>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)|
          Length = 1428

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 312 GATTRSSVTARRCGRRH-----TSRWYSSPAWFRVPCFTVLNRSLSMAPPPPP 169
           G+TT ++  A R GR+H     T  W   P          L R LS A PPPP
Sbjct: 16  GSTTTTAAPAGRKGRQHRPCTATGAWRPGPR-----ARLCLPRVLSRALPPPP 63

>TS1R1_MOUSE (Q99PG6) Taste receptor type 1 member 1 precursor (G-protein|
           coupled receptor 70)
          Length = 842

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 65  GSNKLCRECHGSARWS 18
           G+N+LCRECH    W+
Sbjct: 360 GTNQLCRECHAFTTWN 375

>GP124_MOUSE (Q91ZV8) Probable G-protein coupled receptor 124 precursor (Tumor|
           endothelial marker 5)
          Length = 1329

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -3

Query: 246 SSPAWFRVPCFTVLNRSLSMAPPP-------PPQGRSLARTYLVNGTVPL 118
           SS  W  V    VL++ LS   PP       PP  R + R YL+ G +PL
Sbjct: 839 SSLLWMGVKA-RVLHKELSWRAPPLEEGEAAPPGPRPMLRFYLIAGGIPL 887

>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 183 PPPPPQGRSLARTYLVNGTVPLATTVLHTA 94
           PPPPP GR LA +    G  P +T    TA
Sbjct: 443 PPPPPYGRLLANSNAHPGPFPPSTGAQSTA 472

>PAX8_HUMAN (Q06710) Paired box protein Pax-8|
          Length = 450

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 198 SLSMAPPPPPQGRSLARTYLVNGTVPLA 115
           S ++ PP  PQ  SL  TY +NG + +A
Sbjct: 162 SSAVTPPESPQSDSLGSTYSINGLLGIA 189

>PAX8_MOUSE (Q00288) Paired box protein Pax-8|
          Length = 457

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 198 SLSMAPPPPPQGRSLARTYLVNGTVPLA 115
           S ++ PP  PQ  SL  TY +NG + +A
Sbjct: 162 SSAVTPPESPQSDSLGSTYSINGLLGIA 189

>PAX8_CANFA (P47240) Paired box protein Pax-8|
          Length = 459

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 198 SLSMAPPPPPQGRSLARTYLVNGTVPLA 115
           S ++ PP  PQ  SL  TY +NG + +A
Sbjct: 162 SSAVTPPESPQSDSLGSTYSINGLLGIA 189

>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 183 PPPPPQGRSLARTYLVNGTVPLATTVLHTA 94
           PPPPP GR LA +    G  P +T    TA
Sbjct: 442 PPPPPYGRLLANSNAHPGPFPPSTGAQSTA 471

>VL2_HPV38 (Q80912) Minor capsid protein L2|
          Length = 527

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 204 NRSLSMAPPPPPQGRSLARTYLVNGTVPLATTVLHTAGSCELASQL 67
           N  L +A P PP   +++RT   N    + + V+ T+G   LA  +
Sbjct: 161 NAILEVADPHPPTRATVSRTQYNNPAFQIISEVIPTSGESSLADHV 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,081,717
Number of Sequences: 219361
Number of extensions: 869845
Number of successful extensions: 3643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3612
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)