>gb|AY105140.1| Zea mays PCO135758 mRNA sequence
          Length = 959

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcagcgggtctttgctgtccaagtgtttgagctgcatcgactgatcaaagtgcagaaa 60
           |||||| |||| ||||||||||||||||| |||||||||   ||||| ||||||||||||
Sbjct: 33  cagcagagggtttttgctgtccaagtgttcgagctgcataagctgataaaagtgcagaaa 92

                                                    
Query: 61  ttgattgcagcatccccacacctacttattgaaggagatcc 101
           || || || ||||| ||||| || ||||||||||| |||||
Sbjct: 93  ttaatcgcggcatctccacatctgcttattgaaggtgatcc 133

>gb|BT017629.1| Zea mays clone EL01N0437B02.c mRNA sequence
          Length = 1468

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcagcgggtctttgctgtccaagtgtttgagctgcatcgactgatcaaagtgcagaaa 60
           |||||| |||| |||||||| ||||| || ||||||||| |  |||||||||||||||| 
Sbjct: 497 cagcagagggtatttgctgttcaagtattcgagctgcataggttgatcaaagtgcagaag 556

                                                               
Query: 61  ttgattgcagcatccccacacctacttattgaaggagatccatgccttggca 112
           ||||| || ||||| |||||  |||||||||| || ||||| ||||||||||
Sbjct: 557 ttgatcgctgcatctccacatgtacttattgagggggatccttgccttggca 608

>ref|XM_493738.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2283

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 93/110 (84%)
 Strand = Plus / Plus

                                                                        
Query: 8    gggtctttgctgtccaagtgtttgagctgcatcgactgatcaaagtgcagaaattgattg 67
            |||| ||||||||||| || ||||||||||||    || | ||||||||||| |||||||
Sbjct: 1256 gggtgtttgctgtccaggtttttgagctgcataagttggtaaaagtgcagaagttgattg 1315

                                                              
Query: 68   cagcatccccacacctacttattgaaggagatccatgccttggcagtgcc 117
            ||||||| |||||  ||||||||||| | ||||| |||||||||| ||||
Sbjct: 1316 cagcatcgccacatgtacttattgaaagtgatccttgccttggcaatgcc 1365

>ref|NM_193566.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2298

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                        
Query: 52   gtgcagaaattgattgcagcatccccacacctacttattgaaggagatccatgccttggc 111
            |||||||| |||||||||||||| |||||  ||||||||||||| ||||| |||||||||
Sbjct: 1309 gtgcagaagttgattgcagcatcgccacatgtacttattgaaggtgatccttgccttggc 1368

                  
Query: 112  agtgcc 117
            | ||||
Sbjct: 1369 aatgcc 1374



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 8    gggtctttgctgtccaagtgtttgagctgcat 39
            |||| ||||||| |||||| ||||||||||||
Sbjct: 1196 gggtttttgctgcccaagtttttgagctgcat 1227

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                            
Query: 52       gtgcagaaattgattgcagcatccccacacctacttattgaaggagatccatgccttggc 111
                |||||||| |||||||||||||| |||||  ||||||||||||| ||||| |||||||||
Sbjct: 21634494 gtgcagaagttgattgcagcatcgccacatgtacttattgaaggtgatccttgccttggc 21634435

                      
Query: 112      agtgcc 117
                | ||||
Sbjct: 21634434 aatgcc 21634429



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 8        gggtctttgctgtccaagtgtttgagctgcat 39
                |||| ||||||| |||||| ||||||||||||
Sbjct: 21634669 gggtttttgctgcccaagtttttgagctgcat 21634638

>dbj|AP003296.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0697C12
          Length = 149098

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                         
Query: 52    gtgcagaaattgattgcagcatccccacacctacttattgaaggagatccatgccttggc 111
             |||||||| |||||||||||||| |||||  ||||||||||||| ||||| |||||||||
Sbjct: 91047 gtgcagaagttgattgcagcatcgccacatgtacttattgaaggtgatccttgccttggc 90988

                   
Query: 112   agtgcc 117
             | ||||
Sbjct: 90987 aatgcc 90982



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 8     gggtctttgctgtccaagtgtttgagctgcat 39
             |||| ||||||| |||||| ||||||||||||
Sbjct: 91222 gggtttttgctgcccaagtttttgagctgcat 91191

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                           
Query: 52      gtgcagaaattgattgcagcatccccacacctacttattgaaggagatccatgccttggc 111
               |||||||| |||||||||||||| |||||  ||||||||||| | ||||| |||||||||
Sbjct: 2234556 gtgcagaagttgattgcagcatcgccacatgtacttattgaaagtgatccttgccttggc 2234497

                     
Query: 112     agtgcc 117
               | ||||
Sbjct: 2234496 aatgcc 2234491



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 8       gggtctttgctgtccaagtgtttgagctgcat 39
               |||| ||||||||||| || ||||||||||||
Sbjct: 2234713 gggtgtttgctgtccaggtttttgagctgcat 2234682

>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0535G04
          Length = 154180

