>DDL_MYCSM (Q9ZGN0) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine|
           synthetase) (D-Ala-D-Ala ligase)
          Length = 373

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 159 DGKAVLIDVRPEDLRVKDG-IPDLRRAARSKYASVASPEIKGPTKKLLKGGNEIDDALVA 335
           DG  VL D RPE L + DG +P +  A+ ++ A  A+P   G   +LL  GN   + L A
Sbjct: 53  DGSWVLTDGRPETLAITDGKLPAVTEASGTELALPAAPNRSG---QLLALGNGPGEILAA 109

Query: 336 V 338
           V
Sbjct: 110 V 110

>PUR1_YEAST (P04046) Amidophosphoribosyltransferase (EC 2.4.2.14) (Glutamine|
           phosphoribosylpyrophosphate amidotransferase) (ATASE)
          Length = 510

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
 Frame = +3

Query: 171 VLIDVRPEDLRVKDGIPDLRRAARSKYASV-ASPEIKGPTKKLLKGGNEI---DDALVAV 338
           +L  ++PED+ V   +PD  R    + A+V   P  +G  K    G   I       V+ 
Sbjct: 293 ILKQLKPEDIDVVIPVPDTARTCALECANVLGKPYREGFVKNRYVGRTFIMPNQRERVSS 352

Query: 339 VIRNLKLVKGD---SKVIIMD---ANGTRSKSIARLLKKLGVQQPY 458
           V R L  ++ +    KV+I+D     GT SK I  + K+ G  + Y
Sbjct: 353 VRRKLNPMESEFKGKKVLIVDDSIVRGTTSKEIVNMAKESGATKVY 398

>GLMM_FRATT (Q5NII8) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 443

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 258 VASPEIKGPTKKLLKGGNEIDDALVAVVIRNLKLVKGDSKVIIMDANGTRSKSIARLLKK 437
           +  P+ K  + K+L   N ID+ + ++  R  K V    KV++  A+G  S +   LL K
Sbjct: 137 IYQPQFKFGSYKIL--ANAIDEYIESIYSRFAKFVNYKGKVVVDCAHGAASHNFEALLDK 194

Query: 438 LGV 446
            G+
Sbjct: 195 FGI 197

>KGUA_CLOPE (Q8XJK8) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 215

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 19/78 (24%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +3

Query: 102 YGGYSGDLSPESTLELLKSDGKAVLIDVRPED-LRVKDGIPDLRRAARSKYASVASPEIK 278
           YG Y G  +P+S++E +  +GK V++++  +  L+VK+      +A    +  +  P ++
Sbjct: 82  YGNYYG--TPKSSVEKMLDEGKNVILEIDIQGALKVKE------KATDGVFIFILPPSME 133

Query: 279 GPTKKLLKGGNEIDDALV 332
              ++++K G+E  ++L+
Sbjct: 134 ELKQRIIKRGSETPESLM 151

>Y034_PYRHO (O57746) UPF0284 protein PH0034|
          Length = 335

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 33/128 (25%), Positives = 51/128 (39%)
 Frame = +3

Query: 60  GGSTTIGISYWLFAYGGYSGDLSPESTLELLKSDGKAVLIDVRPEDLRVKDGIPDLRRAA 239
           GG+TT     W   Y   +   SPE+  EL              ++  +K+G        
Sbjct: 144 GGTTTAQAILWALGYEAKTSSASPENPQEL--------------KEKVIKEGF------- 182

Query: 240 RSKYASVASPEIKGPTKKLLKGGNEIDDALVAVVIRNLKLVKGDSKVIIMDANGTRSKSI 419
             K   +    +K    + LK   E  D ++A V+  L L  G   V+   A GT+  ++
Sbjct: 183 --KRVGIEKGGLKDKPLEALK---EFGDPMIATVL-GLSLGFGGDVVL---AGGTQMLAV 233

Query: 420 ARLLKKLG 443
           + LLK LG
Sbjct: 234 SALLKSLG 241

>XRN2_SCHPO (P40848) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein dhp1)|
          Length = 991

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 213 GIPDLRRAARSKYASVASPEIKGPTKKLLKGGNEIDDAL 329
           G+P L R    K+A V +P I+ PT+K L  G EI+  L
Sbjct: 2   GVPALFRLLSRKFAKVITPVIEAPTEK-LPDGTEIEPDL 39

