ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet117b06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 202 bits (102), Expect = 3e-49 Identities = 118/121 (97%), Gaps = 2/121 (1%) Strand = Plus / Plus Query: 59 cacgccgga-ccttgtcgatcggttaaggggggcgacgatggccaaggacatcgaggcgg 117 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 37 cacgccggaaccttgtcgatcggttaaggggg-cgacgatggccaaggacatcgaggcgg 95 Query: 118 ngccacccggcggggagtacgcggccaaggactactccgacccgccgccggcgccgctct 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 cgccacccggcggggagtacgcggccaaggactactccgacccgccgccggcgccgctct 155 Query: 178 t 178 | Sbjct: 156 t 156
>ref|XM_473219.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 75.8 bits (38), Expect = 4e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 37 ggcggggagtacatggcgaaggactactccgacccgccgccggcgccgct 86
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 4e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 26072810 ggcggggagtacatggcgaaggactactccgacccgccgccggcgccgct 26072859 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 142 ccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| |||||||||||||||||||||| Sbjct: 8907775 ccaaggactacaccgacccgccgccggcgccgct 8907742
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 75.8 bits (38), Expect = 4e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 107137 ggcggggagtacatggcgaaggactactccgacccgccgccggcgccgct 107186
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 69.9 bits (35), Expect = 3e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 125 cggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| ||| |||||||||||| | |||||||||||||||||||| Sbjct: 155 cggcggggagttcgccgccaaggactacacggacccgccgccggcgccgct 205
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 150 gagttcgcggccaaggactacacggacccgccgccggcgccgct 193
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 152 gagttcgcggccaaggactacacggacccgccgccggcgccgct 195
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 153 gagttcgcggccaaggactacacggacccgccgccggcgccgct 196
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 15353014 gagttcgcggccaaggactacacggacccgccgccggcgccgct 15353057 Score = 46.1 bits (23), Expect = 0.036 Identities = 29/31 (93%) Strand = Plus / Plus Query: 146 ggactactccgacccgccgccggcgccgctc 176 ||||||| |||||||||||||||||||||| Sbjct: 15305521 ggactacatcgacccgccgccggcgccgctc 15305551 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgctc 176 ||||||||||||||||||||| Sbjct: 15315613 gacccgccgccggcgccgctc 15315633
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 60013 gagttcgcggccaaggactacacggacccgccgccggcgccgct 60056 Score = 46.1 bits (23), Expect = 0.036 Identities = 29/31 (93%) Strand = Plus / Plus Query: 146 ggactactccgacccgccgccggcgccgctc 176 ||||||| |||||||||||||||||||||| Sbjct: 12520 ggactacatcgacccgccgccggcgccgctc 12550 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgctc 176 ||||||||||||||||||||| Sbjct: 22612 gacccgccgccggcgccgctc 22632
>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0475E07 Length = 139961 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 139027 gagttcgcggccaaggactacacggacccgccgccggcgccgct 139070 Score = 46.1 bits (23), Expect = 0.036 Identities = 29/31 (93%) Strand = Plus / Plus Query: 146 ggactactccgacccgccgccggcgccgctc 176 ||||||| |||||||||||||||||||||| Sbjct: 91534 ggactacatcgacccgccgccggcgccgctc 91564 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgctc 176 ||||||||||||||||||||| Sbjct: 101626 gacccgccgccggcgccgctc 101646
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 150 gagttcgcggccaaggactacacggacccgccgccggcgccgct 193
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 150 gagttcgcggccaaggactacacggacccgccgccggcgccgct 193
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 152 gagttcgcggccaaggactacacggacccgccgccggcgccgct 195
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 132 gagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||| |||||||||||||||| | |||||||||||||||||||| Sbjct: 153 gagttcgcggccaaggactacacggacccgccgccggcgccgct 196
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 61.9 bits (31), Expect = 6e-07 Identities = 37/39 (94%) Strand = Plus / Plus Query: 137 cgcggccaaggactactccgacccgccgccggcgccgct 175 |||||||||||||||| | |||||||||||||||||||| Sbjct: 145 cgcggccaaggactacacggacccgccgccggcgccgct 183
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 142 ccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| |||||||||||||||||||||| Sbjct: 41 ccaaggactacaccgacccgccgccggcgccgct 74
>ref|XM_466869.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1214 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 ||||| |||| | |||| ||||||||| |||||||||||||||||||||| Sbjct: 101 ggcggcgagttctcggcgaaggactacaccgacccgccgccggcgccgct 150
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 142 ccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| |||||||||||||||||||||| Sbjct: 92084 ccaaggactacaccgacccgccgccggcgccgct 92051