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 52    gtgcagaaattgattgcagcatccccacacctacttattgaaggagatccatgccttggc 111
             |||||||| |||||||||||||| |||||  ||||||||||| | ||||| |||||||||
Sbjct: 94013 gtgcagaagttgattgcagcatcgccacatgtacttattgaaagtgatccttgccttggc 93954

                   
Query: 112   agtgcc 117
             | ||||
Sbjct: 93953 aatgcc 93948



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 8     gggtctttgctgtccaagtgtttgagctgcat 39
             |||| ||||||||||| || ||||||||||||
Sbjct: 94170 gggtgtttgctgtccaggtttttgagctgcat 94139

>emb|AL646098.9| Mouse DNA sequence from clone RP23-107I24 on chromosome 11, complete
              sequence
          Length = 200222

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 137    agacagctgcagccaatgtgga 158
              ||||||||||||||||||||||
Sbjct: 180814 agacagctgcagccaatgtgga 180793

>gb|AC140339.4| Mus musculus BAC clone RP24-64N14 from chromosome 17, complete sequence
          Length = 229599

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 91     gaaggagatccatgccttggc 111
              |||||||||||||||||||||
Sbjct: 202317 gaaggagatccatgccttggc 202337

>gb|AC154779.3| Mus musculus BAC clone RP24-461H19 from chromosome 17, complete
             sequence
          Length = 188929

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 91    gaaggagatccatgccttggc 111
             |||||||||||||||||||||
Sbjct: 14977 gaaggagatccatgccttggc 14997

>emb|BX935127.2| Gallus gallus finished cDNA, clone ChEST869e3
          Length = 1202

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 195  tgatgcacagcttaccctgca 215
            |||||||||||||||||||||
Sbjct: 1087 tgatgcacagcttaccctgca 1067

>ref|XM_524424.1| PREDICTED: Pan troglodytes similar to KIAA1947 protein (LOC469039),
           mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 139 acagctgcagccaatgtggaaaag 162
           ||||||||||||||||||| ||||
Sbjct: 455 acagctgcagccaatgtgggaaag 478

>gb|AC165151.2| Mus musculus BAC clone RP24-77O15 from chromosome 16, complete sequence
          Length = 177446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    acaagcaagaagaagacagc 143
              ||||||||||||||||||||
Sbjct: 150837 acaagcaagaagaagacagc 150818

>gb|AC156020.2| Mus musculus BAC clone RP23-343A9 from chromosome 16, complete sequence
          Length = 215559

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    acaagcaagaagaagacagc 143
              ||||||||||||||||||||
Sbjct: 157498 acaagcaagaagaagacagc 157517

>gb|AC124826.8| Mus musculus chromosome 12, clone RP23-455F18, complete sequence
          Length = 177979

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   gacaacaagcagaacaactg 380
             ||||||||||||||||||||
Sbjct: 73960 gacaacaagcagaacaactg 73979

>ref|XM_814831.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506789.240) partial mRNA
          Length = 723

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 aagaagacagctgcagccaa 152
           ||||||||||||||||||||
Sbjct: 571 aagaagacagctgcagccaa 590

>emb|BX571873.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome;
            segment 15/17
          Length = 349107

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 340  cctgctatgcctgctcctaccgacaaca 367
            ||||||||||||| |||| |||||||||
Sbjct: 2050 cctgctatgcctgttcctgccgacaaca 2023

>gb|AC114947.2| Homo sapiens chromosome 5 clone CTD-2636A23, complete sequence
          Length = 144405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   agctaaaagcaaagatgacg 193
             ||||||||||||||||||||
Sbjct: 29236 agctaaaagcaaagatgacg 29255

>gb|AC106800.2| Homo sapiens chromosome 5 clone RP11-447H19, complete sequence
          Length = 177449

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   agctaaaagcaaagatgacg 193
             ||||||||||||||||||||
Sbjct: 37490 agctaaaagcaaagatgacg 37471

>tpg|BK003262.1| TPA: TPA_inf: Drosophila melanogaster HDC00113 (HDC00113) gene,
            complete cds
          Length = 2254

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  aagaagacagctgcagccaa 152
            ||||||||||||||||||||
Sbjct: 1675 aagaagacagctgcagccaa 1656

>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone
             BACR30G21, complete sequence
          Length = 168370

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aagaagacagctgcagccaa 152
             ||||||||||||||||||||
Sbjct: 12468 aagaagacagctgcagccaa 12449

>emb|AJ277745.1|CSP277745 Coturnix japonica partial IRF-1 gene for interferon regulatory
            factor-1
          Length = 4912

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  ggaaaagcagcttctatcag 175
            ||||||||||||||||||||
Sbjct: 2383 ggaaaagcagcttctatcag 2402

>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete
             sequence
          Length = 308447

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aagaagacagctgcagccaa 152
             ||||||||||||||||||||
Sbjct: 49591 aagaagacagctgcagccaa 49572

>gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138)) DNA sequence, complete
             sequence
          Length = 79454

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aagaagacagctgcagccaa 152
             ||||||||||||||||||||
Sbjct: 16946 aagaagacagctgcagccaa 16927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,725,389
Number of Sequences: 3902068
Number of extensions: 3725389
Number of successful extensions: 71821
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71742
Number of HSP's gapped (non-prelim): 78
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)