>Y623_DROME (Q9VFB7) Hypothetical protein CG6623|
          Length = 1145

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +3

Query: 120  DLSPEST--LELLKSDGKAVLIDVRPEDLRVKDGIPDLRRAARSKYASVASPEI 275
            DL+PES   +E+ KS     L +++ E L+ +  +P ++     KYAS++ P++
Sbjct: 946  DLNPESQQPIEIYKSLTVTYLYEIQVEPLKTEHELPVVKVHFVIKYASLSQPDV 999

>Y167_RICCN (Q92JA0) UPF0176 protein RC0167|
          Length = 247

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +3

Query: 333 AVVIRNLKLVKGDSKVIIMDANGTRSKSIARLLKKLGVQQPYLVKGG 473
           A V +N +L+KG  K+ ++   G R +    LLK +G  + Y +KGG
Sbjct: 160 AWVQQNQELLKG-KKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGG 205

>THT1_CAEEL (P91247) Putative thiosulfate sulfurtransferase F11G11.9 (EC|
           2.8.1.1)
          Length = 277

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 60  GGSTTIGISYWLFAYGGYSGDLSPESTLELLKSDGKAVLIDVRPEDLRVKDGI 218
           GG      +YW F Y GY+        +E  K     V  D + E +R KD I
Sbjct: 114 GGMAAASRAYWTFRYYGYTTVSVLNGGIEAFKLAQGVVQSDSKAEGIRCKDAI 166

>TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) (Trehalose|
           6-phosphate phosphatase) (TPP)
          Length = 718

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +3

Query: 147 LLKSDGKAVLIDVRPEDLRVKDGIPDLRRAARSKYASVASPEIKGPTKKLLKGG----NE 314
           LL   G    +D+ P++ R++  +  + +    K  +   P I+   ++  +      N 
Sbjct: 426 LLSISGMEYDVDLEPKEPRIRSSL-SMDQTGHKKVDAKKKPGIRKKNREKEEAVEIILNN 484

Query: 315 IDDALVAVVIRNLKLVKGDSKVIIMDANGTRSKSIAR 425
            +DA  A ++ + K  K  ++ ++MD +GT +  +AR
Sbjct: 485 KEDANAARIVNDFK--KSKARTLVMDYDGTLTNIVAR 519

>MURC_AQUAE (O67373) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 454

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
 Frame = +3

Query: 57  LGGSTTIGISYWLFAYG-GYSG-DLSPESTLELLKSDGKAVLIDVRPEDL---------- 200
           +GG    GI+  L   G   SG D+S     +LLK  G  + I  RPE+L          
Sbjct: 14  IGGIGMSGIAQILLEMGYKVSGSDISENKNTKLLKQKGAKIYIGHRPENLGDAQVVVYSS 73

Query: 201 RVKDGIPDLRRAARSKYASVASPEIKGPTKKLLKG-------GNEIDDALVAVVIRNLKL 359
            VK   P+++ A R     +   E+     KL +G       G     +++A ++ N  L
Sbjct: 74  AVKPDNPEIQEAKRRNIPVIPRGEMLAELFKLKEGIAVSGSHGKTTTTSMIAEILINAGL 133

>RECO_STAES (Q8CP22) DNA repair protein recO (Recombination protein O)|
          Length = 253

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 138 SIQVTSLQNSRHTRRASKISLLLLNLQAKLPIEQLGHLGSNQ 13
           +I  ++L   +H    S  +L LLN+  +LPI ++ HL   Q
Sbjct: 173 AISESALYQDQHAFHLSNRTLYLLNILQQLPISKMNHLNIQQ 214

>RECO_STAEQ (Q5HNY1) DNA repair protein recO (Recombination protein O)|
          Length = 253

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 138 SIQVTSLQNSRHTRRASKISLLLLNLQAKLPIEQLGHLGSNQ 13
           +I  ++L   +H    S  +L LLN+  +LPI ++ HL   Q
Sbjct: 173 AISESALYQDQHAFHLSNRTLYLLNILQQLPISKMNHLNIQQ 214

>TNC6B_HUMAN (Q9UPQ9) Trinucleotide repeat-containing 6B protein|
          Length = 1723

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 15   GLNPSDPIVQLAVLLGGSTTIGISYWLFAYGGYSG 119
            G N SDP+     L GGST  G+  W  + GG SG
Sbjct: 1642 GQNQSDPVGPALNLFGGST--GLGQWSSSAGGSSG 1674

