>PSD3_TOBAC (P93768) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Nuclear antigen 21D7)
          Length = 488

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 182 DGPNPVA--VETPRRAGSHGAVGSQLRHGNGWTALVELGEI 66
           D PNPVA       +A   GA+ + L H NGW    E G+I
Sbjct: 382 DSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDI 422

>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (FAP-A)
          Length = 381

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +1

Query: 13  PGAAVPHLSFGLPCHCRPISPSSTKAVHPLPCRS*EPTAPWLPA-RRGVSTATGFGPSPC 189
           PGA  P    G P    P +P  T    P P     P AP  PA   G + A    P+P 
Sbjct: 314 PGAPAPGAP-GAPAPGAPAAPGVTAPAAPAPAAPGAPAAPGAPAPEPGQAPAVEVSPTPT 372

Query: 190 P 192
           P
Sbjct: 373 P 373

>PSD3_DAUCA (Q06364) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Nuclear antigen 21D7)
          Length = 489

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 182 DGPNPVA--VETPRRAGSHGAVGSQLRHGNGWTALVELGEI 66
           D PNPVA       +A   GA+ + + H NGW    E G+I
Sbjct: 383 DSPNPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDI 423

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = +1

Query: 1    WLTRPGAAVPHLS-------FGLPCHCRPISPSSTKAVHPLPCRS*EPTAPWLPARRGVS 159
            W  +PG  VP  +        GLP    P SP+STK+      +S   T   L    G +
Sbjct: 814  WPEQPGLVVPAPAPAAAGAPSGLP-GSGPSSPASTKSSSST--KSSSSTKSGLSGSSGYA 870

Query: 160  TATGFGPSPCPEHR 201
            ++   GP P PE R
Sbjct: 871  SSPAAGPDPAPERR 884

>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1748

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1   WLTRPGAAVPHLSFGLPCHCR--PISPSSTKAVHPLPCRS*EPTAP 132
           W  RP     H SF LP  C   P SPS   A HPLP     P  P
Sbjct: 547 WKRRPLLLDSHSSF-LPSSCLQPPASPSIAAAPHPLPPAQKPPRPP 591

>RFX2_HUMAN (P48378) DNA-binding protein RFX2|
          Length = 723

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 361 WLTIWRATTASSWAPKSIATTDDESEG 281
           WL+ W +  +SS  P S+  +D++ EG
Sbjct: 396 WLSFWNSKASSSDGPTSLPASDEDPEG 422

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = +1

Query: 1    WLTRPGAAVPHLS-------FGLPCHCRPISPSSTKAVHPLPCRS*EPTAPWLPARRGVS 159
            W  +PG  VP  +        GLP    P SP+STK+      +S   T   L    G +
Sbjct: 825  WPEQPGLVVPAPAPAAAGAPSGLP-GSGPSSPASTKSGSST--KSSSGTKSGLSGSSGYA 881

Query: 160  TATGFGPSPCPEHR 201
            ++   GP P PE R
Sbjct: 882  SSPAAGPDPAPERR 895

>SYMM_MOUSE (Q499X9) Methionyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.10) (Methionine--tRNA ligase 2) (Mitochondrial
           methionine--tRNA ligase) (MtMetRS)
          Length = 586

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +1

Query: 292 RHPSSQWIS----APTSSPWSLA--KWLATVTPSV*SKRSTSHLHW 411
           R P  +W+     A T  P+  A  +WL    P +   R +SHLHW
Sbjct: 212 REPLQRWLGNNPQAITPEPFHQAVLQWLEEELPDLSVSRRSSHLHW 257

>PVRL1_HUMAN (Q15223) Poliovirus receptor-related protein 1 precursor (Herpes|
           virus entry mediator C) (HveC) (Nectin-1) (Herpesvirus
           Ig-like receptor) (HIgR) (CD111 antigen)
          Length = 517

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 447 NPPEHGRPGRPIPMQVRCGTLGS 379
           +PPEHGR   P+P  +  G  GS
Sbjct: 341 SPPEHGRRAGPVPTAIIGGVAGS 363

>TLX1_HUMAN (P31314) T-cell leukemia homeobox protein 1 (Homeobox protein|
           Hox-11) (TCL-3 proto-oncogene)
          Length = 330

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 46  LPCHCRPISPSSTKAVHPLPCRS*EPTAPWLPARRGVSTATG 171
           +P H RP++ +     HP P  +  PT P +PA  GV+  TG
Sbjct: 134 VPAH-RPLAGA---VAHPQPLATGLPTVPSVPAMPGVNNLTG 171

>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2813

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 17  VLPCHTCHSDSPAIAVQSHRARP 85
           +LP + C +DS A+ + SH+A P
Sbjct: 573 ILPLYACSTDSAALELNSHQAAP 595

>APC_MOUSE (Q61315) Adenomatous polyposis coli protein (Protein APC) (mAPC)|
          Length = 2845

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 54   PLPSNLTELDQGRPSIAVPELRTNGS 131
            PLP+N+  + +GR  I +P LR + S
Sbjct: 2216 PLPTNMPSISRGRTMIHIPGLRNSSS 2241

>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33|
          Length = 498

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 23/71 (32%), Positives = 29/71 (40%)
 Frame = -2

Query: 224 VGGESGSYLCSGHGDGPNPVAVETPRRAGSHGAVGSQLRHGNGWTALVELGEIGRQWQGS 45
           +GG++G  L    GDG       T  + G  GA G  +  GNG       G  G    G+
Sbjct: 426 LGGKAG--LIGDGGDG-GAGGNGTGAKGGDGGAGGGAILVGNG-------GNGGNAGSGT 475

Query: 44  PNDKCGTAAPG 12
           PN   GT   G
Sbjct: 476 PNGSAGTGGAG 486

>HPAB3_PSEYM (Q8RP04) Effector protein hopAB3 (Avirulence protein hopPmaL) (Type|
           III effector hopPmaL)
          Length = 385

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 218 GESGSYLCSGHGDGPNPVA 162
           G SGSY  SGH D P PV+
Sbjct: 9   GPSGSYNYSGHTDNPEPVS 27


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,230,527
Number of Sequences: 219361
Number of extensions: 1461037
Number of successful extensions: 5128
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5127
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)