ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet115d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome... 129 3e-27
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 129 3e-27
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 129 3e-27
4ref|XM_466267.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.16
5ref|XM_852171.1| PREDICTED: Canis familiaris similar to Dolichyl... 44 0.16
6ref|XM_843737.1| PREDICTED: Canis familiaris similar to Dolichyl... 44 0.16
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.16
8dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.16
9tpg|BK000629.1| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) g... 42 0.62
10dbj|AB087501.1| Mus musculus js genes for Jackson shaker and hyp... 42 0.62
11emb|AL603828.9| Mouse DNA sequence from clone RP23-117K15 on chr... 42 0.62
12ref|XM_480271.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.4
13ref|XM_473255.1| Oryza sativa (japonica cultivar-group), predic... 40 2.4
14gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, co... 40 2.4
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
17gb|AE005156.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 1... 40 2.4
18dbj|AB154372.1| Ipomoea tricolor ItIVS gene for bHLH transcripti... 40 2.4
19dbj|AB154371.1| Ipomoea tricolor ItIVS gene for bHLH transcripti... 40 2.4
20dbj|AB154370.1| Ipomoea tricolor ItIVS mRNA for bHLH transcripti... 40 2.4
21dbj|AB154369.1| Ipomoea purpurea IpIVS mRNA for bHLH transcripti... 40 2.4
22dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
23dbj|AK064945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.4
24emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 2.4
25dbj|AB232775.1| Ipomoea nil InbHLH2 mRNA for bHLH transcriptiona... 40 2.4
26ref|NM_187543.1| Oryza sativa (japonica cultivar-group), predic... 38 9.7
27ref|XM_470531.1| Oryza sativa (japonica cultivar-group), predic... 38 9.7
28ref|NM_015094.1| Homo sapiens hypermethylated in cancer 2 (HIC2)... 38 9.7
29gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
30gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 9.7
31gb|BC020225.1| Homo sapiens cDNA clone MGC:31920 IMAGE:4565073, ... 38 9.7
32ref|XM_361279.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 9.7
33gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 9.7
34ref|XM_417994.1| PREDICTED: Gallus gallus similar to turkey RAP1... 38 9.7
35gb|BC072398.1| Homo sapiens similar to phosphatidylinositol 4-ki... 38 9.7
36gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 9.7
37gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
38gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome ... 38 9.7
39ref|NM_016329.2| Homo sapiens Scm-like with four mbt domains 1 (... 38 9.7
40ref|NM_001005158.1| Homo sapiens Scm-like with four mbt domains ... 38 9.7
41gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.7
42ref|XM_977200.1| PREDICTED: Mus musculus hypothetical protein LO... 38 9.7
43ref|XM_992645.1| PREDICTED: Mus musculus expressed sequence AA67... 38 9.7
44emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 38 9.7
45emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 9.7
46gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosom... 38 9.7
47gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, comple... 38 9.7
48dbj|AB028943.2| Homo sapiens mRNA for KIAA1020 protein, partial cds 38 9.7
49gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 38 9.7
50gb|AY098942.1| Homarus americanus ionotropic glutamate receptor ... 38 9.7
51gb|AC129097.27| Papio anubis clone rp41-53o7, complete sequence 38 9.7
52emb|CR603232.1| full-length cDNA clone CS0DF026YA12 of Fetal bra... 38 9.7
53emb|CR599290.1| full-length cDNA clone CS0DA002YA13 of Neuroblas... 38 9.7
54gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 38 9.7
55dbj|AK154826.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 38 9.7
56ref|NM_199283.4| Homo sapiens hypothetical protein LOC220686 (LO... 38 9.7
57gb|AC007957.37| Homo sapiens chromosome 22 clone b445 map 22q11,... 38 9.7
58gb|AC023490.5| Homo sapiens chromosome 22 clone b33l19 map 22q11... 38 9.7
59dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
60gb|AC154436.2| Mus musculus BAC clone RP24-192B24 from chromosom... 38 9.7
61gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 9.7
62ref|XM_218851.3| PREDICTED: Rattus norvegicus interleukin 16 (Il... 38 9.7
63gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
64gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
65gb|AC002523.1|AC002523 Homo sapiens Xq28 BACs 360 F12, GSHB-555C... 38 9.7
66dbj|AK109915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.7
67dbj|AK108730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.7
68emb|AJ323956.1|HSA323956 Homo sapiens genomic sequence surroundi... 38 9.7
69emb|AJ323951.1|HSA323951 Homo sapiens genomic sequence surroundi... 38 9.7
70gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 38 9.7
71emb|CT573418.2| Pan troglodytes chromosome X clone PTB-046H01 ma... 38 9.7
72dbj|AP000744.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 9.7
73emb|CT574566.2| Pan troglodytes chromosome X clone CH251-413C05 ... 38 9.7
74gb|M11911.1|HS5P67K Human cytomegalovirus 67-kDa phosphorylated ... 38 9.7
75dbj|AP000557.2| Homo sapiens genomic DNA, chromosome 22q11.2, BC... 38 9.7
76dbj|AP000556.2| Homo sapiens genomic DNA, chromosome 22q11.2, BC... 38 9.7 
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0004P24, complete sequence
          Length = 137721

