>GAOX2_ORYSA (Q8RVF5) Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1
           protein)
          Length = 389

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)
 Frame = +1

Query: 241 DLRREPKIPAPFVWPHAEVRPTTAQELAVPVVDVGVLRN 357
           DLR EPKIP PFVWP+ + RP +A EL +PVVDVGVLR+
Sbjct: 35  DLRMEPKIPEPFVWPNGDARPASAAELDMPVVDVGVLRD 73

>GAO1D_WHEAT (O04705) Gibberellin 20 oxidase 1-D (EC 1.14.11.-) (Gibberellin|
           C-20 oxidase 1-D) (GA 20-oxidase 1-D) (Ta20ox1D)
           (TaGA20ox1-D) (Protein Wga20)
          Length = 361

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 262 IPAPFVWPHAEV-RPTTAQELAVPVVDVG 345
           IP+ F+WP  E   P  A+EL VP++D+G
Sbjct: 17  IPSQFIWPEGESPTPDAAEELHVPLIDIG 45

>GAO1B_WHEAT (O04706) Gibberellin 20 oxidase 1-B (EC 1.14.11.-) (Gibberellin|
           C-20 oxidase 1-B) (GA 20-oxidase 1-B) (Ta20ox1B)
           (TaGA20ox1-B)
          Length = 365

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 262 IPAPFVWPHAEV-RPTTAQELAVPVVDVG 345
           IP+ F+WP  E   P  A+EL VP++D+G
Sbjct: 17  IPSQFIWPEGESPTPDAAEELHVPLIDIG 45

>GAO1A_WHEAT (O04707) Gibberellin 20 oxidase 1-A (EC 1.14.11.-) (Gibberellin|
           C-20 oxidase 1-B) (GA 20-oxidase 1-A) (Ta20ox1A)
           (TaGA20ox1-A)
          Length = 365

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 262 IPAPFVWPHAE-VRPTTAQELAVPVVDVG 345
           IP+ F+WP  E   P  A+EL VP++++G
Sbjct: 17  IPSQFIWPEGESPTPDAAEELHVPLINIG 45

>HMGA2_HUMAN (P52926) High mobility group protein HMGI-C (High mobility group|
           AT-hook protein 2)
          Length = 109

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 45  GAPDRSARTIPDAPASLQRRQRGLAGRHGHQPCDSPAPPAPRSQ 176
           G P  SA+  P APA  Q+R RG   +   +P   P+P  PR +
Sbjct: 9   GQPSTSAQGQPAAPAP-QKRGRGRPRKQQQEPTGEPSPKRPRGR 51

>GAOX3_ARATH (Q39112) Gibberellin 20 oxidase 3 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 3) (GA 20-oxidase 3)
          Length = 380

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 262 IPAPFVWPHAEVRPTTAQELAVPVVDV 342
           IP  FVWP  E   T  Q L VP++D+
Sbjct: 37  IPQQFVWPDHEKPSTDVQPLQVPLIDL 63

>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10
          Length = 819

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -3

Query: 315 LRRGGAHLGVRPHERGGDLGLPPEVVHR 232
           LR G  H G R   RGGD G PP   HR
Sbjct: 698 LRGGSHHGGERGGMRGGDRGPPPPPFHR 725

>HMGA2_MOUSE (P52927) High mobility group protein HMGI-C (High mobility group|
           AT-hook protein 2)
          Length = 108

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 45  GAPDRSARTIPDAPASLQRRQRGLAGRHGHQPCDSPAPPAPRSQ 176
           G P  SA+  P AP   Q+R RG   +   +P   P+P  PR +
Sbjct: 9   GQPSTSAQGQPAAPVP-QKRGRGRPRKQQQEPTCEPSPKRPRGR 51

>BTKL_DROME (P08630) Tyrosine-protein kinase Btk29A (EC 2.7.10.2) (Dsrc28C)|
          Length = 786

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 69  TIPDAPASLQRRQRGLAGRHGHQPCDSPAPPAPRSQH 179
           TIPD     +    GLA R    PCD P PP     H
Sbjct: 480 TIPDLINYHRHNSGGLACRLKSSPCDRPVPPTAGLSH 516

>TRPA_SYMTH (Q67PJ3) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 279

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/24 (58%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = -1

Query: 158 RSRGVAGLVS-MAAGEPALATLQR 90
           RSRG  GL++ +AAG+P+LAT +R
Sbjct: 12  RSRGEKGLIAYLAAGDPSLATTRR 35

>GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 1) (GA 20-oxidase 1) (Os20ox)
          Length = 372

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 244 LRREPKIPAPFVWPHAEVRPTTA-QELAVPVVDVG 345
           L  + +IP+ F+WP  E   + A +EL V ++DVG
Sbjct: 18  LSGQTEIPSQFIWPAEESPGSVAVEELEVALIDVG 52

