ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet117a05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483799.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1710 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Plus Query: 157 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 216 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 235 Query: 217 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcgcgcatggccgacgccct 276 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 236 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 295 Query: 277 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 327 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 296 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 346 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 416 ctcgccggcgaggactgcggcgaggaggcggagaagctcatgcagcagctcataccctac 475 |||||||| ||||| ||| ||||||||||||||| | ||||||| ||| | |||||| Sbjct: 432 ctcgccggagaggagtgctcggaggaggcggagaaggtgatgcagctcctcgtcccctac 491 Query: 476 accggcgtc 484 ||||||||| Sbjct: 492 accggcgtc 500
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 157 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 216 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 28157913 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 28157854 Query: 217 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcgcgcatggccgacgccct 276 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 28157853 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 28157794 Query: 277 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 327 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28157793 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 28157743 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Minus Query: 416 ctcgccggcgaggactgcggcgaggaggcggagaagctcatgcagcagctcataccctac 475 |||||||| ||||| ||| ||||||||||||||| | ||||||| ||| | |||||| Sbjct: 28157657 ctcgccggagaggagtgctcggaggaggcggagaaggtgatgcagctcctcgtcccctac 28157598 Query: 476 accggcgtc 484 ||||||||| Sbjct: 28157597 accggcgtc 28157589
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 157 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 216 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 155408 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 155349 Query: 217 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcgcgcatggccgacgccct 276 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 155348 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 155289 Query: 277 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 327 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 155288 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 155238 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Minus Query: 416 ctcgccggcgaggactgcggcgaggaggcggagaagctcatgcagcagctcataccctac 475 |||||||| ||||| ||| ||||||||||||||| | ||||||| ||| | |||||| Sbjct: 155152 ctcgccggagaggagtgctcggaggaggcggagaaggtgatgcagctcctcgtcccctac 155093 Query: 476 accggcgtc 484 ||||||||| Sbjct: 155092 accggcgtc 155084
>dbj|AK109443.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A03, full insert sequence Length = 1649 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Plus Query: 157 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 216 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 210 Query: 217 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcgcgcatggccgacgccct 276 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 211 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 270 Query: 277 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 327 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 271 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 321 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 416 ctcgccggcgaggactgcggcgaggaggcggagaagctcatgcagcagctcataccctac 475 |||||||| ||||| ||| ||||||||||||||| | ||||||| ||| | |||||| Sbjct: 407 ctcgccggagaggagtgctcggaggaggcggagaaggtgatgcagctcctcgtcccctac 466 Query: 476 accggcgtc 484 ||||||||| Sbjct: 467 accggcgtc 475
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 157 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 216 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 41386 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 41327 Query: 217 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcgcgcatggccgacgccct 276 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 41326 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 41267 Query: 277 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 327 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 41266 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 41216 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Minus Query: 416 ctcgccggcgaggactgcggcgaggaggcggagaagctcatgcagcagctcataccctac 475 |||||||| ||||| ||| ||||||||||||||| | ||||||| ||| | |||||| Sbjct: 41130 ctcgccggagaggagtgctcggaggaggcggagaaggtgatgcagctcctcgtcccctac 41071 Query: 476 accggcgtc 484 ||||||||| Sbjct: 41070 accggcgtc 41062
>dbj|AK063515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G07, full insert sequence Length = 2418 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Plus Query: 157 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 216 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 292 Query: 217 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcgcgcatggccgacgccct 276 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 293 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 352 Query: 277 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 327 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 353 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 403 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 416 ctcgccggcgaggactgcggcgaggaggcggagaagctcatgcagcagctcataccctac 475 |||||||| ||||| ||| ||||||||||||||| | ||||||| ||| | |||||| Sbjct: 489 ctcgccggagaggagtgctcggaggaggcggagaaggtgatgcagctcctcgtcccctac 548 Query: 476 accggcgtc 484 ||||||||| Sbjct: 549 accggcgtc 557