 Score =  129 bits (65), Expect = 3e-27
 Identities = 101/113 (89%)
 Strand = Plus / Plus

                                                                         
Query: 68    cacgtcgacctcatcccggggatgcccgacgacgtctccgtcgactgcctggcgcgcgtc 127
             |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 18281 cacgtcgagctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 18340

                                                                  
Query: 128   ccgcacggatcctaccgctcgatgcgccgtgtgtgccgcggctggcggagcgc 180
             ||||||||  |  ||||  ||||||| || ||||||||||| ||| |||||||
Sbjct: 18341 ccgcacggggctcaccgggcgatgcggcgcgtgtgccgcgggtggaggagcgc 18393
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  129 bits (65), Expect = 3e-27
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                           
Query: 68      cacgtcgacctcatcccggggatgcccgacgacgtctccgtcgactgcctggcgcgcgtc 127
               |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7798674 cacgtcgagctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 7798615

                                                                    
Query: 128     ccgcacggatcctaccgctcgatgcgccgtgtgtgccgcggctggcggagcgc 180
               ||||||||  |  ||||  ||||||| || ||||||||||| ||| |||||||
Sbjct: 7798614 ccgcacggggctcaccgggcgatgcggcgcgtgtgccgcgggtggaggagcgc 7798562



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 170      tggcggagcgccgccgccg 188
                |||||||||||||||||||
Sbjct: 18257316 tggcggagcgccgccgccg 18257334
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  129 bits (65), Expect = 3e-27
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                           
Query: 68      cacgtcgacctcatcccggggatgcccgacgacgtctccgtcgactgcctggcgcgcgtc 127
               |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7868761 cacgtcgagctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 7868702

                                                                    
Query: 128     ccgcacggatcctaccgctcgatgcgccgtgtgtgccgcggctggcggagcgc 180
               ||||||||  |  ||||  ||||||| || ||||||||||| ||| |||||||
Sbjct: 7868701 ccgcacggggctcaccgggcgatgcggcgcgtgtgccgcgggtggaggagcgc 7868649



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 170      tggcggagcgccgccgccg 188
                |||||||||||||||||||
Sbjct: 18416596 tggcggagcgccgccgccg 18416614
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>ref|XM_466267.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1200

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 77  ctcatcccggggatgcccgacgacgtctccgtcgactgcctggcgcgcgt 126
           |||||||||||| |||| ||||||||  || | || ||||||||||||||
Sbjct: 70  ctcatcccggggttgccggacgacgtggccatggagtgcctggcgcgcgt 119
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>ref|XM_852171.1| PREDICTED: Canis familiaris similar to
           Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (Ribophorin
           I) (RPN-I), transcript variant 4 (LOC476516), mRNA
          Length = 1957

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 172 gcggagcgccgccgccgccccg 193
           ||||||||||||||||||||||
Sbjct: 52  gcggagcgccgccgccgccccg 31
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>ref|XM_843737.1| PREDICTED: Canis familiaris similar to
           Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (Ribophorin
           I) (RPN-I), transcript variant 3 (LOC476516), mRNA
          Length = 2110

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 172 gcggagcgccgccgccgccccg 193
           ||||||||||||||||||||||
Sbjct: 52  gcggagcgccgccgccgccccg 31
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 77       ctcatcccggggatgcccgacgacgtctccgtcgactgcctggcgcgcgt 126
                |||||||||||| |||| ||||||||  || | || ||||||||||||||
Sbjct: 21385077 ctcatcccggggttgccggacgacgtggccatggagtgcctggcgcgcgt 21385126
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>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1712_E04
          Length = 110098

