ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet115d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular car... 32 0.35
2AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 31 0.78
3DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-ex... 29 3.0
4GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-C... 29 3.9

>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel|
           gene 3 protein)
          Length = 836

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 138 DPCGTRARQSTETSSGIPGMRSTWSASHPWT--RLFGFIIA 22
           D CG     + +T S +P   S WSASHP +  ++ G+I++
Sbjct: 304 DICGGSELDAVKTDSSLPSPSSLWSASHPSSSKKMDGYILS 344



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>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 77  LIPGMPDDVSVDCLARVPHGSYRSMRRVCRGWRSAAAAP 193
           LI G+P+D++  CL R+P+  +   R V   W      P
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNP 66



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>DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-expressed novel|
           gene 3 protein)
          Length = 778

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 138 DPCGTRARQSTETSSGIPGMRSTWSASHPWT--RLFGFIIA 22
           D C      +T+T + +P   S WSASHP +  ++ G+I++
Sbjct: 260 DICIGSELNATKTDNSLPSPSSLWSASHPASSKKMDGYILS 300



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>GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-CH-I 1)|
          Length = 190

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 35  PKSRVQGWEADHVDLIPGMPDDVSVDCLARVPHGSYRSMRRVCRGW 172
           P  R    E ++ +++  + +DVS + L   P  + ++M+ +CRG+
Sbjct: 5   PTGRSMSLEQNYTEILSQIGEDVSREGLLDTPKRAAKAMKYLCRGY 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,543,354
Number of Sequences: 219361
Number of extensions: 295206
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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