ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet116f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 278 accgggatgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtcc 337 ||||| || ||||||||| |||||||||||||| ||||||| || ||||||||||||||| Sbjct: 2193842 accggcatacggttcttcatcacctgcgacccgtccaacgtgcgccacatcttcacgtcc 2193901 Query: 338 aaccacgcaaacttccccaaggg 360 ||| |||||||| ||||||||| Sbjct: 2193902 aacttcgcaaactaccccaaggg 2193924 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 284 atgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccac 343 |||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||| | Sbjct: 2152222 atgcggttcttcttcacctgcgactcggccaatgtccggcacatcttcacctccaacttc 2152281 Query: 344 gcaaacttccccaaggg 360 ||||| | ||||||||| Sbjct: 2152282 gcaaattaccccaaggg 2152298 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||||||||||||||||| |||||| || |||||||||||||||||| || Sbjct: 2205417 cggttcttcgtcacctgcgacccggacaacgtgcgccacatcttcacgtccaacttcgac 2205476 Query: 347 aacttccccaagggcg 362 |||| ||||||||||| Sbjct: 2205477 aactaccccaagggcg 2205492 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 284 atgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaac 340 |||||| ||||| ||||||||||||| ||||| ||||||||| ||||||| |||||| Sbjct: 2160699 atgcggctcttcatcacctgcgacccagccaatgtccggcacgtcttcacctccaac 2160755 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||| || |||||||||| |||||| || |||||||||| |||| ||| Sbjct: 2097264 cggttcttcgtgacgtgcgacccggacaacgtgcgccacatcttcatcaacaacttcgcc 2097323 Query: 347 aacttccccaagggcgcggagttcgccgccatctttgacatcgcgggtggcagcttcttc 406 |||| ||||||||||| |||||||||| || |||| ||| || ||| | |||||||||| Sbjct: 2097324 aactaccccaagggcgaggagttcgcctccttcttcgacgtcatgggcgacagcttcttc 2097383 Query: 407 a 407 | Sbjct: 2097384 a 2097384 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 177 tgctcccttcccttgtcgccaacctccacaac 208 ||||||||||||| || |||||| |||||||| Sbjct: 2097154 tgctcccttccctcgttgccaacatccacaac 2097185
>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11, complete sequence Length = 156647 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 278 accgggatgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtcc 337 ||||| || ||||||||| |||||||||||||| ||||||| || ||||||||||||||| Sbjct: 84136 accggcatacggttcttcatcacctgcgacccgtccaacgtgcgccacatcttcacgtcc 84195 Query: 338 aaccacgcaaacttccccaaggg 360 ||| |||||||| ||||||||| Sbjct: 84196 aacttcgcaaactaccccaaggg 84218 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 284 atgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccac 343 |||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||| | Sbjct: 42516 atgcggttcttcttcacctgcgactcggccaatgtccggcacatcttcacctccaacttc 42575 Query: 344 gcaaacttccccaaggg 360 ||||| | ||||||||| Sbjct: 42576 gcaaattaccccaaggg 42592 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||||||||||||||||| |||||| || |||||||||||||||||| || Sbjct: 95711 cggttcttcgtcacctgcgacccggacaacgtgcgccacatcttcacgtccaacttcgac 95770 Query: 347 aacttccccaagggcg 362 |||| ||||||||||| Sbjct: 95771 aactaccccaagggcg 95786 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 284 atgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaac 340 |||||| ||||| ||||||||||||| ||||| ||||||||| ||||||| |||||| Sbjct: 50993 atgcggctcttcatcacctgcgacccagccaatgtccggcacgtcttcacctccaac 51049
