ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet116c06 |
|---|---|
| Clone Library Name | barley_pub |
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGPGVSRQ 273 PA P RPP + GP PGPG RQ Sbjct: 452 PAGPPAQQRPPPQGGPPQPGPGPQRQ 477
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGPGVSRQ 273 PA P RPP + GP PGPG RQ Sbjct: 452 PAGPPAQQRPPPQGGPPQPGPGPQRQ 477
>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)| Length = 706 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGPGVSRQ 273 PA P RPP + GP PGPG RQ Sbjct: 452 PAGPPAQQRPPPQGGPPQPGPGPQRQ 477
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGPGVSRQ 273 PA P RPP + GP PGPG RQ Sbjct: 450 PAGPPAQQRPPPQGGPPQPGPGPQRQ 475
>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219| Length = 722 Score = 33.1 bits (74), Expect = 0.19 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGPGVSRQRGG 282 P PPS G+ P +R P SPG + RGG Sbjct: 594 PRPPSSGAGPGSRRKPASPGRTLRNGRGG 622
>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)| Length = 415 Score = 32.3 bits (72), Expect = 0.32 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGPGVSRQ 273 P+ P RPP + GP PGPG RQ Sbjct: 180 PSGPPAQQRPPPQGGPPQPGPGPQRQ 205
>RED1_RAT (P51400) Double-stranded RNA-specific editase 1 (EC 3.5.-.-) (dsRNA| adenosine deaminase) (RNA-editing deaminase 1) (RNA-editing enzyme 1) Length = 711 Score = 30.8 bits (68), Expect = 0.93 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -3 Query: 281 PPRCRETPGPGLTGPLFSGGRLPPLGGAGSRRTP 180 PP+ TPGPG PL +GG GG+ SR+ P Sbjct: 26 PPKDSSTPGPGEGIPLSNGG-----GGSTSRKRP 54
>RED1_MOUSE (Q91ZS8) Double-stranded RNA-specific editase 1 (EC 3.5.-.-) (dsRNA| adenosine deaminase) (RNA-editing deaminase 1) (RNA-editing enzyme 1) Length = 711 Score = 30.8 bits (68), Expect = 0.93 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -3 Query: 281 PPRCRETPGPGLTGPLFSGGRLPPLGGAGSRRTP 180 PP+ TPGPG PL +GG GG+ SR+ P Sbjct: 26 PPKDSSTPGPGEGIPLSNGG-----GGSTSRKRP 54
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGPGVSRQRGG 282 P PP+GG+ P K GP GP + GG Sbjct: 179 PPPPAGGAGPGPKPGPGPGGPKGGKMPGG 207
>OTO1_ONCKE (P83371) Otolin-1 precursor| Length = 508 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%) Frame = +1 Query: 202 PPSGGSRPPEKRGPVSPG-----PGVSRQRG 279 PP G PP +RGP PG PGV ++G Sbjct: 138 PPEKGRGPPGERGPPGPGAERGLPGVPGEKG 168
>DOS_HUMAN (Q8N350) Protein Dos| Length = 725 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Frame = +1 Query: 196 PAPPSGGSRP---PEKRGPVSPGPGVSRQRGG 282 PAPP+G +RP P +RG GP R GG Sbjct: 622 PAPPAGAARPARAPLRRGDSVDGPPDGRTLGG 653
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +1 Query: 187 RLLPAPPSGGSRPPEKRGPVSPGPGVSR 270 RL P P PP + P+SP P VSR Sbjct: 625 RLSPPPEDSPMSPPPEESPMSPPPEVSR 652 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +1 Query: 187 RLLPAPPSGGSRPPEKRGPVSPGPGVSR 270 RL P P PP + P+SP P SR Sbjct: 571 RLSPPPEESPMSPPPEESPMSPPPEASR 598
>EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Krox-20 protein)| Length = 470 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -3 Query: 260 PGPGLTGPLFSGG----RLPPLGGAGSRRTP 180 PG G+TGP SGG RLP G A TP Sbjct: 276 PGAGVTGPGASGGGEGPRLPGSGSAAVTATP 306
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 260 PGPGLTGPLFSGGRLPPLGGAGSRRTP 180 P PG T P F G R LGG R++P Sbjct: 213 PSPGPTPPPFPGNRGTALGGGSIRQSP 239
>COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undulin)| Length = 1796 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGP 258 PA PSG SRP P SPGP Sbjct: 1717 PAGPSGESRPGSPGPPGSPGP 1737
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 Query: 202 PPSGGSRPPEKRGPVSPGPGVSRQR 276 PP +RPP +R P +P P +R R Sbjct: 276 PPIPAARPPPRRTPGTPRPAAARAR 300
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 275 RCRETPGPGLTGPLFSGGRLPPLGGAG 195 R R PGP G + GG +PP G AG Sbjct: 1136 RGRGGPGPAPPGGMARGGMMPPRGRAG 1162
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 202 PPSGGSRPPEKRGPVSPGPGVSRQRGG 282 PP+GGS +RG PG G R+RGG Sbjct: 297 PPAGGSARRRRRGGGPPGRG-GRRRGG 322
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin receptor| 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 208 SGGSRPPEKRGPVSPGPGVSRQRGG 282 SGG++ P PV P PGVS G Sbjct: 1231 SGGAKGPPPEPPVPPVPGVSEDEAG 1255
>CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) (Cholinesterase-related cell division controller) Length = 1512 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +1 Query: 187 RLLPAPPSGGSRPPEKRGPVSPGPGVSRQR 276 R P+P GGS P +R P SP P SR+R Sbjct: 338 RKSPSPAGGGSSPYSRRLPRSPSP-YSRRR 366
>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) Length = 1511 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +1 Query: 187 RLLPAPPSGGSRPPEKRGPVSPGPGVSRQR 276 R P+P GGS P +R P SP P SR+R Sbjct: 339 RKSPSPAGGGSSPYSRRLPRSPSP-YSRRR 367
>COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor| Length = 1797 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGPVSPGP 258 PA PSG SRP P SPGP Sbjct: 1718 PAGPSGESRPGSPGPPGSPGP 1738
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 208 SGGSRPPEKRGPVSPGPGVSRQRGG 282 SGG++ P PV P PGVS G Sbjct: 1340 SGGAKGPPPEPPVPPVPGVSEDEAG 1364
>VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)| Length = 383 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%) Frame = +1 Query: 196 PAPPSGGSRPPEKRGP---VSPGPGVSRQRG 279 PAPP+GG PP P P PGVS G Sbjct: 165 PAPPAGGPPPPPGPPPPPGPPPPPGVSLSGG 195
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = +1 Query: 181 GVRLLPAPPSGGSRPPEKRGPVSPGP 258 GVRL PAPP PP +RGP P P Sbjct: 338 GVRL-PAPP-----PPPRRGPAPPPP 357
>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)| Length = 520 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/24 (50%), Positives = 12/24 (50%) Frame = +1 Query: 190 LLPAPPSGGSRPPEKRGPVSPGPG 261 L P P G PP RGP PG G Sbjct: 359 LPPVPMGGAPPPPTPRGPPPPGRG 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,906,896 Number of Sequences: 219361 Number of extensions: 313118 Number of successful extensions: 3204 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3182 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
