>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  274 bits (138), Expect = 2e-70
 Identities = 215/241 (89%), Gaps = 6/241 (2%)
 Strand = Plus / Plus

                                                                           
Query: 189     ccgccgcgtcaccgtcgtgtgcagcgccgc------cgagacctccgaggcggagcccgt 242
               |||| ||||||| |||||||||||||||||      |||| || | ||||||||||||| 
Sbjct: 6263962 ccgctgcgtcacggtcgtgtgcagcgccgcggcggccgaggccgcggaggcggagcccgc 6264021

                                                                           
Query: 243     ggagaagttccggctcgacaacctgagcccgcagaagggggcgcggcggaagccgaagcg 302
               ||||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||
Sbjct: 6264022 ggagaagttccggctcgacaacctgggcccgcagaaggggtcgcggcggcggccgaagcg 6264081

                                                                           
Query: 303     gaaggggcgcggtatctcggcggggcagggcgccagctgcgggttcggcatgcgcgggca 362
               |||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 6264082 gaaggggcgcggtatcgcggcggggcagggcgcgagctgcgggttcggcatgcgtggaca 6264141

                                                                           
Query: 363     gaagtcgcgctccgggcccggcgtccgccgagggttcgagggcgggcaaatgccgctcta 422
               |||||||||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 6264142 gaagtcgcgctcggggccaggcgtccggcgcgggttcgagggagggcagatgccgctcta 6264201

                
Query: 423     c 423
               |
Sbjct: 6264202 c 6264202



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 41      ccgccatggcgtccatcaccctcc 64
               ||||||||||||||||||||||||
Sbjct: 6263814 ccgccatggcgtccatcaccctcc 6263837



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 324     ggggcagggcgccagctgcggg 345
               ||||||||||||||||||||||
Sbjct: 9272159 ggggcagggcgccagctgcggg 9272138

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  274 bits (138), Expect = 2e-70
 Identities = 215/241 (89%), Gaps = 6/241 (2%)
 Strand = Plus / Plus

                                                                           
Query: 189     ccgccgcgtcaccgtcgtgtgcagcgccgc------cgagacctccgaggcggagcccgt 242
               |||| ||||||| |||||||||||||||||      |||| || | ||||||||||||| 
Sbjct: 6263175 ccgctgcgtcacggtcgtgtgcagcgccgcggcggccgaggccgcggaggcggagcccgc 6263234

                                                                           
Query: 243     ggagaagttccggctcgacaacctgagcccgcagaagggggcgcggcggaagccgaagcg 302
               ||||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||
Sbjct: 6263235 ggagaagttccggctcgacaacctgggcccgcagaaggggtcgcggcggcggccgaagcg 6263294

                                                                           
Query: 303     gaaggggcgcggtatctcggcggggcagggcgccagctgcgggttcggcatgcgcgggca 362
               |||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 6263295 gaaggggcgcggtatcgcggcggggcagggcgcgagctgcgggttcggcatgcgtggaca 6263354

                                                                           
Query: 363     gaagtcgcgctccgggcccggcgtccgccgagggttcgagggcgggcaaatgccgctcta 422
               |||||||||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 6263355 gaagtcgcgctcggggccaggcgtccggcgcgggttcgagggagggcagatgccgctcta 6263414

                
Query: 423     c 423
               |
Sbjct: 6263415 c 6263415



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 41      ccgccatggcgtccatcaccctcc 64
               ||||||||||||||||||||||||
Sbjct: 6263027 ccgccatggcgtccatcaccctcc 6263050



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 324     ggggcagggcgccagctgcggg 345
               ||||||||||||||||||||||
Sbjct: 9269992 ggggcagggcgccagctgcggg 9269971

>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0090D11,
              complete sequence
          Length = 115403

 Score =  274 bits (138), Expect = 2e-70
 Identities = 215/241 (89%), Gaps = 6/241 (2%)
 Strand = Plus / Plus