>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081A17, from chromosome 3, complete sequence Length = 134821 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 278 accgggatgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtcc 337 ||||| || ||||||||| |||||||||||||| ||||||| || ||||||||||||||| Sbjct: 132214 accggcatacggttcttcatcacctgcgacccgtccaacgtgcgccacatcttcacgtcc 132155 Query: 338 aaccacgcaaacttccccaaggg 360 ||| |||||||| ||||||||| Sbjct: 132154 aacttcgcaaactaccccaaggg 132132 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||||||||||||||||| |||||| || |||||||||||||||||| || Sbjct: 120639 cggttcttcgtcacctgcgacccggacaacgtgcgccacatcttcacgtccaacttcgac 120580 Query: 347 aacttccccaagggcg 362 |||| ||||||||||| Sbjct: 120579 aactaccccaagggcg 120564
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 278 accgggatgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtcc 337 ||||| || ||||||||| |||||||||||||| ||||||| || ||||||||||||||| Sbjct: 2193854 accggcatacggttcttcatcacctgcgacccgtccaacgtgcgccacatcttcacgtcc 2193913 Query: 338 aaccacgcaaacttccccaaggg 360 ||| |||||||| ||||||||| Sbjct: 2193914 aacttcgcaaactaccccaaggg 2193936 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 284 atgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccac 343 |||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||| | Sbjct: 2152234 atgcggttcttcttcacctgcgactcggccaatgtccggcacatcttcacctccaacttc 2152293 Query: 344 gcaaacttccccaaggg 360 ||||| | ||||||||| Sbjct: 2152294 gcaaattaccccaaggg 2152310 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||||||||||||||||| |||||| || |||||||||||||||||| || Sbjct: 2205429 cggttcttcgtcacctgcgacccggacaacgtgcgccacatcttcacgtccaacttcgac 2205488 Query: 347 aacttccccaagggcg 362 |||| ||||||||||| Sbjct: 2205489 aactaccccaagggcg 2205504 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 284 atgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaac 340 |||||| ||||| ||||||||||||| ||||| ||||||||| ||||||| |||||| Sbjct: 2160711 atgcggctcttcatcacctgcgacccagccaatgtccggcacgtcttcacctccaac 2160767 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||| || |||||||||| |||||| || |||||||||| |||| ||| Sbjct: 2097276 cggttcttcgtgacgtgcgacccggacaacgtgcgccacatcttcatcaacaacttcgcc 2097335 Query: 347 aacttccccaagggcgcggagttcgccgccatctttgacatcgcgggtggcagcttcttc 406 |||| ||||||||||| |||||||||| || |||| ||| || ||| | |||||||||| Sbjct: 2097336 aactaccccaagggcgaggagttcgcctccttcttcgacgtcatgggcgacagcttcttc 2097395 Query: 407 a 407 | Sbjct: 2097396 a 2097396 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 177 tgctcccttcccttgtcgccaacctccacaac 208 ||||||||||||| || |||||| |||||||| Sbjct: 2097166 tgctcccttccctcgttgccaacatccacaac 2097197
>dbj|AK107532.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G12, full insert sequence Length = 1935 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||||||||||||||||| |||||| || |||||||||||||||||| || Sbjct: 1398 cggttcttcgtcacctgcgacccggacaacgtgcgccacatcttcacgtccaacttcgac 1339 Query: 347 aacttccccaagggcg 362 |||| ||||||||||| Sbjct: 1338 aactaccccaagggcg 1323
>ref|XM_481110.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1503 Score = 85.7 bits (43), Expect = 1e-13 Identities = 163/203 (80%) Strand = Plus / Plus Query: 159 actggccaatagtgggcgtgctcccttcccttgtcgccaacctccacaacttgcacgact 218 ||||||| ||||| || |||||||| |||| ||||||||||| ||| ||||||||||| Sbjct: 116 actggccgatagtaggattgctccctaccctcgtcgccaacctgcaccgcttgcacgact 175 Query: 219 acctcgccgtcgtcctcgccggatcagggcacaacttcagggcaaccggcccgccgggga 278 ||||| ||| ||||||||||| || || || | ||||| ||| ||||||| ||| || Sbjct: 176 acctcaccgacgtcctcgccgcctccggccatagcttcacggcgcacggcccggcggcga 235 Query: 279 ccgggatgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtcca 338 || |||||| | |||||||| || || || | ||| ||||||||||||||||| ||| Sbjct: 236 ccaacatgcggctgttcgtcacatgtgagcctgacaatgtccggcacatcttcaccacca 295 Query: 339 accacgcaaacttccccaagggc 361 |||| | |||| |||||||||| Sbjct: 296 accatgataactaccccaagggc 318