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 ||||| |||| | |||| ||||||||| |||||||||||||||||||||| Sbjct: 25181473 ggcggcgagttctcggcgaaggactacaccgacccgccgccggcgccgct 25181522
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 ||||| |||| | |||| ||||||||| |||||||||||||||||||||| Sbjct: 81866 ggcggcgagttctcggcgaaggactacaccgacccgccgccggcgccgct 81915
>dbj|AK120386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073J03, full insert sequence Length = 616 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 ||||| |||| | |||| ||||||||| |||||||||||||||||||||| Sbjct: 106 ggcggcgagttctcggcgaaggactacaccgacccgccgccggcgccgct 155
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 142 ccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| |||||||||||||||||||||| Sbjct: 27 ccaaggactacaccgacccgccgccggcgccgct 60
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 142 ccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| |||||||||||||||||||||| Sbjct: 140 ccaaggactacaccgacccgccgccggcgccgct 173
>dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E03, full insert sequence Length = 1214 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 126 ggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 ||||| |||| | |||| ||||||||| |||||||||||||||||||||| Sbjct: 101 ggcggcgagttctcggcgaaggactacaccgacccgccgccggcgccgct 150
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 142 ccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| |||||||||||||||||||||| Sbjct: 134 ccaaggactacaccgacccgccgccggcgccgct 167
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 142 ccaaggactactccgacccgccgccggcgccgct 175 ||||||||||| |||||||||||||||||||||| Sbjct: 128 ccaaggactacaccgacccgccgccggcgccgct 161
>gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence Length = 1215 Score = 58.0 bits (29), Expect = 1e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 139 cggccaaggactactccgacccgccgccggcgccgct 175 |||||||||||||| ||||||| |||||||||||||| Sbjct: 142 cggccaaggactacaccgaccctccgccggcgccgct 178
>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete cds Length = 1171 Score = 58.0 bits (29), Expect = 1e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 139 cggccaaggactactccgacccgccgccggcgccgct 175 |||||||||||||| ||||||| |||||||||||||| Sbjct: 134 cggccaaggactacaccgaccctccgccggcgccgct 170
>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA, complete cds Length = 1235 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 142 ccaaggactactccgacccgccgccggcgccg 173 ||||||||||||| |||||||||||||||||| Sbjct: 95 ccaaggactactcggacccgccgccggcgccg 126
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 137 cgcggccaaggactactccgacccgccgccggcgccgct 175 |||||||||||||||| | |||||||||||||| ||||| Sbjct: 119 cgcggccaaggactacacggacccgccgccggccccgct 157
>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete cds Length = 1156 Score = 52.0 bits (26), Expect = 6e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 139 cggccaaggactactccgacccgccgccggcgccgctc 176 |||||||||||||| | ||||| ||||||||||||||| Sbjct: 124 cggccaaggactacacggaccctccgccggcgccgctc 161
>gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds Length = 1104 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 143 caaggactactccgacccgccgccggcgccgct 175 |||||||||||| |||||||| ||||||||||| Sbjct: 42 caaggactactcggacccgcccccggcgccgct 74 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 atggccaaggacatcgaggc 115 |||||||||||||||||||| Sbjct: 4 atggccaaggacatcgaggc 23
>gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protein (pip2-5) mRNA, complete cds Length = 1207 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 143 caaggactactccgacccgccgccggcgccgct 175 |||||||||||| |||||||| ||||||||||| Sbjct: 97 caaggactactcggacccgcccccggcgccgct 129 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 atggccaaggacatcgaggc 115 |||||||||||||||||||| Sbjct: 59 atggccaaggacatcgaggc 78
>emb|AJ566319.1|FSY566319 Ficus sycomorus microsatellite DNA, clone FIGT06H05F Length = 292 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 144 aaggactactccgacccgccgccggcgccgct 175 ||||||||| ||||||||||||||||||||| Sbjct: 36 aaggactaccacgacccgccgccggcgccgct 5
>ref|NM_187081.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 46.1 bits (23), Expect = 0.036 Identities = 29/31 (93%) Strand = Plus / Plus Query: 146 ggactactccgacccgccgccggcgccgctc 176 ||||||| |||||||||||||||||||||| Sbjct: 142 ggactacatcgacccgccgccggcgccgctc 172
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 46.1 bits (23), Expect = 0.036 Identities = 44/51 (86%) Strand = Plus / Plus Query: 125 cggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||||| |||| ||| |||||||||||| | ||||| || ||||||||||| Sbjct: 89 cggcggcgagttcgctgccaaggactacacggaccctcccccggcgccgct 139