                                                                          
Query: 189    ccgccgcgtcaccgtcgtgtgcagcgccgc------cgagacctccgaggcggagcccgt 242
              |||| ||||||| |||||||||||||||||      |||| || | ||||||||||||| 
Sbjct: 102573 ccgctgcgtcacggtcgtgtgcagcgccgcggcggccgaggccgcggaggcggagcccgc 102632

                                                                          
Query: 243    ggagaagttccggctcgacaacctgagcccgcagaagggggcgcggcggaagccgaagcg 302
              ||||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||
Sbjct: 102633 ggagaagttccggctcgacaacctgggcccgcagaaggggtcgcggcggcggccgaagcg 102692

                                                                          
Query: 303    gaaggggcgcggtatctcggcggggcagggcgccagctgcgggttcggcatgcgcgggca 362
              |||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 102693 gaaggggcgcggtatcgcggcggggcagggcgcgagctgcgggttcggcatgcgtggaca 102752

                                                                          
Query: 363    gaagtcgcgctccgggcccggcgtccgccgagggttcgagggcgggcaaatgccgctcta 422
              |||||||||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 102753 gaagtcgcgctcggggccaggcgtccggcgcgggttcgagggagggcagatgccgctcta 102812

               
Query: 423    c 423
              |
Sbjct: 102813 c 102813



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 41     ccgccatggcgtccatcaccctcc 64
              ||||||||||||||||||||||||
Sbjct: 102425 ccgccatggcgtccatcaccctcc 102448

>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0024O21, complete sequence
          Length = 155651

 Score =  274 bits (138), Expect = 2e-70
 Identities = 215/241 (89%), Gaps = 6/241 (2%)
 Strand = Plus / Plus

                                                                         
Query: 189   ccgccgcgtcaccgtcgtgtgcagcgccgc------cgagacctccgaggcggagcccgt 242
             |||| ||||||| |||||||||||||||||      |||| || | ||||||||||||| 
Sbjct: 77170 ccgctgcgtcacggtcgtgtgcagcgccgcggcggccgaggccgcggaggcggagcccgc 77229

                                                                         
Query: 243   ggagaagttccggctcgacaacctgagcccgcagaagggggcgcggcggaagccgaagcg 302
             ||||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||
Sbjct: 77230 ggagaagttccggctcgacaacctgggcccgcagaaggggtcgcggcggcggccgaagcg 77289

                                                                         
Query: 303   gaaggggcgcggtatctcggcggggcagggcgccagctgcgggttcggcatgcgcgggca 362
             |||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 77290 gaaggggcgcggtatcgcggcggggcagggcgcgagctgcgggttcggcatgcgtggaca 77349

                                                                         
Query: 363   gaagtcgcgctccgggcccggcgtccgccgagggttcgagggcgggcaaatgccgctcta 422
             |||||||||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 77350 gaagtcgcgctcggggccaggcgtccggcgcgggttcgagggagggcagatgccgctcta 77409

              
Query: 423   c 423
             |
Sbjct: 77410 c 77410



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 41    ccgccatggcgtccatcaccctcc 64
             ||||||||||||||||||||||||
Sbjct: 77022 ccgccatggcgtccatcaccctcc 77045

>dbj|AK066527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071N20, full
           insert sequence
          Length = 967

 Score =  258 bits (130), Expect = 1e-65
 Identities = 213/241 (88%), Gaps = 6/241 (2%)
 Strand = Plus / Plus

                                                                       
Query: 189 ccgccgcgtcaccgtcgtgtgcagcgccgc------cgagacctccgaggcggagcccgt 242
           |||| ||||||| |||||||||||||||||      |||| || | ||||||||||||| 
Sbjct: 204 ccgctgcgtcacggtcgtgtgcagcgccgcggcggccgaggccgcggaggcggagcccgc 263

                                                                       
Query: 243 ggagaagttccggctcgacaacctgagcccgcagaagggggcgcggcggaagccgaagcg 302
           ||||||||||||||||||||||||| |||||||||||||| ||||||||   ||||||||
Sbjct: 264 ggagaagttccggctcgacaacctgggcccgcagaaggggtcgcggcggcgcccgaagcg 323