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 85.7 bits (43), Expect = 1e-13 Identities = 163/203 (80%) Strand = Plus / Minus Query: 159 actggccaatagtgggcgtgctcccttcccttgtcgccaacctccacaacttgcacgact 218 ||||||| ||||| || |||||||| |||| ||||||||||| ||| ||||||||||| Sbjct: 9954017 actggccgatagtaggattgctccctaccctcgtcgccaacctgcaccgcttgcacgact 9953958 Query: 219 acctcgccgtcgtcctcgccggatcagggcacaacttcagggcaaccggcccgccgggga 278 ||||| ||| ||||||||||| || || || | ||||| ||| ||||||| ||| || Sbjct: 9953957 acctcaccgacgtcctcgccgcctccggccatagcttcacggcgcacggcccggcggcga 9953898 Query: 279 ccgggatgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtcca 338 || |||||| | |||||||| || || || | ||| ||||||||||||||||| ||| Sbjct: 9953897 ccaacatgcggctgttcgtcacatgtgagcctgacaatgtccggcacatcttcaccacca 9953838 Query: 339 accacgcaaacttccccaagggc 361 |||| | |||| |||||||||| Sbjct: 9953837 accatgataactaccccaagggc 9953815 Score = 60.0 bits (30), Expect = 7e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||| |||| || ||||| | || ||||||||||||||||| |||||||| | Sbjct: 10045386 cggttcttcatcacatgtgaccctgaaaatgtccggcacatcttcacctccaaccatggc 10045445 Query: 347 aacttccccaagggcgcggagttcgccgccatctttgacatc 388 |||| |||||||||| |||||||||| ||||| |||||| Sbjct: 10045446 aactaccccaagggccacgagttcgccgagatcttcgacatc 10045487 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 293 ttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgcaaacttc 352 |||||||| || ||||| | ||| ||||||||||||||||| ||||||| | |||| | Sbjct: 9915474 ttcgtcacatgtgaccctgacaatgtccggcacatcttcaccaccaaccatgacaactac 9915533 Query: 353 cccaagggcgcggagttcgccgccatctttgacatc 388 ||||||||| |||||||||| ||||| |||||| Sbjct: 9915534 cccaagggccacgagttcgccgagatcttcgacatc 9915569 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 193 cgccaacctccacaacttgcacgactacctcgccgtcgtcctcgccg 239 ||||||||| |||||| | |||||| ||||||||| ||||||||||| Sbjct: 10045289 cgccaacctacacaacctccacgaccacctcgccggcgtcctcgccg 10045335
>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03 Length = 166423 Score = 85.7 bits (43), Expect = 1e-13 Identities = 163/203 (80%) Strand = Plus / Minus Query: 159 actggccaatagtgggcgtgctcccttcccttgtcgccaacctccacaacttgcacgact 218 ||||||| ||||| || |||||||| |||| ||||||||||| ||| ||||||||||| Sbjct: 101264 actggccgatagtaggattgctccctaccctcgtcgccaacctgcaccgcttgcacgact 101205 Query: 219 acctcgccgtcgtcctcgccggatcagggcacaacttcagggcaaccggcccgccgggga 278 ||||| ||| ||||||||||| || || || | ||||| ||| ||||||| ||| || Sbjct: 101204 acctcaccgacgtcctcgccgcctccggccatagcttcacggcgcacggcccggcggcga 101145 Query: 279 ccgggatgcggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtcca 338 || |||||| | |||||||| || || || | ||| ||||||||||||||||| ||| Sbjct: 101144 ccaacatgcggctgttcgtcacatgtgagcctgacaatgtccggcacatcttcaccacca 101085 Query: 339 accacgcaaacttccccaagggc 361 |||| | |||| |||||||||| Sbjct: 101084 accatgataactaccccaagggc 101062 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 293 ttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgcaaacttc 352 |||||||| || ||||| | ||| ||||||||||||||||| ||||||| | |||| | Sbjct: 62721 ttcgtcacatgtgaccctgacaatgtccggcacatcttcaccaccaaccatgacaactac 62780 Query: 353 cccaagggcgcggagttcgccgccatctttgacatc 388 ||||||||| |||||||||| ||||| |||||| Sbjct: 62781 cccaagggccacgagttcgccgagatcttcgacatc 62816