>ref|XM_465706.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1383 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 ||||||||||||||||||||| ||||||| Sbjct: 228 cttctacccgctcgccggccgcatccgcc 256
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 294 acttctacccgctcgccggccggatccgc 322 ||||||||||||||||||||||| ||||| Sbjct: 70409 acttctacccgctcgccggccggctccgc 70437
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 294 acttctacccgctcgccggccggatccgc 322 ||||||||||||||||||||||| ||||| Sbjct: 14439701 acttctacccgctcgccggccggctccgc 14439729 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 275 ctcggggacgcgctcgcctacttctacccgctcgccggccg 315 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 3209016 ctcgcggaggcgctcgtccactactacccgctcgccggccg 3209056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 ||||||||||||||||||||| ||||||| Sbjct: 16905950 cttctacccgctcgccggccgcatccgcc 16905978 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 |||||||||||||||| |||| ||||||| Sbjct: 16935108 cttctacccgctcgccagccgcatccgcc 16935136 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 16850150 cttctacccgctcgccggccg 16850170 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 16826408 cttctacccgctcgccggccg 16826428 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 16802268 cttctacccgctcgccggccg 16802288 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 16793049 cttctacccgctcgccggccg 16793029 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 gcggaggtgctcgaggccgccgcc 394 ||||||| |||||||||||||||| Sbjct: 26904371 gcggaggcgctcgaggccgccgcc 26904394
>dbj|AP004132.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1089_A02 Length = 117908 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 ||||||||||||||||||||| ||||||| Sbjct: 48055 cttctacccgctcgccggccgcatccgcc 48083 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 |||||||||||||||| |||| ||||||| Sbjct: 77213 cttctacccgctcgccagccgcatccgcc 77241
>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036H07 Length = 149797 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 ||||||||||||||||||||| ||||||| Sbjct: 107007 cttctacccgctcgccggccgcatccgcc 107035 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 |||||||||||||||| |||| ||||||| Sbjct: 136165 cttctacccgctcgccagccgcatccgcc 136193 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 51207 cttctacccgctcgccggccg 51227 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 27465 cttctacccgctcgccggccg 27485 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 3325 cttctacccgctcgccggccg 3345
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 379 gctcgaggccgccgccgagggcgtatccgtggacg 413 |||||| |||||||||||||||||| |||| |||| Sbjct: 69914 gctcgaagccgccgccgagggcgtacccgtcgacg 69880
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 379 gctcgaggccgccgccgagggcgtatccgtggacg 413 |||||| |||||||||||||||||| |||| |||| Sbjct: 76537 gctcgaagccgccgccgagggcgtacccgtcgacg 76503
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 334 cgacggcggtgcgctgtacgtcgatg 359 ||||||||||| |||||||||||||| Sbjct: 2587585 cgacggcggtgtgctgtacgtcgatg 2587610
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 294 acttctacccgctcgccggccggatc 319 |||||||||| ||||||||||||||| Sbjct: 93084 acttctaccccctcgccggccggatc 93109
>emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment 1/24 Length = 311050 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 232 cgccggcgacttccaagacgtc 253 |||||||||||||||||||||| Sbjct: 197039 cgccggcgacttccaagacgtc 197018
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 cttcgacctgccctacatcacc 187 |||||||||||||||||||||| Sbjct: 2927589 cttcgacctgccctacatcacc 2927610
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 294 acttctacccgctcgccggccggatc 319 |||||||||| ||||||||||||||| Sbjct: 24729404 acttctaccccctcgccggccggatc 24729379 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ggacgagctcgccggcgagg 428 |||||||||||||||||||| Sbjct: 25402140 ggacgagctcgccggcgagg 25402121
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 294 acttctacccgctcgccggccggatc 319 |||||||||| ||||||||||||||| Sbjct: 8091347 acttctaccctctcgccggccggatc 8091372
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 294 acttctacccgctcgccggccggatc 319 |||||||||| ||||||||||||||| Sbjct: 25119 acttctaccctctcgccggccggatc 25144
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 294 acttctacccgctcgccggccggatc 319 |||||||||| ||||||||||||||| Sbjct: 25041074 acttctaccccctcgccggccggatc 25041049 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ggacgagctcgccggcgagg 428 |||||||||||||||||||| Sbjct: 25720810 ggacgagctcgccggcgagg 25720791
>ref|NM_185277.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 275 ctcggggacgcgctcgcctacttctacccgctcgccggccg 315 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 199 ctcgcggaggcgctcgtccactactacccgctcgccggccg 239
>ref|XM_465709.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccggatccgcc 323 |||||||||||||||| |||| ||||||| Sbjct: 261 cttctacccgctcgccagccgcatccgcc 289
>ref|XM_465703.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1404 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 246 cttctacccgctcgccggccg 266
>ref|XM_465699.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 252 cttctacccgctcgccggccg 272
>ref|XM_465691.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1791 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 328 cttctacccgctcgccggccg 348