                                                                       
Query: 303 gaaggggcgcggtatctcggcggggcagggcgccagctgcgggttcggcatgcgcgggca 362
           |||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 324 gaaggggcgcggtatcgcggcggggcagggcgcgagctgcgggttcggcatgcgtggaca 383

                                                                       
Query: 363 gaagtcgcgctccgggcccggcgtccgccgagggttcgagggcgggcaaatgccgctcta 422
           |||||||||||| ||||| |||||||| || ||||||||||| ||| | |||||||||||
Sbjct: 384 gaagtcgcgctcggggccaggcgtccggcgcgggttcgagggagggtagatgccgctcta 443

            
Query: 423 c 423
           |
Sbjct: 444 c 444



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 ccgccatggcgtccatcaccctcc 64
          ||||||||||||||||||||||||
Sbjct: 56 ccgccatggcgtccatcaccctcc 79

>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 328    cagggcgccagctgcgggttcggcatgcgcgggcagaagtcgcgctc 374
              ||||||||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 231365 cagggcgccagctgcggcttcggcatgcgtggccagaaatcccgctc 231411

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 328    cagggcgccagctgcgggttcggcatgcgcgggcagaagtcgcgctc 374
              ||||| ||||||||||| ||||| |||||||| ||||| || |||||
Sbjct: 369498 cagggtgccagctgcggcttcggtatgcgcggccagaaatcccgctc 369452

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 205     gtgtgcagcgccgccgagacctc 227
               |||||||||||||||||||||||
Sbjct: 4617716 gtgtgcagcgccgccgagacctc 4617738

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                           
Query: 349     ggcatgcgcgggcagaagtcgcgctccgggcccggcgtccgccgagggttcgagggcggg 408
               ||||||||||| |||||||  |||||||||  ||| || ||||  || ||||||||||| 
Sbjct: 4111186 ggcatgcgcggtcagaagtgccgctccgggggcggtgtgcgccccggcttcgagggcggc 4111127

                              
Query: 409     caaatgccgctctac 423
               || || |||||||||
Sbjct: 4111126 cagatcccgctctac 4111112

>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032O19, from chromosome 3, complete sequence
          Length = 142248

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 324   ggggcagggcgccagctgcggg 345
             ||||||||||||||||||||||
Sbjct: 14232 ggggcagggcgccagctgcggg 14253

>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0014A21, from chromosome 3, complete sequence
          Length = 134014

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 324   ggggcagggcgccagctgcggg 345
             ||||||||||||||||||||||
Sbjct: 84094 ggggcagggcgccagctgcggg 84115

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 287     ggcggaagccgaagcggaagg 307
               |||||||||||||||||||||
Sbjct: 2262643 ggcggaagccgaagcggaagg 2262623

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 284     cgcggcggaagccgaagcgg 303
               ||||||||||||||||||||
Sbjct: 2203580 cgcggcggaagccgaagcgg 2203561

>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7
          Length = 344615

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    caacctgagcccgcagaagg 280
              ||||||||||||||||||||
Sbjct: 127582 caacctgagcccgcagaagg 127563

>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10
          Length = 313050

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ttcgagggcgggcaaatgcc 416
              ||||||||||||||||||||
Sbjct: 160174 ttcgagggcgggcaaatgcc 160193

>gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionophore nanchangmycin
              biosynthetic gene cluster, complete sequence
          Length = 132544

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 284    cgcggcggaagccgaagcggaagg 307
              |||| |||||||||||||||||||
Sbjct: 129808 cgcgccggaagccgaagcggaagg 129831

>gb|AC160764.2| Ornithorhynchus anatinus BAC clone OABb-454A1 from chromosome unknown,
             complete sequence
          Length = 125050

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    cctccgccatggcgtccatc 57
             ||||||||||||||||||||
Sbjct: 95812 cctccgccatggcgtccatc 95831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,170,436
Number of Sequences: 3902068
Number of extensions: 1170436
Number of successful extensions: 22537
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22152
Number of HSP's gapped (non-prelim): 385
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)