ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet117a02 |
|---|---|
| Clone Library Name | barley_pub |
>UBP4_HUMAN (Q13107) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)| (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein homolog) Length = 963 Score = 33.1 bits (74), Expect = 0.42 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = +2 Query: 143 CHRISRSIYRFMPDCTITAPTG-AAVNGSGGSCNGGD-------QVWEELYGEAQADAED 298 C RISR + + +PD ++P A NGS SC G D + +E E + ED Sbjct: 624 CDRISRYVKQPLPDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEGSGED 683 Query: 299 EP 304 EP Sbjct: 684 EP 685
>SAT1_ARATH (Q42588) Serine acetyltransferase 1 (EC 2.3.1.30) (AtSAT-1) (SAT-p)| (AtSERAT2;1) Length = 314 Score = 32.3 bits (72), Expect = 0.71 Identities = 18/73 (24%), Positives = 29/73 (39%) Frame = +2 Query: 248 DQVWEELYGEAQADAEDEPLLGMLYYELVXXXXXXXXXXXXXXXXXXCIQGALPQDALRD 427 D VW ++ EA++D + EP+L YY + LP + L + Sbjct: 46 DDVWIKMLEEAKSDVKQEPILSNYYYASITSHRSLESALAHILSVKLSNLN-LPSNTLFE 104 Query: 428 ILVGALAAHPEAI 466 + + L PE I Sbjct: 105 LFISVLEESPEII 117
>CYSE_SALTY (P29847) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 32.0 bits (71), Expect = 0.93 Identities = 21/81 (25%), Positives = 34/81 (41%) Frame = +2 Query: 236 CNGGDQVWEELYGEAQADAEDEPLLGMLYYELVXXXXXXXXXXXXXXXXXXCIQGALPQD 415 C + VW+ + EA+A A+ EP+L Y+ + +P Sbjct: 3 CEELEIVWKNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLA-SPIMPAI 61 Query: 416 ALRDILVGALAAHPEAIRPRA 478 A+R+++ A AA PE I A Sbjct: 62 AIREVVEEAYAADPEMIASAA 82
>CYSE_SHIFL (P0A9D7) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/82 (25%), Positives = 33/82 (40%) Frame = +2 Query: 233 SCNGGDQVWEELYGEAQADAEDEPLLGMLYYELVXXXXXXXXXXXXXXXXXXCIQGALPQ 412 SC + VW + EA+ A+ EP+L Y+ + +P Sbjct: 2 SCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLS-SPIMPA 60 Query: 413 DALRDILVGALAAHPEAIRPRA 478 A+R+++ A AA PE I A Sbjct: 61 IAIREVVEEAYAADPEMIASAA 82
>CYSE_ECOLI (P0A9D4) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/82 (25%), Positives = 33/82 (40%) Frame = +2 Query: 233 SCNGGDQVWEELYGEAQADAEDEPLLGMLYYELVXXXXXXXXXXXXXXXXXXCIQGALPQ 412 SC + VW + EA+ A+ EP+L Y+ + +P Sbjct: 2 SCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLS-SPIMPA 60 Query: 413 DALRDILVGALAAHPEAIRPRA 478 A+R+++ A AA PE I A Sbjct: 61 IAIREVVEEAYAADPEMIASAA 82
>CYSE_ECOL6 (P0A9D5) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/82 (25%), Positives = 33/82 (40%) Frame = +2 Query: 233 SCNGGDQVWEELYGEAQADAEDEPLLGMLYYELVXXXXXXXXXXXXXXXXXXCIQGALPQ 412 SC + VW + EA+ A+ EP+L Y+ + +P Sbjct: 2 SCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLS-SPIMPA 60 Query: 413 DALRDILVGALAAHPEAIRPRA 478 A+R+++ A AA PE I A Sbjct: 61 IAIREVVEEAYAADPEMIASAA 82
