ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet117d05 |
|---|---|
| Clone Library Name | barley_pub |
>SYD_BURTA (Q2T132) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -2 Query: 432 KHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 +H +G+ + Q RR HG +I I+ DRE L Q+ C P Sbjct: 13 EHLLGQTVSLCGWVQRRRDHGGVIFIDLRDREGLVQVVCDP 53
>SYD_BURS3 (Q39D20) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -2 Query: 432 KHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 +H +G+ + Q RR HG +I I+ DRE L Q+ C P Sbjct: 13 EHLLGQTVSLCGWVQRRRDHGGVIFIDLRDREGLVQVVCDP 53
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 30.4 bits (67), Expect = 1.9 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = +1 Query: 88 AAITREPSRPEPSRKISEPFVSY-SPQPQHFPNEGLYKAYLVIQRFKSRISSDPKNITRT 264 AA +PS P P++K+ +P V +P P P L L R +S S P + + Sbjct: 1242 AAFPPQPSLPTPAQKLQDPLVPIAAPMPPSIPQSNLETPPLPPPRSRSS-QSLPSDSSPQ 1300 Query: 265 WSGHDICGRKSYLGFRCGTTPDLAKKLTIMAVDFNDFAMS 384 G++ + CG + ++ T+ + F D ++S Sbjct: 1301 LQQEQPTGQQVKINGACG----VKQEPTLKSDPFEDLSLS 1336
>SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 602 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -2 Query: 396 QHRRTHGKIIEINRHDRELLSQIRCRP 316 Q RR HG +I I+ DRE L Q+ C P Sbjct: 28 QRRRDHGGVIFIDLRDREGLVQVVCDP 54
>MAT1_COCKU (Q9Y8D3) Mating-type protein MAT-1| Length = 379 Score = 29.6 bits (65), Expect = 3.3 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Frame = +1 Query: 109 SRPEPSRKISEPFVSYSPQPQHFPN---EGLYKAYLVIQRFKSRISSDPKNITRTWSGHD 279 S P +R + +P+ +++P P H PN +GL +L Q ++++ + T + S Sbjct: 276 SPPPMNRYMPDPYSTFAPTPNHSPNPFYDGL-TGFLSEQASIEQVNAATLHNTHSLSDSG 334 Query: 280 ICGRKSYLGFRCGTTPDLAKKLTIMAVDFNDFAMSA 387 + G SY+ T + A + + +D++ F + A Sbjct: 335 LSGDMSYM-----TMDNFATNMPNL-IDYDAFRLGA 364
>CH60_THET8 (Q5SLM2) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 60) Length = 542 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -2 Query: 375 KIIEINRHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 220 K + I DR+ + ++ A +P+VG AD M + G + V + +LE Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181
>CH60_THET2 (P61490) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 60) Length = 542 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -2 Query: 375 KIIEINRHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 220 K + I DR+ + ++ A +P+VG AD M + G + V + +LE Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181
>SYD_DECAR (Q47IE0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 599 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -2 Query: 390 RRTHGKIIEINRHDRELLSQIRCRP 316 RR HG +I I+ DRE L+Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLAQVVCDP 51
>SYD_GEOSL (Q74D56) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 594 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -2 Query: 390 RRTHGKIIEINRHDRELLSQIRCRPATEPK 301 RR HG +I I+ DRE L+QI PA P+ Sbjct: 35 RRDHGGLIFIDLRDREGLAQIVFDPAKAPE 64
>SYD_BURPS (Q63X93) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -2 Query: 432 KHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 11 EHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURP1 (Q3JVY8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -2 Query: 432 KHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 11 EHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURMA (Q62MP0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -2 Query: 432 KHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 11 EHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>DBX1_MOUSE (P52950) Homeobox protein DBX1| Length = 335 Score = 28.5 bits (62), Expect = 7.4 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -2 Query: 399 FQHRRTHGKIIEINRHDRELLSQIRCRPATEPKVGFPAADV--MARPGPGD 253 FQ+RR + N +RELLS CR T P P D+ + + GPGD Sbjct: 229 FQNRRMKWR----NSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGD 275
>SYD_COXBU (Q83BE5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 390 RRTHGKIIEINRHDRELLSQIRCRP 316 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGLIFIDLRDREGLVQVVCNP 51
>STP2_YEAST (P38704) Zinc finger protein STP2| Length = 541 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 61 SVCLTLSLVAAITREPSRPEPSRKISEPFVSYSPQPQHFPNEGLYKA 201 +V L+L I R PSR EP+ K+ +S P + + N YKA Sbjct: 113 AVTTQLNLDEPILRGPSRGEPA-KLQNDLISSPPLEESYINNDQYKA 158
>SYD_PELCD (Q3A5R7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 596 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -2 Query: 396 QHRRTHGKIIEINRHDRELLSQIRCRPATEPK 301 Q RR HG +I I+ DR+ ++Q+ P +P+ Sbjct: 33 QRRRDHGGLIFIDLRDRQGIAQLALDPDRDPE 64
>SYD_AZOSE (Q5P280) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 599 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 390 RRTHGKIIEINRHDRELLSQIRCRP 316 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLVQVVCDP 51
>ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger protein of the| cerebellum 3) Length = 467 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +2 Query: 149 YHTAHSHNTSQTRGYTKPISLSSASRAEFLVTRKTSPGPGLAMTSAAG 292 +H H H+TSQ Y S + S EFL +++S GL+ ++ G Sbjct: 90 HHHHHHHHTSQVPSYGGAASAAFNSTREFLFRQRSS---GLSEAASGG 134
>SYD_RALSO (Q8Y270) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 605 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 390 RRTHGKIIEINRHDRELLSQIRCRP 316 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLVQVVCDP 51
>SPA9_HUMAN (Q86WD7) Serpin A9 precursor (Germinal center B-cell expressed| transcript 1 protein) Length = 417 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +1 Query: 28 MAKYLYGS-FAISVCLTLSLVAAITREPSRPEPSRKISEP 144 MA YLYG FA+ +C + V+ + P PS S P Sbjct: 1 MASYLYGVLFAVGLCAPIYCVSPANAPSAYPRPSSTKSTP 40
>SYD_CHLPN (Q9Z7P2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 584 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -2 Query: 423 IGELIDEA-FQHR-RTHGKIIEINRHDRELLSQIRCRPATEPKV 298 IGE + A + HR R HG ++ I+ DR ++QI CR +P++ Sbjct: 16 IGENVQLAGWVHRYRNHGGVVFIDLRDRFGITQIVCREDEQPEL 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,236,285 Number of Sequences: 219361 Number of extensions: 1296244 Number of successful extensions: 4173 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4031 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4171 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