>gb|AY109756.1| Zea mays CL309_1 mRNA sequence Length = 1914 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 266 ggcccgccggggaccgggatgcggttcttcgtcacctgcgacccggccaacgtccggcac 325 ||||||||| | |||| |||| ||||||||||||| |||||| ||||||||||| ||| Sbjct: 294 ggcccgccgcgctccggcatgcagttcttcgtcaccgccgaccccgccaacgtccgccac 353 Query: 326 atcttcacgtccaaccacgcaaacttccccaagggcgcggagttcg 371 ||||||| |||||| ||| |||| |||||||||| | ||||||| Sbjct: 354 gtcttcacctccaacttcgccaactaccccaagggccccgagttcg 399
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||| || |||||||||| |||||| || |||||||||| |||| ||| Sbjct: 134687 cggttcttcgtgacgtgcgacccggacaacgtgcgccacatcttcatcaacaacttcgcc 134746 Query: 347 aacttccccaagggcgcggagttcgccgccatctttgacatcgcgggtggcagcttcttc 406 |||| ||||||||||| |||||||||| || |||| ||| || ||| | |||||||||| Sbjct: 134747 aactaccccaagggcgaggagttcgcctccttcttcgacgtcatgggcgacagcttcttc 134806 Query: 407 a 407 | Sbjct: 134807 a 134807 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 177 tgctcccttcccttgtcgccaacctccacaac 208 ||||||||||||| || |||||| |||||||| Sbjct: 134577 tgctcccttccctcgttgccaacatccacaac 134608
>dbj|AK105857.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H07, full insert sequence Length = 1723 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||||| || |||||||||| |||||| || |||||||||| |||| ||| Sbjct: 316 cggttcttcgtgacgtgcgacccggacaacgtgcgccacatcttcatcaacaacttcgcc 375 Query: 347 aacttccccaagggcgcggagttcgccgccatctttgacatcgcgggtggcagcttcttc 406 |||| ||||||||||| |||||||||| || |||| ||| || ||| | |||||||||| Sbjct: 376 aactaccccaagggcgaggagttcgcctccttcttcgacgtcatgggcgacagcttcttc 435 Query: 407 a 407 | Sbjct: 436 a 436 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 177 tgctcccttcccttgtcgccaacctccacaac 208 ||||||||||||| || |||||| |||||||| Sbjct: 206 tgctcccttccctcgttgccaacatccacaac 237
>dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1127C04 Length = 121441 Score = 60.0 bits (30), Expect = 7e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||| |||| || ||||| | || ||||||||||||||||| |||||||| | Sbjct: 85288 cggttcttcatcacatgtgaccctgaaaatgtccggcacatcttcacctccaaccatggc 85347 Query: 347 aacttccccaagggcgcggagttcgccgccatctttgacatc 388 |||| |||||||||| |||||||||| ||||| |||||| Sbjct: 85348 aactaccccaagggccacgagttcgccgagatcttcgacatc 85389 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 193 cgccaacctccacaacttgcacgactacctcgccgtcgtcctcgccg 239 ||||||||| |||||| | |||||| ||||||||| ||||||||||| Sbjct: 85191 cgccaacctacacaacctccacgaccacctcgccggcgtcctcgccg 85237
>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0023I13 Length = 165911 Score = 60.0 bits (30), Expect = 7e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 287 cggttcttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgca 346 ||||||||| |||| || ||||| | || ||||||||||||||||| |||||||| | Sbjct: 4732 cggttcttcatcacatgtgaccctgaaaatgtccggcacatcttcacctccaaccatggc 4791 Query: 347 aacttccccaagggcgcggagttcgccgccatctttgacatc 388 |||| |||||||||| |||||||||| ||||| |||||| Sbjct: 4792 aactaccccaagggccacgagttcgccgagatcttcgacatc 4833 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 193 cgccaacctccacaacttgcacgactacctcgccgtcgtcctcgccg 239 ||||||||| |||||| | |||||| ||||||||| ||||||||||| Sbjct: 4635 cgccaacctacacaacctccacgaccacctcgccggcgtcctcgccg 4681
>ref|XM_481105.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1694 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 293 ttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgcaaacttc 352 |||||||| || ||||| | ||| ||||||||||||||||| ||||||| | |||| | Sbjct: 293 ttcgtcacatgtgaccctgacaatgtccggcacatcttcaccaccaaccatgacaactac 352 Query: 353 cccaagggcgcggagttcgccgccatctttgacatc 388 ||||||||| |||||||||| ||||| |||||| Sbjct: 353 cccaagggccacgagttcgccgagatcttcgacatc 388