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 77    ctcatcccggggatgcccgacgacgtctccgtcgactgcctggcgcgcgt 126
             |||||||||||| |||| ||||||||  || | || ||||||||||||||
Sbjct: 45030 ctcatcccggggttgccggacgacgtggccatggagtgcctggcgcgcgt 45079
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>tpg|BK000629.1| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) gene, complete cds
          Length = 53301

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     aagctcacacaagtcacaagc 24
             |||||||||||||||||||||
Sbjct: 25451 aagctcacacaagtcacaagc 25471
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>dbj|AB087501.1| Mus musculus js genes for Jackson shaker and hypothetical protein,
             complete and partial cds
          Length = 72195

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     aagctcacacaagtcacaagc 24
             |||||||||||||||||||||
Sbjct: 54767 aagctcacacaagtcacaagc 54787
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>emb|AL603828.9| Mouse DNA sequence from clone RP23-117K15 on chromosome 11, complete
              sequence
          Length = 210982

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      aagctcacacaagtcacaagc 24
              |||||||||||||||||||||
Sbjct: 132673 aagctcacacaagtcacaagc 132693
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>ref|XM_480271.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 ggcggagcgccgccgccgcc 190
           ||||||||||||||||||||
Sbjct: 356 ggcggagcgccgccgccgcc 337
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>ref|XM_473255.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2079

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 gagcgccgccgccgccccgg 194
           ||||||||||||||||||||
Sbjct: 120 gagcgccgccgccgccccgg 101
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>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence
          Length = 268984

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    ggctggcggagcgccgccgccgcc 190
              ||||||||||||| ||||||||||
Sbjct: 105617 ggctggcggagcgacgccgccgcc 105640
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 175      gagcgccgccgccgccccgg 194
                ||||||||||||||||||||
Sbjct: 26369656 gagcgccgccgccgccccgg 26369637
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     ggcggagcgccgccgccgcc 190
               ||||||||||||||||||||
Sbjct: 4005382 ggcggagcgccgccgccgcc 4005363
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>gb|AE005156.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 17 of 32 of the
            complete genome
          Length = 10091

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  cggctggcggagcgccgccg 185
            ||||||||||||||||||||
Sbjct: 4952 cggctggcggagcgccgccg 4933
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>dbj|AB154372.1| Ipomoea tricolor ItIVS gene for bHLH transcription activator Ivory
             seed, ivory seed-variegation (ivs-v) mutant alele
          Length = 13370

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   ctggcggagcgccgccgccg 188
             ||||||||||||||||||||
Sbjct: 10337 ctggcggagcgccgccgccg 10356
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>dbj|AB154371.1| Ipomoea tricolor ItIVS gene for bHLH transcription activator Ivory
            seed, complete cds
          Length = 10104

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  ctggcggagcgccgccgccg 188
            ||||||||||||||||||||
Sbjct: 7072 ctggcggagcgccgccgccg 7091
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>dbj|AB154370.1| Ipomoea tricolor ItIVS mRNA for bHLH transcription activator Ivory
            seed, complete cds
          Length = 2387

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  ctggcggagcgccgccgccg 188
            ||||||||||||||||||||
Sbjct: 1609 ctggcggagcgccgccgccg 1628
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>dbj|AB154369.1| Ipomoea purpurea IpIVS mRNA for bHLH transcription activator Ivory
            seed, complete cds
          Length = 2314

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  ctggcggagcgccgccgccg 188
            ||||||||||||||||||||
Sbjct: 1567 ctggcggagcgccgccgccg 1586
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>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0462E11
          Length = 166115

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   ggcggagcgccgccgccgcc 190
             ||||||||||||||||||||
Sbjct: 92679 ggcggagcgccgccgccgcc 92660
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>dbj|AK064945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P15, full
           insert sequence
          Length = 2455

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 gagcgccgccgccgccccgg 194
           ||||||||||||||||||||
Sbjct: 304 gagcgccgccgccgccccgg 285
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
             complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   gagcgccgccgccgccccgg 194
             ||||||||||||||||||||
Sbjct: 10289 gagcgccgccgccgccccgg 10270
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>dbj|AB232775.1| Ipomoea nil InbHLH2 mRNA for bHLH transcriptional factor, complete
            cds, strain:TKS
          Length = 2309

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  ctggcggagcgccgccgccg 188
            ||||||||||||||||||||
Sbjct: 1590 ctggcggagcgccgccgccg 1609
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>ref|NM_187543.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1572