>ref|XM_465687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1518 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 258 cttctacccgctcgccggccg 278
>ref|XM_449988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2811 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 gcggcgaggaggcggagaagc 452 ||||||||||||||||||||| Sbjct: 259 gcggcgaggaggcggagaagc 239
>ref|XM_473803.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 240 cttctacccgctcgccggccg 260
>ref|XM_470761.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ccctacatcaccttctactac 196 ||||||||||||||||||||| Sbjct: 501 ccctacatcaccttctactac 521
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 275 ctcggggacgcgctcgcctacttctacccgctcgccggccg 315 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 86733 ctcgcggaggcgctcgtccactactacccgctcgccggccg 86773
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ccctacatcaccttctactac 196 ||||||||||||||||||||| Sbjct: 14939615 ccctacatcaccttctactac 14939595
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ccctacatcaccttctactac 196 ||||||||||||||||||||| Sbjct: 103147 ccctacatcaccttctactac 103167
>gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosome 19, complete sequence Length = 180516 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 gggaggagggtgcggaggtgc 380 ||||||||||||||||||||| Sbjct: 160220 gggaggagggtgcggaggtgc 160200
>ref|XM_802923.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503953.50) partial mRNA Length = 3318 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ggcgaggactgcggcgaggaggcgg 446 |||||||||||||| |||||||||| Sbjct: 2845 ggcgaggactgcggggaggaggcgg 2869
>ref|XM_814877.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507063.110) partial mRNA Length = 3318 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ggcgaggactgcggcgaggaggcgg 446 |||||||||||||| |||||||||| Sbjct: 2845 ggcgaggactgcggggaggaggcgg 2869
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 119849 cttctacccgctcgccggccg 119829
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 47872 cttctacccgctcgccggccg 47852
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 30644141 cttctacccgctcgccggccg 30644121 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 tggacgagctcgccggcgag 427 |||||||||||||||||||| Sbjct: 19950553 tggacgagctcgccggcgag 19950534
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 gcggcgaggaggcggagaagc 452 ||||||||||||||||||||| Sbjct: 825116 gcggcgaggaggcggagaagc 825096
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 ttctacccgctcgccggccgg 316 ||||||||||||||||||||| Sbjct: 4297826 ttctacccgctcgccggccgg 4297846
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ccctacatcaccttctactac 196 ||||||||||||||||||||| Sbjct: 14934149 ccctacatcaccttctactac 14934129
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 ttctacccgctcgccggccgg 316 ||||||||||||||||||||| Sbjct: 143047 ttctacccgctcgccggccgg 143067
>dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0501E09 Length = 150604 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 gcggcgaggaggcggagaagc 452 ||||||||||||||||||||| Sbjct: 110455 gcggcgaggaggcggagaagc 110435
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 ggcgaggaggcggagaagctc 454 ||||||||||||||||||||| Sbjct: 83262 ggcgaggaggcggagaagctc 83282
>gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, complete sequence Length = 196556 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 gggaggagggtgcggaggtgc 380 ||||||||||||||||||||| Sbjct: 176874 gggaggagggtgcggaggtgc 176894
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 98392 cttctacccgctcgccggccg 98412 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 74650 cttctacccgctcgccggccg 74670 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 50510 cttctacccgctcgccggccg 50530 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 41291 cttctacccgctcgccggccg 41271
>dbj|AK109116.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C07, full insert sequence Length = 1183 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 ttctacccgctcgccggccgg 316 ||||||||||||||||||||| Sbjct: 302 ttctacccgctcgccggccgg 322
>dbj|AK105836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E12, full insert sequence Length = 1511 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 250 cttctacccgctcgccggccg 270
>dbj|AK103832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A21, full insert sequence Length = 1790 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 327 cttctacccgctcgccggccg 347
>dbj|AK073983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075C14, full insert sequence Length = 2811 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 gcggcgaggaggcggagaagc 452 ||||||||||||||||||||| Sbjct: 259 gcggcgaggaggcggagaagc 239
>dbj|AK073495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F12, full insert sequence Length = 1526 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cttctacccgctcgccggccg 315 ||||||||||||||||||||| Sbjct: 265 cttctacccgctcgccggccg 285
>dbj|AK069332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L17, full insert sequence Length = 1375 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ccctacatcaccttctactac 196 ||||||||||||||||||||| Sbjct: 501 ccctacatcaccttctactac 521
>dbj|AK065455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023H14, full insert sequence Length = 3335 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 gcggcgaggaggcggagaagc 452 ||||||||||||||||||||| Sbjct: 249 gcggcgaggaggcggagaagc 229
>dbj|AK059327.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A03, full insert sequence Length = 1760 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 gcggcgaggaggcggagaagc 452 ||||||||||||||||||||| Sbjct: 261 gcggcgaggaggcggagaagc 241
