No.
Definition
Score (bits)
E Value
1 dbj|AK120594.1| Oryza sativa (japonica cultivar-group) cDNA clon...
505
e-140
2 dbj|AK060416.1| Oryza sativa (japonica cultivar-group) cDNA clon...
505
e-140
3 ref|NM_190267.1| Oryza sativa (japonica cultivar-group), predic...
299
4e-78
4 gb|AY105366.1| Zea mays PCO088639 mRNA sequence
147
4e-32
5 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
117
3e-23
6 dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic D...
117
3e-23
7 dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D...
117
3e-23
8 gb|AC144815.3| Mus musculus BAC clone RP24-289M2 from 12, comple...
44
0.41
9 ref|XM_852225.1| PREDICTED: Canis familiaris similar to SLIT-ROB...
42
1.6
10 ref|XM_852190.1| PREDICTED: Canis familiaris similar to SLIT-ROB...
42
1.6
11 ref|XM_852057.1| PREDICTED: Canis familiaris similar to SLIT-ROB...
42
1.6
12 ref|XM_536107.2| PREDICTED: Canis familiaris similar to SLIT-ROB...
42
1.6
13 gb|AC154372.1| Mus musculus BAC clone RP23-113F18 from 16, compl...
42
1.6
14 gb|AC135633.3| Mus musculus BAC clone RP24-84O13 from chromosome...
40
6.4
15 emb|AL390961.17| Human DNA sequence from clone RP13-16H11 on chr...
40
6.4
16 emb|X77395.1|SCN201952 S.cerevisiae N2019, N2021, N2023, N2025, ...
40
6.4
17 gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
40
6.4
18 dbj|AK086513.1| Mus musculus 15 days embryo head cDNA, RIKEN ful...
40
6.4
19 emb|Z17162.1|HS259ZG1 H. sapiens (D13S172) DNA segment containin...
40
6.4
20 emb|Z71623.1|SCYNR008W S.cerevisiae chromosome XIV reading frame...
40
6.4
21 gb|DQ333135.1| Synthetic construct Saccharomyces cerevisiae clon...
40
6.4
22 gb|AC150901.2| Mus musculus BAC clone RP23-62N8 from 19, complet...
40
6.4
23 emb|AL844898.5| Mouse DNA sequence from clone RP23-346M17 on chr...
40
6.4
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 117 bits (59), Expect = 3e-23
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 85 cttactggctcttcgcgtatggcggctattctggagacttgtcacctgaatcgacattgg 144
|||||||||||||||| || || |||||||| |||||||||||||| ||||| ||| | |
Sbjct: 38958023 cttactggctcttcgcatacggtggctattccggagacttgtcacccgaatccacactag 38957964
Query: 145 agctattgaaaagtgatggcaaagccgtacttattgatgttcggcctgagg 195
|||| |||| || ||||| ||||||||||||||||||||||||| ||||||
Sbjct: 38957963 agctgttgagaaatgatgacaaagccgtacttattgatgttcggtctgagg 38957913
Score = 115 bits (58), Expect = 1e-22
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 364 agggtgattcaaaggtcatcattatggatgctaatggaaccagatcaaagtccattgcta 423
|||||||||||||||| || ||||||||||||||||| | | |||||||| |||||||||
Sbjct: 38957024 agggtgattcaaaggttataattatggatgctaatgggagccgatcaaaggccattgcta 38956965
Query: 424 ggctactgaagaagcttggtgtgcag 449
|| |||||||||||||||||||||||
Sbjct: 38956964 ggttactgaagaagcttggtgtgcag 38956939
Score = 107 bits (54), Expect = 3e-20
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 3 gaaaagaatgttggtttgaacccaagtgacccaattgttcaattggcagttttgcttgga 62
|||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||
Sbjct: 38958184 gaaaagaatgttggtttggacccaagtgatcctattgttcaattggcagttctgcttgga 38958125
Query: 63 ggttcaacaacaat 76
|||||||| |||||
Sbjct: 38958124 ggttcaaccacaat 38958111
Score = 103 bits (52), Expect = 5e-19