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 177  gcgccgccgccgccccgga 195
            |||||||||||||||||||
Sbjct: 1279 gcgccgccgccgccccgga 1261
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>ref|XM_470531.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1578

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 175  gagcgccgccgccgccccg 193
            |||||||||||||||||||
Sbjct: 1443 gagcgccgccgccgccccg 1425
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>ref|NM_015094.1| Homo sapiens hypermethylated in cancer 2 (HIC2), mRNA
          Length = 6794

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 166 cggctggcggagcgccgccgccg 188
           |||| ||||||||||||||||||
Sbjct: 124 cggcgggcggagcgccgccgccg 146
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>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08,
              complete sequence
          Length = 136853

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 170    tggcggagcgccgccgccg 188
              |||||||||||||||||||
Sbjct: 115912 tggcggagcgccgccgccg 115930
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 175     gagcgccgccgccgccccg 193
               |||||||||||||||||||
Sbjct: 3255812 gagcgccgccgccgccccg 3255794
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>gb|BC020225.1| Homo sapiens cDNA clone MGC:31920 IMAGE:4565073, complete cds
          Length = 2297

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 166 cggctggcggagcgccgccgccg 188
           |||| ||||||||||||||||||
Sbjct: 134 cggcgggcggagcgccgccgccg 156
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>ref|XM_361279.1| Magnaporthe grisea 70-15 hypothetical protein (MG03753.4) partial
           mRNA
          Length = 1557

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 177 gcgccgccgccgccccgga 195
           |||||||||||||||||||
Sbjct: 463 gcgccgccgccgccccgga 481
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 176     agcgccgccgccgccccgg 194
               |||||||||||||||||||
Sbjct: 1991410 agcgccgccgccgccccgg 1991428
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>ref|XM_417994.1| PREDICTED: Gallus gallus similar to turkey RAP1Ab (LOC419867), mRNA
          Length = 1350

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 172 gcggagcgccgccgccgcc 190
           |||||||||||||||||||
Sbjct: 10  gcggagcgccgccgccgcc 28
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>gb|BC072398.1| Homo sapiens similar to phosphatidylinositol 4-kinase alpha, mRNA
           (cDNA clone IMAGE:5770421), complete cds
          Length = 1945

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 166 cggctggcggagcgccgccgccg 188
           |||| ||||||||||||||||||
Sbjct: 143 cggcgggcggagcgccgccgccg 165
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 175    gagcgccgccgccgccccg 193
              |||||||||||||||||||
Sbjct: 714139 gagcgccgccgccgccccg 714121
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>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09,
             complete sequence
          Length = 43883

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 170   tggcggagcgccgccgccg 188
             |||||||||||||||||||
Sbjct: 24575 tggcggagcgccgccgccg 24593
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>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence
          Length = 202234

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     tcacacaagtcacaagcta 26
             |||||||||||||||||||
Sbjct: 82724 tcacacaagtcacaagcta 82742
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>ref|NM_016329.2| Homo sapiens Scm-like with four mbt domains 1 (SFMBT1), transcript
           variant 3, mRNA
          Length = 3512

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 172 gcggagcgccgccgccgcc 190
           |||||||||||||||||||
Sbjct: 2   gcggagcgccgccgccgcc 20
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>ref|NM_001005158.1| Homo sapiens Scm-like with four mbt domains 1 (SFMBT1), transcript
           variant 2, mRNA
          Length = 3631

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 172 gcggagcgccgccgccgcc 190
           |||||||||||||||||||
Sbjct: 2   gcggagcgccgccgccgcc 20
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 175     gagcgccgccgccgccccg 193
               |||||||||||||||||||
Sbjct: 4146553 gagcgccgccgccgccccg 4146535



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 177    gcgccgccgccgccccgga 195
              |||||||||||||||||||
Sbjct: 791720 gcgccgccgccgccccgga 791738
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>ref|XM_977200.1| PREDICTED: Mus musculus hypothetical protein LOC665475 (LOC665475),
           mRNA
          Length = 960

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 172 gcggagcgccgccgccgcc 190
           |||||||||||||||||||
Sbjct: 669 gcggagcgccgccgccgcc 651
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>ref|XM_992645.1| PREDICTED: Mus musculus expressed sequence AA673488 (AA673488),
           mRNA
          Length = 5893