>ref|XM_507182.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0005C03.18 mRNA Length = 1697 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 293 ttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgcaaacttc 352 |||||||| || ||||| | ||| ||||||||||||||||| ||||||| | |||| | Sbjct: 296 ttcgtcacatgtgaccctgacaatgtccggcacatcttcaccaccaaccatgacaactac 355 Query: 353 cccaagggcgcggagttcgccgccatctttgacatc 388 ||||||||| |||||||||| ||||| |||||| Sbjct: 356 cccaagggccacgagttcgccgagatcttcgacatc 391
>dbj|AK104291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F05, full insert sequence Length = 1694 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 293 ttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgcaaacttc 352 |||||||| || ||||| | ||| ||||||||||||||||| ||||||| | |||| | Sbjct: 293 ttcgtcacatgtgaccctgacaatgtccggcacatcttcaccaccaaccatgacaactac 352 Query: 353 cccaagggcgcggagttcgccgccatctttgacatc 388 ||||||||| |||||||||| ||||| |||||| Sbjct: 353 cccaagggccacgagttcgccgagatcttcgacatc 388
>dbj|AK060990.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C11, full insert sequence Length = 1697 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 293 ttcgtcacctgcgacccggccaacgtccggcacatcttcacgtccaaccacgcaaacttc 352 |||||||| || ||||| | ||| ||||||||||||||||| ||||||| | |||| | Sbjct: 296 ttcgtcacatgtgaccctgacaatgtccggcacatcttcaccaccaaccatgacaactac 355 Query: 353 cccaagggcgcggagttcgccgccatctttgacatc 388 ||||||||| |||||||||| ||||| |||||| Sbjct: 356 cccaagggccacgagttcgccgagatcttcgacatc 391
>gb|AC122259.2| Mus musculus BAC clone RP23-183E7 from 17, complete sequence Length = 209695 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 ccactgaaggagagccctggc 428 ||||||||||||||||||||| Sbjct: 138478 ccactgaaggagagccctggc 138498
>gb|AC129094.31| Mus musculus strain C57BL/6J clone rp23-306b23 map 17, complete sequence Length = 188078 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 ccactgaaggagagccctggc 428 ||||||||||||||||||||| Sbjct: 157818 ccactgaaggagagccctggc 157838
>gb|AC109610.25| Mus musculus strain C57BL/6J clone rp23-305g19 map 17, complete sequence Length = 194366 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ccactgaaggagagccctggc 428 ||||||||||||||||||||| Sbjct: 101388 ccactgaaggagagccctggc 101368
>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence Length = 167777 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 gtgctcccttcccttgtcgccaacc 200 |||||||||||||||||| |||||| Sbjct: 156910 gtgctcccttcccttgtccccaacc 156934
>ref|NM_189587.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1788 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 aacttccccaagggcgcggagttcgccgccat 378 |||| ||||||||| | ||||||||||||||| Sbjct: 373 aactaccccaagggggaggagttcgccgccat 404
>gb|AC007581.6| Drosophila melanogaster clone BACR03I24, complete sequence Length = 163517 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cagcttcttcaccactgaag 416 |||||||||||||||||||| Sbjct: 38201 cagcttcttcaccactgaag 38220
>gb|AY257538.1| Pseudomonas aeruginosa strain C plasmid pKLC102, complete sequence Length = 103532 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 acctcgccgtcgtcctcgcc 238 |||||||||||||||||||| Sbjct: 87529 acctcgccgtcgtcctcgcc 87548
>gb|AY644517.2| Bos taurus T cell receptor gamma (TCRG) gene, partial sequence Length = 243699 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ggcagcttcttcaccactga 414 |||||||||||||||||||| Sbjct: 51217 ggcagcttcttcaccactga 51236