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 193 aggacttgagggtgaaagatggaattcctgacctacgccgtgcagctagatctaaatatg 252
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 38957584 aggacttgagagtgaaagatggaattccggatctacgccgtgcagctagatctaaatatg 38957525
Query: 253 caagcgttgcttcgcctgag 272
||| | |||||| ||||||
Sbjct: 38957524 caactgctgcttcacctgag 38957505
Score = 67.9 bits (34), Expect = 3e-08
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 287 aaagaagctacttaaaggtggaaacgaaattgatgatgctttggttgcagttgtaatccg 346
||||| |||||||||| |||||| || |||||||||| ||| | |||||| | |||||
Sbjct: 38957190 aaagaggctacttaaaagtggaagagatgttgatgatgcgttgctcgcagttatcatccg 38957131
Query: 347 caacttgaagttggtcaa 364
||||||||||||||||||
Sbjct: 38957130 caacttgaagttggtcaa 38957113
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 446 gcagcaaccttacctggttaaaggtggt 473
||||| ||||||||| ||||||||||||
Sbjct: 38956859 gcagcgaccttaccttgttaaaggtggt 38956832
>dbj|AP003349.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0674H09
Length = 142955
Score = 117 bits (59), Expect = 3e-23
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 85 cttactggctcttcgcgtatggcggctattctggagacttgtcacctgaatcgacattgg 144
|||||||||||||||| || || |||||||| |||||||||||||| ||||| ||| | |
Sbjct: 31656 cttactggctcttcgcatacggtggctattccggagacttgtcacccgaatccacactag 31597
Query: 145 agctattgaaaagtgatggcaaagccgtacttattgatgttcggcctgagg 195
|||| |||| || ||||| ||||||||||||||||||||||||| ||||||
Sbjct: 31596 agctgttgagaaatgatgacaaagccgtacttattgatgttcggtctgagg 31546
Score = 115 bits (58), Expect = 1e-22
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 364 agggtgattcaaaggtcatcattatggatgctaatggaaccagatcaaagtccattgcta 423
|||||||||||||||| || ||||||||||||||||| | | |||||||| |||||||||
Sbjct: 30657 agggtgattcaaaggttataattatggatgctaatgggagccgatcaaaggccattgcta 30598
Query: 424 ggctactgaagaagcttggtgtgcag 449
|| |||||||||||||||||||||||
Sbjct: 30597 ggttactgaagaagcttggtgtgcag 30572
Score = 107 bits (54), Expect = 3e-20
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 3 gaaaagaatgttggtttgaacccaagtgacccaattgttcaattggcagttttgcttgga 62
|||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||
Sbjct: 31817 gaaaagaatgttggtttggacccaagtgatcctattgttcaattggcagttctgcttgga 31758
Query: 63 ggttcaacaacaat 76
|||||||| |||||
Sbjct: 31757 ggttcaaccacaat 31744
Score = 103 bits (52), Expect = 5e-19
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 193 aggacttgagggtgaaagatggaattcctgacctacgccgtgcagctagatctaaatatg 252
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 31217 aggacttgagagtgaaagatggaattccggatctacgccgtgcagctagatctaaatatg 31158
Query: 253 caagcgttgcttcgcctgag 272
||| | |||||| ||||||
Sbjct: 31157 caactgctgcttcacctgag 31138
Score = 67.9 bits (34), Expect = 3e-08
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 287 aaagaagctacttaaaggtggaaacgaaattgatgatgctttggttgcagttgtaatccg 346
||||| |||||||||| |||||| || |||||||||| ||| | |||||| | |||||
Sbjct: 30823 aaagaggctacttaaaagtggaagagatgttgatgatgcgttgctcgcagttatcatccg 30764
Query: 347 caacttgaagttggtcaa 364
||||||||||||||||||
Sbjct: 30763 caacttgaagttggtcaa 30746
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 446 gcagcaaccttacctggttaaaggtggt 473
||||| ||||||||| ||||||||||||
Sbjct: 30492 gcagcgaccttaccttgttaaaggtggt 30465