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 163 ccgcggctggcggagcgccgccg 185
           |||||||||| ||||||||||||
Sbjct: 338 ccgcggctggaggagcgccgccg 316
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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 165    gcggctggcggagcgccgc 183
              |||||||||||||||||||
Sbjct: 248527 gcggctggcggagcgccgc 248545
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 175    gagcgccgccgccgccccg 193
              |||||||||||||||||||
Sbjct: 522784 gagcgccgccgccgccccg 522766
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>gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosome 12, complete
            sequence
          Length = 202583

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    tcacacaagtcacaagcta 26
            |||||||||||||||||||
Sbjct: 2176 tcacacaagtcacaagcta 2194
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>gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, complete sequence
          Length = 171289

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 172   gcggagcgccgccgccgcc 190
             |||||||||||||||||||
Sbjct: 66297 gcggagcgccgccgccgcc 66279
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>dbj|AB028943.2| Homo sapiens mRNA for KIAA1020 protein, partial cds
          Length = 6793

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 166 cggctggcggagcgccgccgccg 188
           |||| ||||||||||||||||||
Sbjct: 124 cggcgggcggagcgccgccgccg 146
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 174    ggagcgccgccgccgcccc 192
              |||||||||||||||||||
Sbjct: 636824 ggagcgccgccgccgcccc 636842
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>gb|AY098942.1| Homarus americanus ionotropic glutamate receptor subunit mRNA,
            complete cds
          Length = 3514

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   atgatgaacccaaagagcc 44
            |||||||||||||||||||
Sbjct: 2150 atgatgaacccaaagagcc 2132
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>gb|AC129097.27| Papio anubis clone rp41-53o7, complete sequence
          Length = 186113

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 166    cggctggcggagcgccgccgccg 188
              |||| ||||||||||||||||||
Sbjct: 155929 cggcgggcggagcgccgccgccg 155907
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>emb|CR603232.1| full-length cDNA clone CS0DF026YA12 of Fetal brain of Homo sapiens
           (human)
          Length = 1906

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 166 cggctggcggagcgccgccgccg 188
           |||| ||||||||||||||||||
Sbjct: 163 cggcgggcggagcgccgccgccg 185
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>emb|CR599290.1| full-length cDNA clone CS0DA002YA13 of Neuroblastoma of Homo
           sapiens (human)
          Length = 2294

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 166 cggctggcggagcgccgccgccg 188
           |||| ||||||||||||||||||
Sbjct: 176 cggcgggcggagcgccgccgccg 198
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 176    agcgccgccgccgccccgg 194
              |||||||||||||||||||
Sbjct: 402597 agcgccgccgccgccccgg 402615
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>dbj|AK154826.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630107N08
           product:Scm-like with four mbt domains 1, full insert
           sequence
          Length = 2284

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 172 gcggagcgccgccgccgcc 190
           |||||||||||||||||||
Sbjct: 31  gcggagcgccgccgccgcc 49
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>ref|NM_199283.4| Homo sapiens hypothetical protein LOC220686 (LOC220686), mRNA
          Length = 2298

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 166 cggctggcggagcgccgccgccg 188
           |||| ||||||||||||||||||
Sbjct: 134 cggcgggcggagcgccgccgccg 156
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>gb|AC007957.37| Homo sapiens chromosome 22 clone b445 map 22q11, complete sequence
          Length = 212651

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 166    cggctggcggagcgccgccgccg 188
              |||| ||||||||||||||||||
Sbjct: 182475 cggcgggcggagcgccgccgccg 182453



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 166   cggctggcggagcgccgccgccg 188
             |||| ||||||||||||||||||
Sbjct: 82657 cggcgggcggagcgccgccgccg 82679
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>gb|AC023490.5| Homo sapiens chromosome 22 clone b33l19 map 22q11, complete sequence
          Length = 176051

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 166   cggctggcggagcgccgccgccg 188
             |||| ||||||||||||||||||
Sbjct: 94293 cggcgggcggagcgccgccgccg 94271
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 175     gagcgccgccgccgccccg 193
               |||||||||||||||||||
Sbjct: 4146662 gagcgccgccgccgccccg 4146644



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 177    gcgccgccgccgccccgga 195
              |||||||||||||||||||
Sbjct: 791718 gcgccgccgccgccccgga 791736
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>gb|AC154436.2| Mus musculus BAC clone RP24-192B24 from chromosome 14, complete sequence
          Length = 180476