>emb|CR627245.1| Homo sapiens genomic DNA; cDNA DKFZp686O04276 (from clone DKFZp686O04276) Length = 3605 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgggtggcagcttcttcacc 409 |||||||||||||||||||| Sbjct: 1151 cgggtggcagcttcttcacc 1132
>ref|NM_138102.1| Drosophila melanogaster CG13588-RA (CG13588), mRNA Length = 1293 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cagcttcttcaccactgaag 416 |||||||||||||||||||| Sbjct: 720 cagcttcttcaccactgaag 739
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 aacttccccaagggcgcggagttcgccgccat 378 |||| ||||||||| | ||||||||||||||| Sbjct: 4420690 aactaccccaagggggaggagttcgccgccat 4420721
>gb|AC007574.6|AC007574 Drosophila melanogaster, chromosome 2R, region 60D-60D, BAC clone BACR11C07, complete sequence Length = 171151 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cagcttcttcaccactgaag 416 |||||||||||||||||||| Sbjct: 145250 cagcttcttcaccactgaag 145269
>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0489A01 Length = 137174 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 aacttccccaagggcgcggagttcgccgccat 378 |||| ||||||||| | ||||||||||||||| Sbjct: 80772 aactaccccaagggggaggagttcgccgccat 80803
>gb|AC137492.2| Homo sapiens chromosome 16 clone LA16c-379F6, complete sequence Length = 36887 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgggtggcagcttcttcacc 409 |||||||||||||||||||| Sbjct: 21387 cgggtggcagcttcttcacc 21368
>gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, complete sequence Length = 162359 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agggcccagcagtgctcccc 154 |||||||||||||||||||| Sbjct: 10123 agggcccagcagtgctcccc 10142
>gb|AC026950.15| Homo sapiens chromosome 8, clone RP11-555E9, complete sequence Length = 165051 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 agggcccagcagtgctcccc 154 |||||||||||||||||||| Sbjct: 5384 agggcccagcagtgctcccc 5365
>gb|AC092127.3| Homo sapiens chromosome 16 clone RP11-118F19, complete sequence Length = 62827 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgggtggcagcttcttcacc 409 |||||||||||||||||||| Sbjct: 58998 cgggtggcagcttcttcacc 58979
>dbj|AK110852.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C07, full insert sequence Length = 1788 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 aacttccccaagggcgcggagttcgccgccat 378 |||| ||||||||| | ||||||||||||||| Sbjct: 373 aactaccccaagggggaggagttcgccgccat 404
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 cggcccgccggggaccggga 284 |||||||||||||||||||| Sbjct: 323594 cggcccgccggggaccggga 323575
>gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71 of 73 of the complete sequence Length = 310958 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cagcttcttcaccactgaag 416 |||||||||||||||||||| Sbjct: 233303 cagcttcttcaccactgaag 233322
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 gggcgcggagttcgccgccatctt 381 |||||| ||||||||||||||||| Sbjct: 4621196 gggcgccgagttcgccgccatctt 4621219
>emb|AL606745.11| Mouse DNA sequence from clone RP23-32L6 on chromosome 3, complete sequence Length = 192332 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 actactcacaacaatgtcta 44 |||||||||||||||||||| Sbjct: 89421 actactcacaacaatgtcta 89440 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,025,497 Number of Sequences: 3902068 Number of extensions: 3025497 Number of successful extensions: 59963 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59637 Number of HSP's gapped (non-prelim): 322 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