>dbj|AP003316.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0696G06
Length = 142571
Score = 117 bits (59), Expect = 3e-23
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 85 cttactggctcttcgcgtatggcggctattctggagacttgtcacctgaatcgacattgg 144
|||||||||||||||| || || |||||||| |||||||||||||| ||||| ||| | |
Sbjct: 122809 cttactggctcttcgcatacggtggctattccggagacttgtcacccgaatccacactag 122750
Query: 145 agctattgaaaagtgatggcaaagccgtacttattgatgttcggcctgagg 195
|||| |||| || ||||| ||||||||||||||||||||||||| ||||||
Sbjct: 122749 agctgttgagaaatgatgacaaagccgtacttattgatgttcggtctgagg 122699
Score = 115 bits (58), Expect = 1e-22
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 364 agggtgattcaaaggtcatcattatggatgctaatggaaccagatcaaagtccattgcta 423
|||||||||||||||| || ||||||||||||||||| | | |||||||| |||||||||
Sbjct: 121810 agggtgattcaaaggttataattatggatgctaatgggagccgatcaaaggccattgcta 121751
Query: 424 ggctactgaagaagcttggtgtgcag 449
|| |||||||||||||||||||||||
Sbjct: 121750 ggttactgaagaagcttggtgtgcag 121725
Score = 107 bits (54), Expect = 3e-20
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 3 gaaaagaatgttggtttgaacccaagtgacccaattgttcaattggcagttttgcttgga 62
|||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||
Sbjct: 122970 gaaaagaatgttggtttggacccaagtgatcctattgttcaattggcagttctgcttgga 122911
Query: 63 ggttcaacaacaat 76
|||||||| |||||
Sbjct: 122910 ggttcaaccacaat 122897
Score = 103 bits (52), Expect = 5e-19
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 193 aggacttgagggtgaaagatggaattcctgacctacgccgtgcagctagatctaaatatg 252
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 122370 aggacttgagagtgaaagatggaattccggatctacgccgtgcagctagatctaaatatg 122311
Query: 253 caagcgttgcttcgcctgag 272
||| | |||||| ||||||
Sbjct: 122310 caactgctgcttcacctgag 122291
Score = 67.9 bits (34), Expect = 3e-08
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 287 aaagaagctacttaaaggtggaaacgaaattgatgatgctttggttgcagttgtaatccg 346
||||| |||||||||| |||||| || |||||||||| ||| | |||||| | |||||
Sbjct: 121976 aaagaggctacttaaaagtggaagagatgttgatgatgcgttgctcgcagttatcatccg 121917
Query: 347 caacttgaagttggtcaa 364
||||||||||||||||||
Sbjct: 121916 caacttgaagttggtcaa 121899
Score = 40.1 bits (20), Expect = 6.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 446 gcagcaaccttacctggttaaaggtggt 473
||||| ||||||||| ||||||||||||
Sbjct: 121645 gcagcgaccttaccttgttaaaggtggt 121618
>emb|X77395.1 |SCN201952 S.cerevisiae N2019, N2021, N2023, N2025, N2027, N2031, N2048 and N2050
genes
Length = 23901
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 238 ctagatctaaatatgcaagc 257
||||||||||||||||||||
Sbjct: 12634 ctagatctaaatatgcaagc 12615
>emb|AL844898.5 | Mouse DNA sequence from clone RP23-346M17 on chromosome 2, complete
sequence
Length = 164288
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 gaggacttgagggtgaaaga 211
||||||||||||||||||||
Sbjct: 34369 gaggacttgagggtgaaaga 34388
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,867,834
Number of Sequences: 3902068
Number of extensions: 3867834
Number of successful extensions: 65871
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65791
Number of HSP's gapped (non-prelim): 80
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)