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 172    gcggagcgccgccgccgcc 190
              |||||||||||||||||||
Sbjct: 130403 gcggagcgccgccgccgcc 130385
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 175     gagcgccgccgccgccccg 193
               |||||||||||||||||||
Sbjct: 3565335 gagcgccgccgccgccccg 3565353
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>ref|XM_218851.3| PREDICTED: Rattus norvegicus interleukin 16 (Il16), mRNA
          Length = 4860

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   aagagccgtgtccaggggt 56
            |||||||||||||||||||
Sbjct: 1886 aagagccgtgtccaggggt 1904
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090O10, complete sequence
          Length = 162132

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 177   gcgccgccgccgccccgga 195
             |||||||||||||||||||
Sbjct: 87265 gcgccgccgccgccccgga 87283
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>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 175   gagcgccgccgccgccccg 193
             |||||||||||||||||||
Sbjct: 47190 gagcgccgccgccgccccg 47172
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>gb|AC002523.1|AC002523 Homo sapiens Xq28 BACs 360 F12, GSHB-555C13, complete sequence
          Length = 228516

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     ctatgatgaacccaaagag 42
              |||||||||||||||||||
Sbjct: 198125 ctatgatgaacccaaagag 198107
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>dbj|AK109915.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C06, full
            insert sequence
          Length = 1961

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 170  tggcggagcgccgccgccg 188
            |||||||||||||||||||
Sbjct: 1073 tggcggagcgccgccgccg 1091
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>dbj|AK108730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D02, full
            insert sequence
          Length = 1900

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 177  gcgccgccgccgccccgga 195
            |||||||||||||||||||
Sbjct: 1353 gcgccgccgccgccccgga 1335
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>emb|AJ323956.1|HSA323956 Homo sapiens genomic sequence surrounding NotI site, clone NR1-SJ6R
          Length = 664

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 176 agcgccgccgccgccccgg 194
           |||||||||||||||||||
Sbjct: 218 agcgccgccgccgccccgg 236
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>emb|AJ323951.1|HSA323951 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-SF14R
          Length = 662

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 176 agcgccgccgccgccccgg 194
           |||||||||||||||||||
Sbjct: 221 agcgccgccgccgccccgg 239
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      cgaccacgtcgacctcatc 82
               |||||||||||||||||||
Sbjct: 1790620 cgaccacgtcgacctcatc 1790638
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>emb|CT573418.2| Pan troglodytes chromosome X clone PTB-046H01 map Xq28, complete
             sequence
          Length = 161084

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    ctatgatgaacccaaagag 42
             |||||||||||||||||||
Sbjct: 15991 ctatgatgaacccaaagag 15973
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>dbj|AP000744.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691P24, complete
              sequence
          Length = 126000

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 176    agcgccgccgccgccccgg 194
              |||||||||||||||||||
Sbjct: 120932 agcgccgccgccgccccgg 120950
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>emb|CT574566.2| Pan troglodytes chromosome X clone CH251-413C05 map Xq28, complete
             sequence
          Length = 161928

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    ctatgatgaacccaaagag 42
             |||||||||||||||||||
Sbjct: 75192 ctatgatgaacccaaagag 75174
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>gb|M11911.1|HS5P67K Human cytomegalovirus 67-kDa phosphorylated protein gene, complete
            cds
          Length = 3072

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 172  gcggagcgccgccgccgcc 190
            |||||||||||||||||||
Sbjct: 2828 gcggagcgccgccgccgcc 2846
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>dbj|AP000557.2| Homo sapiens genomic DNA, chromosome 22q11.2, BCRL2 region,
             clone:KB1323B2
          Length = 150036

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 166   cggctggcggagcgccgccgccg 188
             |||| ||||||||||||||||||
Sbjct: 87577 cggcgggcggagcgccgccgccg 87555
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>dbj|AP000556.2| Homo sapiens genomic DNA, chromosome 22q11.2, BCRL2 region,
             clone:KB1172D5
          Length = 149618

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 166   cggctggcggagcgccgccgccg 188
             |||| ||||||||||||||||||
Sbjct: 67571 cggcgggcggagcgccgccgccg 67593


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,926,719
Number of Sequences: 3902068
Number of extensions: 1926719
Number of successful extensions: 296927
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 289774
Number of HSP's gapped (non-prelim): 7150
length of query: 195
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 173
effective length of database: 17,147,199,772
effective search space: 2966465560556
effective search space used: 2966465560556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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