>CYSE_ECO57 (P0A9D6) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/82 (25%), Positives = 33/82 (40%) Frame = +2 Query: 233 SCNGGDQVWEELYGEAQADAEDEPLLGMLYYELVXXXXXXXXXXXXXXXXXXCIQGALPQ 412 SC + VW + EA+ A+ EP+L Y+ + +P Sbjct: 2 SCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLS-SPIMPA 60 Query: 413 DALRDILVGALAAHPEAIRPRA 478 A+R+++ A AA PE I A Sbjct: 61 IAIREVVEEAYAADPEMIASAA 82
>LRC24_HUMAN (Q50LG9) Leucine-rich repeat-containing protein 24 precursor| Length = 513 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = +3 Query: 51 GAAAVPSHFLSLAARGRTWQPASTSGTQHTPATASPDPSTGS 176 GAA VP L A+R + QPA PA + P P GS Sbjct: 352 GAARVPFRLLVNASRQQPQQPAQPPPPAARPAGSEPRPEAGS 393
>SAT3_ARATH (Q39218) Serine acetyltransferase 3, mitochondrial precursor (EC| 2.3.1.30) (AtSAT-3) (SAT-m) (AtSERAT2;2) Length = 376 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/73 (23%), Positives = 28/73 (38%) Frame = +2 Query: 248 DQVWEELYGEAQADAEDEPLLGMLYYELVXXXXXXXXXXXXXXXXXXCIQGALPQDALRD 427 D VW ++ EA++D EP++ YY LP + L D Sbjct: 108 DDVWAKIREEAKSDIAKEPIVS-AYYHASIVSQRSLEAALANTLSVKLSNLNLPSNTLFD 166 Query: 428 ILVGALAAHPEAI 466 + G L +P+ + Sbjct: 167 LFSGVLQGNPDIV 179
>GCYB1_MOUSE (O54865) Guanylate cyclase soluble subunit beta-1 (EC 4.6.1.2)| (GCS-beta-1) (Soluble guanylate cyclase small subunit) Length = 620 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Frame = +2 Query: 239 NGGDQVWEELYGEAQADAEDEPLLGMLY-----YELV 334 N G +VWE++ EAQ D E + L+ ++Y Y+LV Sbjct: 16 NYGPEVWEDIKKEAQLDEEGQFLVRIIYDDSKTYDLV 52
>GCYB1_RAT (P20595) Guanylate cyclase soluble subunit beta-1 (EC 4.6.1.2)| (GCS-beta-1) (Soluble guanylate cyclase small subunit) Length = 619 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Frame = +2 Query: 239 NGGDQVWEELYGEAQADAEDEPLLGMLY-----YELV 334 N G +VWE++ EAQ D E + L+ ++Y Y+LV Sbjct: 16 NYGPEVWEDIKKEAQLDEEGQFLVRIIYDDSKTYDLV 52
>GCYB1_HUMAN (Q02153) Guanylate cyclase soluble subunit beta-1 (EC 4.6.1.2)| (GCS-beta-1) (Soluble guanylate cyclase small subunit) (GCS-beta-3) Length = 619 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Frame = +2 Query: 239 NGGDQVWEELYGEAQADAEDEPLLGMLY-----YELV 334 N G +VWE++ EAQ D E + L+ ++Y Y+LV Sbjct: 16 NYGPEVWEDIKKEAQLDEEGQFLVRIIYDDSKTYDLV 52
>GCYB1_BOVIN (P16068) Guanylate cyclase soluble subunit beta-1 (EC 4.6.1.2)| (GCS-beta-1) (Soluble guanylate cyclase small subunit) Length = 619 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Frame = +2 Query: 239 NGGDQVWEELYGEAQADAEDEPLLGMLY-----YELV 334 N G +VWE++ EAQ D E + L+ ++Y Y+LV Sbjct: 16 NYGPEVWEDIKKEAQLDEEGQFLVRIIYDDSKTYDLV 52
>SAT4_ARATH (Q8W2B8) Serine acetyltransferase 4 (EC 2.3.1.30) (AtSAT-4)| (AtSERAT3;2) Length = 355 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 Query: 248 DQVWEELYGEAQADAEDEPLLGMLYY 325 D +W+ + EA+ +AE+EP+L Y Sbjct: 71 DPIWDSIREEAKLEAEEEPVLSSFLY 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,814,367 Number of Sequences: 219361 Number of extensions: 736382 Number of successful extensions: 3373 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3367 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
