ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet116b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUSY_LYCES (P49037) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP ... 35 0.14
2SUS2_SOLTU (P49039) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP ... 35 0.14
3SUS1_SOLTU (P10691) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP ... 35 0.14
4SUOX_HUMAN (P51687) Sulfite oxidase, mitochondrial precursor (EC... 32 0.70
5SUOX_MACFA (Q60HD0) Sulfite oxidase, mitochondrial precursor (EC... 32 0.91
6TPSN_CANFA (Q5TJE4) Tapasin precursor (TPSN) (TPN) (TAP-binding ... 31 2.0
7NRAM_IARUE (P31510) Neuraminidase (EC 3.2.1.18) 31 2.0
8PME3_PHAVU (Q43111) Pectinesterase-3 precursor (EC 3.1.1.11) (Pe... 30 3.5
9NRAM_IAWHM (P05803) Neuraminidase (EC 3.2.1.18) 30 3.5
10NRAM_IATRA (P03472) Neuraminidase (EC 3.2.1.18) 30 3.5

>SUSY_LYCES (P49037) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP|
           glucosyltransferase)
          Length = 805

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 251 VREFVLKPFPADAPPPACTKNHSVPGFVFSNRGFSGNLYHDYTDVLVPL--FLSTRKFKG 424
           V E   +PF A  P P  TK+    G  F NR  S  ++HD  + + PL  FL    +KG
Sbjct: 132 VLELDFEPFTASFPKPTLTKSIG-NGVEFLNRHLSAKMFHD-KESMAPLLEFLRAHHYKG 189

Query: 425 EVQFL 439
           +   L
Sbjct: 190 KTMML 194



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>SUS2_SOLTU (P49039) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP|
           glucosyltransferase) (SS65)
          Length = 805

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 251 VREFVLKPFPADAPPPACTKNHSVPGFVFSNRGFSGNLYHDYTDVLVPL--FLSTRKFKG 424
           V E   +PF A  P P  TK+    G  F NR  S  ++HD  + + PL  FL    +KG
Sbjct: 132 VLELDFEPFTASFPKPTLTKSIG-NGVEFLNRHLSAKMFHD-KESMTPLLEFLRVHHYKG 189

Query: 425 EVQFL 439
           +   L
Sbjct: 190 KTMML 194



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>SUS1_SOLTU (P10691) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP|
           glucosyltransferase) (SS16)
          Length = 805

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 251 VREFVLKPFPADAPPPACTKNHSVPGFVFSNRGFSGNLYHDYTDVLVPL--FLSTRKFKG 424
           V E   +PF A  P P  TK+    G  F NR  S  ++HD  + + PL  FL    +KG
Sbjct: 132 VLELDFEPFTASFPKPTLTKSIG-NGVEFLNRHLSAKMFHD-KESMTPLLEFLRAHHYKG 189

Query: 425 EVQFL 439
           +   L
Sbjct: 190 KTMML 194



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>SUOX_HUMAN (P51687) Sulfite oxidase, mitochondrial precursor (EC 1.8.3.1)|
          Length = 488

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +2

Query: 179 IDSLDREWRTKPYARYHDPVAMTHVREFVLK-----PFPADAPPPACTKNHSVPGFVFSN 343
           I  L+ E +  P     DP A   VR   LK     PF A+ PP   T+N+  P  +F  
Sbjct: 100 IGELNPEDKVAPTVETSDPYADDPVRHPALKVNSQRPFNAEPPPELLTENYITPNPIFFT 159

Query: 344 R 346
           R
Sbjct: 160 R 160



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>SUOX_MACFA (Q60HD0) Sulfite oxidase, mitochondrial precursor (EC 1.8.3.1)|
          Length = 488

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +2

Query: 179 IDSLDREWRTKPYARYHDPVAMTHVREFVLK-----PFPADAPPPACTKNHSVPGFVFSN 343
           +  L+ E +  P     DP A   VR   LK     PF A+ PP   T+N+  P  +F  
Sbjct: 100 VGELNPEDKVAPTVETSDPYADDPVRHPALKVNSQRPFNAEPPPELLTENYITPNPIFFT 159

Query: 344 R 346
           R
Sbjct: 160 R 160



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>TPSN_CANFA (Q5TJE4) Tapasin precursor (TPSN) (TPN) (TAP-binding protein)|
          Length = 449

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 215 YARYHDPVAMTHVREFVLKPFPADAPPPACTKNHSVP 325
           Y + HDP          ++ +P+DAPPP C  +  +P
Sbjct: 65  YLKVHDPAGTLQA---AVRRYPSDAPPPHCELSRFIP 98



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>NRAM_IARUE (P31510) Neuraminidase (EC 3.2.1.18)|
          Length = 470

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +2

Query: 230 DPVAMTHVREFVLKPFPADAP----PPACTKNHSVPGFVFSNRGFSGNLYHDYTDVLVPL 397
           DPVAMTH  +++  P   D P    P     N   PG   +N G  G  Y D  +  +  
Sbjct: 308 DPVAMTHTSQYICSPVLTDNPRPNDPTVGKCNDPYPG--NNNNGVKGFSYLDGGNTWLGR 365

Query: 398 FLSTRKFKG 424
            +ST    G
Sbjct: 366 TISTASRSG 374



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>PME3_PHAVU (Q43111) Pectinesterase-3 precursor (EC 3.1.1.11) (Pectin|
           methylesterase 3) (PE 3)
          Length = 581

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -1

Query: 213 GLVLHSLSSESM*MVEALPTTRMSPAAS 130
           G+V+H+ +SES    +++P T +SPAAS
Sbjct: 49  GVVIHNRNSESSPSSDSVPQTELSPAAS 76



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>NRAM_IAWHM (P05803) Neuraminidase (EC 3.2.1.18)|
          Length = 470

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = +2

Query: 230 DPVAMTHVREFVLKPFPADAP----PPACTKNHSVPGFVFSNRGFSGNLYHD 373
           DPVAMTH  +++  P   D P    P     N   PG   +N G  G  Y D
Sbjct: 308 DPVAMTHTSQYICSPVLTDNPRPNDPTVGKCNDPYPG--NNNNGVKGFSYLD 357



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>NRAM_IATRA (P03472) Neuraminidase (EC 3.2.1.18)|
          Length = 470

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = +2

Query: 230 DPVAMTHVREFVLKPFPADAP----PPACTKNHSVPGFVFSNRGFSGNLYHD 373
           DPVAMTH  +++  P   D P    P     N   PG   +N G  G  Y D
Sbjct: 308 DPVAMTHTSQYICSPVLTDNPRPNDPTVGKCNDPYPG--NNNNGVKGFSYLD 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,931,990
Number of Sequences: 219361
Number of extensions: 660754
Number of successful extensions: 2305
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2305
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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