>CTND2_MOUSE (O35927) Catenin delta-2 (Neural plakophilin-related ARM-repeat|
           protein) (NPRAP) (Neurojungin)
          Length = 1247

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 48  APDRSARTIPDAPASLQRRQRGLAGRHGHQPCDSPAPPAP 167
           AP +       A A+ Q   +G  GR GH     PAPP P
Sbjct: 184 APSQLPARSTQARAAGQSFSQGTTGRAGHLAGSEPAPPPP 223

>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I|
          Length = 1794

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +3

Query: 45   GAPDRSA-RTIPDAP----ASLQRRQRGLAGRHGHQPCDSPAPPAPRSQ 176
            GAP   A + +P AP    A +Q +  G+   +   P  +PAPPAP SQ
Sbjct: 1437 GAPSNHAPQVVPPAPMHAVAPVQPKAPGMV-TNAPAPSSAPAPPAPVSQ 1484

>GAOX1_ARATH (Q39110) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 1) (GA 20-oxidase 1) (AtGA20ox)
          Length = 377

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 244 LRREPKIPAPFVWPHAEVRPTTAQELAVPVVDV 342
           L  +  IP  F+WP  E       EL VP++D+
Sbjct: 34  LNLQANIPNQFIWPDDEKPSINVLELDVPLIDL 66

>YAC9_MAIZE (P03936) Transposable element activator hypothetical 23 kDa protein|
           (AC 23 kDa protein)
          Length = 210

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = -2

Query: 172 ERGAGGAGESQGWCPWRPASPRWRRCSEAGASGMVLAERSG 50
           E   G  GE +    WR A  RWR      A G  +  RSG
Sbjct: 28  ETADGRMGERRAVEVWRTADRRWRMADGRTADGRAVEWRSG 68

>STAU2_BRARE (Q7ZW47) Double-stranded RNA-binding protein Staufen homolog 2|
          Length = 606

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  ASSHTSHLMVLQTAQQEPSLTRPPRCS 99
           A+ H + +  LQ  + EP   RPP+CS
Sbjct: 166 AARHNAAMKALQALKNEPIPERPPQCS 192

>GAOX2_ARATH (Q39111) Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 2) (GA 20-oxidase 2)
          Length = 378

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 244 LRREPKIPAPFVWPHAEVRPTTAQELAVPVVDV 342
           L  + +IP  F+WP  E       EL VP +D+
Sbjct: 36  LNLQSQIPNQFIWPDEEKPSIDIPELNVPFIDL 68

>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)|
          Length = 681

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 81  APASLQRRQRGLAGRHGHQPCDSPAPPAP 167
           +PA L+R     A R    P  SPAPP P
Sbjct: 262 SPAGLRRANSVQAARPAPAPVPSPAPPQP 290

>ATG22_YARLI (Q6CD56) Autophagy-related protein 22|
          Length = 589

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 63  ARTIPDAPASLQRRQRGLAGRHGHQPCDSPAPPAP 167
           A  IP    S  R+   LA  H  QPCDSP  P P
Sbjct: 30  ATYIPQLLQSYARQNAVLADDHS-QPCDSPPVPFP 63

>INA_BACTL (P23382) Immune inhibitor A precursor (EC 3.4.24.-)|
          Length = 687

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = -3

Query: 345 AHVHHWHGQL------LRRGGAHLGVRPHERGGDLGLPPE 244
           A V +W G++      +      +GV  HE G DLGLP E
Sbjct: 238 AKVPYWGGKMAAFDYTIEPEDGAVGVNAHEYGHDLGLPDE 277

>KLF13_HUMAN (Q9Y2Y9) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Transcription factor NSLP1)
           (Novel Sp1-like zin
          Length = 288

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 81  APASLQRRQRGLAGRHGHQPCDSPAPPAP 167
           APA  +RR+ G A R    PC  P PPAP
Sbjct: 77  APAPAERRE-GAAARKARTPCRLP-PPAP 103

>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)|
          Length = 1073

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   THSQLASSHTSHLMVLQTAQQEPSLTRP 87
           TH Q  +SH  H    QT QQ P L  P
Sbjct: 60  THQQSHTSHLQHAQQHQTHQQHPLLPPP 87

>LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34)|
           (5-lipoxygenase) (5-LO)
          Length = 672

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 136 WCPWRPASPRWRRCSEAGASGMVLAER 56
           WC W P +P   R   A A G+V  E+
Sbjct: 559 WCSWIPNAPPTMRAPPATAKGVVTIEQ 585


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,335,359
Number of Sequences: 219361
Number of extensions: 598098
Number of successful extensions: 2637
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2626
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)