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 46.1 bits (23), Expect = 0.036 Identities = 44/51 (86%) Strand = Plus / Plus Query: 125 cggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||||| |||| ||| |||||||||||| | ||||| || ||||||||||| Sbjct: 37 cggcggcgagttcgctgccaaggactacacggaccctcccccggcgccgct 87
>emb|AJ001292.1|CPPIPA2 Craterostigma plantagineum mRNA for major intrinsic protein PIPa2 Length = 1189 Score = 46.1 bits (23), Expect = 0.036 Identities = 35/39 (89%) Strand = Plus / Plus Query: 143 caaggactactccgacccgccgccggcgccgctctttga 181 |||||||||| | || || |||||||||||||||||||| Sbjct: 155 caaggactacacagagccaccgccggcgccgctctttga 193
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 46.1 bits (23), Expect = 0.036 Identities = 44/51 (86%) Strand = Plus / Plus Query: 125 cggcggggagtacgcggccaaggactactccgacccgccgccggcgccgct 175 |||||| |||| ||| |||||||||||| | ||||| || ||||||||||| Sbjct: 108 cggcggcgagttcgctgccaaggactacacggaccctcccccggcgccgct 158
>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds Length = 1318 Score = 46.1 bits (23), Expect = 0.036 Identities = 29/31 (93%) Strand = Plus / Plus Query: 143 caaggactactccgacccgccgccggcgccg 173 |||||||||||| |||||||| ||||||||| Sbjct: 180 caaggactactcggacccgcccccggcgccg 210
>dbj|AK072632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132K03, full insert sequence Length = 1215 Score = 46.1 bits (23), Expect = 0.036 Identities = 29/31 (93%) Strand = Plus / Plus Query: 146 ggactactccgacccgccgccggcgccgctc 176 ||||||| |||||||||||||||||||||| Sbjct: 142 ggactacatcgacccgccgccggcgccgctc 172
>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd Length = 1251 Score = 46.1 bits (23), Expect = 0.036 Identities = 29/31 (93%) Strand = Plus / Plus Query: 143 caaggactactccgacccgccgccggcgccg 173 |||||||||||| |||||||| ||||||||| Sbjct: 100 caaggactactcggacccgcccccggcgccg 130
>gb|AY823263.1| Vitis vinifera aquaporin (PIP2-1) mRNA, complete cds Length = 1216 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 133 gacccgccgccggcgccgct 152
>ref|NM_196977.1| Oryza sativa (japonica cultivar-group) putative plant disease resistant protein (OSJNBa0001K12.15), mRNA Length = 5445 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ccgccgccggcgccgctctt 178 |||||||||||||||||||| Sbjct: 5159 ccgccgccggcgccgctctt 5140
>gb|AY189974.1| Juglans regia plasma intrinsic protein 2,2 mRNA, complete cds Length = 1278 Score = 40.1 bits (20), Expect = 2.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 gccaaggactactccgacccgccgccggcgcc 172 |||||||||||| |||||| ||||||||||| Sbjct: 174 gccaaggactaccacgacccaccgccggcgcc 205
>gb|AY189973.1| Juglans regia plasma intrinsic protein 2,1 mRNA, complete cds Length = 1278 Score = 40.1 bits (20), Expect = 2.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 gccaaggactactccgacccgccgccggcgcc 172 |||||||||||| |||||| ||||||||||| Sbjct: 123 gccaaggactaccacgacccaccgccggcgcc 154
>gb|AF141642.1|AF141642 Vitis berlandieri x Vitis rupestris putative aquaporin PIP2-1 (PIP2-1) mRNA, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 129 gacccgccgccggcgccgct 148
>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete sequence Length = 144724 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ccgccgccggcgccgctctt 178 |||||||||||||||||||| Sbjct: 95003 ccgccgccggcgccgctctt 95022
>gb|S63400.1| 11 beta-hydroxysteroid dehydrogenase [squirrel monkeys, fibroblasts, mRNA, 1149 nt] Length = 1149 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ggagcagcctcagcgcacta 33 |||||||||||||||||||| Sbjct: 316 ggagcagcctcagcgcacta 335
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ccgccgccggcgccgctctt 178 |||||||||||||||||||| Sbjct: 17097333 ccgccgccggcgccgctctt 17097314
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 21008845 gacccgccgccggcgccgct 21008864
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 100934 gacccgccgccggcgccgct 100953
>gb|AY789605.1| Elionurus muticus FL gene, partial cds Length = 927 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 actccgacccgccgccggcgccgc 174 ||||||||||||||||| |||||| Sbjct: 826 actccgacccgccgccgccgccgc 803
>dbj|AK109439.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H08, full insert sequence Length = 1247 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 107 gacccgccgccggcgccgct 126
>dbj|AK119719.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-G06, full insert sequence Length = 1066 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 104 gacccgccgccggcgccgct 123
>dbj|AK104786.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D11, full insert sequence Length = 1249 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 105 gacccgccgccggcgccgct 124
>gb|DQ341104.1| Rhododendron catawbiense aquaporin PIP2-1 mRNA, complete cds Length = 1192 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 144 aaggactactccgacccgccgccggcgc 171 ||||||||| ||||||||||||||||| Sbjct: 113 aaggactaccacgacccgccgccggcgc 140
