emb|AJ327297.1|HSA327297 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GD5R Length = 686 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tcctggccggcggcggggcgcgcg 108 ||||||| |||||||||||||||| Sbjct: 16 tcctggctggcggcggggcgcgcg 39
>dbj|AK072763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139P09, full insert sequence Length = 1450 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctcctacgccttcggcttct 270 |||||||||||||||||||| Sbjct: 396 ctcctacgccttcggcttct 377
>ref|NM_210018.1| Eremothecium gossypii AEL196Wp (AEL196W), mRNA Length = 1002 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcgcgcgccgccctgctgcggctc 230 |||||||||||||| ||||||||| Sbjct: 571 gcgcgcgccgccctcctgcggctc 594
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gccggcgtcccgcaggtcgt 403 |||||||||||||||||||| Sbjct: 2621659 gccggcgtcccgcaggtcgt 2621678
>dbj|AK066891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B12, full insert sequence Length = 1102 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcctcggcgtcgccgtcgtc 347 |||||||||||||||||||| Sbjct: 804 tcctcggcgtcgccgtcgtc 785
>dbj|AK064785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B16, full insert sequence Length = 2110 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ctcctacgccttcggcttct 270 |||||||||||||||||||| Sbjct: 1654 ctcctacgccttcggcttct 1673
>emb|BX649588.5| Zebrafish DNA sequence from clone CH211-97M8 in linkage group 20, complete sequence Length = 75268 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acatcacaatatccacaata 24 |||||||||||||||||||| Sbjct: 43641 acatcacaatatccacaata 43622
>dbj|AK058688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A12, full insert sequence Length = 881 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcctcggcgtcgccgtcgtc 347 |||||||||||||||||||| Sbjct: 577 tcctcggcgtcgccgtcgtc 558
>emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chromosome 13, complete sequence Length = 231247 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cggcggcggggcgcgcgcgc 111 |||||||||||||||||||| Sbjct: 84733 cggcggcggggcgcgcgcgc 84752 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,235,275 Number of Sequences: 3902068 Number of extensions: 3235275 Number of successful extensions: 72180 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 69758 Number of HSP's gapped (non-prelim): 2431 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