>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence Length = 232605 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 ggcgaggaggcggagaagctc 454 ||||||||||||||||||||| Sbjct: 44255 ggcgaggaggcggagaagctc 44275
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 cgatggggaggagggtgcgga 375 ||||||||||||||||||||| Sbjct: 932185 cgatggggaggagggtgcgga 932165
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 275 ctcggggacgcgctcgcctacttctacccgctcgccggccg 315 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 2840 ctcgcggaggcgctcgtccactactacccgctcgccggccg 2880
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 104 gccgtcgcggtcaccggcacccgcacggtggc 135 |||||||| | ||||||||||||| ||||||| Sbjct: 227288 gccgtcgccgccaccggcacccgctcggtggc 227319
>ref|XM_472374.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 951 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tggacgagctcgccggcgag 427 |||||||||||||||||||| Sbjct: 80 tggacgagctcgccggcgag 99
>ref|XM_367871.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG07775.4) partial mRNA Length = 642 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gtggacgagctcgccggcga 426 |||||||||||||||||||| Sbjct: 426 gtggacgagctcgccggcga 445
>gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0485F09, complete sequence Length = 161276 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ggacgagctcgccggcgagg 428 |||||||||||||||||||| Sbjct: 9031 ggacgagctcgccggcgagg 9012
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ggacgagctcgccggcgagg 428 |||||||||||||||||||| Sbjct: 129153 ggacgagctcgccggcgagg 129134
>ref|XM_391470.1| Gibberella zeae PH-1 chromosome linkage group 14 hypothetical protein (FG11294.1) partial mRNA Length = 3081 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 cgaggactgcggcgaggagg 443 |||||||||||||||||||| Sbjct: 1969 cgaggactgcggcgaggagg 1950
>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12 Length = 299350 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 catggccgacgccctcggggacgc 285 ||||||||||||| |||||||||| Sbjct: 186656 catggccgacgccatcggggacgc 186633
>ref|XM_845401.1| PREDICTED: Canis familiaris similar to Inner nuclear membrane protein Man1 (LEM domain containing protein 3) (LOC608380), mRNA Length = 4231 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 gaggactgcggcgaggaggcggag 448 |||||| ||||||||||||||||| Sbjct: 109 gaggacggcggcgaggaggcggag 132
>ref|XM_548206.2| PREDICTED: Canis familiaris similar to WFIKKN2 protein, transcript variant 1 (LOC491086), mRNA Length = 1728 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gcgaggactgcggcgaggag 442 |||||||||||||||||||| Sbjct: 998 gcgaggactgcggcgaggag 1017
>emb|CR659542.2|CNS0F7VG Tetraodon nigroviridis full-length cDNA Length = 716 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 aagctcatgcagcagctcat 468 |||||||||||||||||||| Sbjct: 83 aagctcatgcagcagctcat 102
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 ggagatgcgcgggctgccgc 99 |||||||||||||||||||| Sbjct: 94121 ggagatgcgcgggctgccgc 94140
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cgcgcgcatggccgacgccc 275 |||||||||||||||||||| Sbjct: 974297 cgcgcgcatggccgacgccc 974278
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 tggacgagctcgccggcgag 427 |||||||||||||||||||| Sbjct: 13216 tggacgagctcgccggcgag 13197
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 tggacgagctcgccggcgag 427 |||||||||||||||||||| Sbjct: 105361 tggacgagctcgccggcgag 105342
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 tggccgacgccctcggggacgcgctcgc 291 |||| ||||| ||||||||||||||||| Sbjct: 4052659 tggcggacgcgctcggggacgcgctcgc 4052632
>gb|AC079341.6| Homo sapiens BAC clone RP11-63B13 from 4, complete sequence Length = 149819 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 cctgccctacatcaccttctacta 195 |||||||||| ||||||||||||| Sbjct: 140928 cctgccctacttcaccttctacta 140951
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 gccgtcgcggtcaccggcacccgc 127 |||||||| ||||||||||||||| Sbjct: 2808185 gccgtcgccgtcaccggcacccgc 2808162
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 409 ggacgagctcgccggcgaggactgcggcgagg 440 ||||| ||||||||||||| || ||||||||| Sbjct: 3738139 ggacgtgctcgccggcgagcacggcggcgagg 3738170
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1001_D02 Length = 129081 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 gcggaggtgctcgaggccgccgcc 394 ||||||| |||||||||||||||| Sbjct: 82914 gcggaggcgctcgaggccgccgcc 82937
>dbj|AK108017.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H11, full insert sequence Length = 587 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ggacgagctcgccggcgagg 428 |||||||||||||||||||| Sbjct: 386 ggacgagctcgccggcgagg 367
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tggccgacgccctcggggac 283 |||||||||||||||||||| Sbjct: 1097510 tggccgacgccctcggggac 1097529 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 tggccgtggacaacggagatgcgc 89 |||||||||||||||| ||||||| Sbjct: 235398 tggccgtggacaacggcgatgcgc 235421
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 gggaggagggtgcggaggtgctcg 383 |||||||||| ||||||||||||| Sbjct: 948153 gggaggagggggcggaggtgctcg 948176
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 ccgtcgcggtcaccggcacccgca 128 |||||| ||||||||||||||||| Sbjct: 5591447 ccgtcgtggtcaccggcacccgca 5591470 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,246,098 Number of Sequences: 3902068 Number of extensions: 3246098 Number of successful extensions: 83959 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81029 Number of HSP's gapped (non-prelim): 2924 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