>HLYB_VIBCH (P15492) Hemolysin secretion protein precursor|
          Length = 548

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +3

Query: 144 ELLKSDGKAVLIDVRPEDLRVKDGIPDLRRAARSKYASVASPEIKGPTKKL 296
           E    D K VL   R E+ R +D IP++R+A +    S  +PE+K   +KL
Sbjct: 76  ETALKDAKGVL--KRVEEARTED-IPEMRQAMQVAVDSQVNPELKEQARKL 123

>UBIE_SYNY3 (P72818) Menaquinone biosynthesis methyltransferase ubiE (EC|
           2.1.1.-)
          Length = 238

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
 Frame = +3

Query: 114 SGDLSPESTLELLKSDGKAVLIDVRPEDLRVKDGIPDLRRAARSKYASVASPEIKGPTKK 293
           SGDL+ +   +++ + GK V +D   E L +  G        +SKYA +    ++G    
Sbjct: 63  SGDLAFQGA-KVVGTRGKVVGLDFCAELLAIAAG------KHKSKYAHLPMQWLQGDALA 115

Query: 294 LLKGGNEIDDALVAVVIRNL-----------KLVKGDSKVIIMD 392
           L    NE D A +   +RN+           +++K   KV I+D
Sbjct: 116 LPFSDNEFDGATMGYGLRNVGNIPQALTELQRVLKPGKKVAILD 159

>AROK_PYRFU (Q8U0A5) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 273

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
 Frame = +3

Query: 60  GGSTTIGISYWLFAYGGYSG-DLSPESTLELLKSD--GKAVLIDVRPEDLRVKDGIPD-L 227
           G S    ++ +    GG  G DL  E+ +++   +  GK ++  +   D RV + + D +
Sbjct: 7   GSSAITVVNAFATGKGGAIGIDLWTEAKVKITDGEVKGKILVNGLEFNDFRVVNAVLDVM 66

Query: 228 RRAARSKYASVASPEIKGPTKKLLKGGNEIDDALVAVVIRNLKLVKGDSKVIIMDANGTR 407
           RR +  ++        + P  K LK  + + +ALV  + R L+L     KV+ +     +
Sbjct: 67  RRYSGIEFGIEFEINSEIPVGKGLKSSSAVANALVEAIARALRLNIPGIKVVKLGVEAAK 126

Query: 408 SKSI 419
              +
Sbjct: 127 KAGV 130

>Y114_RICTY (Q68XP2) UPF0176 protein RT0114|
          Length = 247

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 279 GPTKKLLKGGNEIDDALVAVVIRNLKLVKGDSKVIIMDANGTRSKSIARLLKKLGVQQPY 458
           G  K  +    E      A V +N  L++G  K+ +    G R +    LLK +G  + Y
Sbjct: 142 GTFKSAINPRTETFKQFPAWVQQNQALLQG-KKIAMFCTGGIRCEKSTSLLKSIGYNEVY 200

Query: 459 LVKGG 473
            +KGG
Sbjct: 201 HLKGG 205

>GRA6_TOXGO (Q27003) Dense granule protein 6 (Protein GRA 6) (Antigen p32)|
           (Protein p33)
          Length = 230

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
 Frame = +3

Query: 99  AYGGYSGDLSPESTLELLKSDGKAVLIDVRPEDLRVKDGIPDLR----------RAARSK 248
           A GG  GD   E       ++G     DV P  +   +G  + R          +  R +
Sbjct: 77  AMGGGQGDSLAEDDTTSEAAEG-----DVDPFPVLANEGKSEARGPSLEERIEEQGTRRR 131

Query: 249 YASVASPEIKGPTKKLLKGGNEIDDALVAVVIRNL 353
           Y+SV  P+ K P+K+  K    I   ++AV +  L
Sbjct: 132 YSSVQEPQAKVPSKRTQKRHRLIGAVVLAVSVAML 166

>GLPE_ACTPL (Q6T893) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1)|
          Length = 108

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 345 RNLKLVKGDSKVIIMDANGTRSKSIARLLKKLGVQQPYLVKGG 473
           R L  V  +  VI+M  +G  S++ A+ L + G  + Y VKGG
Sbjct: 51  RFLDEVDYEEPVIVMCYHGVSSRNTAQFLVEQGFDRVYSVKGG 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,344,209
Number of Sequences: 219361
Number of extensions: 1312208
Number of successful extensions: 3750
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3750
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)