>dbj|AK067792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118N06, full insert sequence Length = 1302 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 100 gacccgccgccggcgccgct 119
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0478E02 Length = 140715 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgct 175 |||||||||||||||||||| Sbjct: 30145 gacccgccgccggcgccgct 30164
>dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds Length = 1147 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ccgccgccggcgccgctctt 178 |||||||||||||||||||| Sbjct: 191 ccgccgccggcgccgctctt 210
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 cgacccgccgccggcgccgc 174 |||||||||||||||||||| Sbjct: 1659511 cgacccgccgccggcgccgc 1659530
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ccgccgccggcgccgctctt 178 |||||||||||||||||||| Sbjct: 17106373 ccgccgccggcgccgctctt 17106354
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gtacgcggccaaggactact 153 |||||||||||||||||||| Sbjct: 888168 gtacgcggccaaggactact 888149 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 cccgccgccggcgccgctc 176 ||||||||||||||||||| Sbjct: 2492098 cccgccgccggcgccgctc 2492116
>emb|AL352992.1|LMFL5213T Leishmania major Friedlin cosmid L5213T Length = 29074 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ggccaaggacatcgaggcgg 117 |||||||||||||||||||| Sbjct: 6577 ggccaaggacatcgaggcgg 6558
>ref|NM_190626.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1848 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 158 cccgccgccggcgccgctc 176 ||||||||||||||||||| Sbjct: 354 cccgccgccggcgccgctc 336
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgc 174 ||||||||||||||||||| Sbjct: 337985 gacccgccgccggcgccgc 338003
>ref|NM_010225.1| Mus musculus forkhead box F2 (Foxf2), mRNA Length = 2399 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 152 ctccgacccgccgccggcgccgc 174 |||||||||||||||| |||||| Sbjct: 98 ctccgacccgccgccgccgccgc 120
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gatggccaaggacatcgag 113 ||||||||||||||||||| Sbjct: 2950191 gatggccaaggacatcgag 2950209
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgc 174 ||||||||||||||||||| Sbjct: 337923 gacccgccgccggcgccgc 337941
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 156 gacccgccgccggcgccgc 174 ||||||||||||||||||| Sbjct: 338934 gacccgccgccggcgccgc 338952
>emb|AL590625.16| Mouse DNA sequence from clone RP23-467M8 on chromosome 13 Contains the Foxf2 gene for forkhead box F2, a novel gene and two CpG islands, complete sequence Length = 165745 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 152 ctccgacccgccgccggcgccgc 174 |||||||||||||||| |||||| Sbjct: 16956 ctccgacccgccgccgccgccgc 16978
>dbj|AK132385.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022445M22 product:forkhead box F2, full insert sequence Length = 2361 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 152 ctccgacccgccgccggcgccgc 174 |||||||||||||||| |||||| Sbjct: 62 ctccgacccgccgccgtcgccgc 84
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 cccgccgccggcgccgctc 176 ||||||||||||||||||| Sbjct: 36640588 cccgccgccggcgccgctc 36640606
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 gggcgacgatggccaagga 106 ||||||||||||||||||| Sbjct: 3730743 gggcgacgatggccaagga 3730725
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 cccgccgccggcgccgctc 176 ||||||||||||||||||| Sbjct: 113854 cccgccgccggcgccgctc 113872
>emb|X66004.1|SBATPD S.bicolor mRNA for ATPase (delta subunit) Length = 1105 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 152 ctccgacccgccgccggcgccgc 174 |||||||||||||||| |||||| Sbjct: 85 ctccgacccgccgccgccgccgc 107
>dbj|AK100337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081E01, full insert sequence Length = 2693 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 158 cccgccgccggcgccgctc 176 ||||||||||||||||||| Sbjct: 691 cccgccgccggcgccgctc 673
>dbj|AK071217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085L22, full insert sequence Length = 1301 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 158 cccgccgccggcgccgctc 176 ||||||||||||||||||| Sbjct: 370 cccgccgccggcgccgctc 352
>emb|Y12293.1|MMY12293 Mus musculus lun gene, exon 1 (and joined CDS) Length = 2003 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 152 ctccgacccgccgccggcgccgc 174 |||||||||||||||| |||||| Sbjct: 409 ctccgacccgccgccgccgccgc 431
>gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, complete cds Length = 1071 Score = 38.2 bits (19), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 141 gccaaggactactccgacccgccgccggcgccgct 175 |||||||||||| |||||| || ||||||||||| Sbjct: 65 gccaaggactacctcgaccctcctccggcgccgct 99 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,014,802 Number of Sequences: 3902068 Number of extensions: 1014802 Number of successful extensions: 74290 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71677 Number of HSP's gapped (non-prelim): 2612 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
