ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet114h10 |
|---|---|
| Clone Library Name | barley_pub |
>CYSKP_ARATH (P47999) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) (AtCS-B) (cpACS1) (At.OAS.7-4) Length = 392 Score = 42.7 bits (99), Expect = 2e-04 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 11/57 (19%) Frame = +2 Query: 176 VDSSPFSTLQQQRQ---------QEDPGV--LNIRDTAAHLIGRTPLVYLNKVTEGC 313 V S+ F+ +Q R + + GV LNI D AA LIG+TP+VYLN V +GC Sbjct: 42 VSSAAFTLKRQSRSDVVCKAVSIKPEAGVEGLNIADNAAQLIGKTPMVYLNNVVKGC 98
>CYSK4_ARATH (O22682) Probable cysteine synthase, chloroplast precursor (EC| 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (CS26) Length = 404 Score = 42.7 bits (99), Expect = 2e-04 Identities = 17/42 (40%), Positives = 28/42 (66%) Frame = +2 Query: 188 PFSTLQQQRQQEDPGVLNIRDTAAHLIGRTPLVYLNKVTEGC 313 P +T+ +++ + +NI + LIG TP+VYLN+VT+GC Sbjct: 81 PVTTVAEEQHIAESETVNIAEDVTQLIGSTPMVYLNRVTDGC 122
>CYSKM_ARATH (Q43725) Cysteine synthase, mitochondrial precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C) Length = 430 Score = 42.4 bits (98), Expect = 3e-04 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 179 DSSPFSTLQQQRQQEDPGVLNIRDTAAHLIGRTPLVYLNKVTEGC 313 + P + +++ P LNI D + LIG+TP+VYLN + +GC Sbjct: 92 ERDPSVVCEAVKRETGPDGLNIADNVSQLIGKTPMVYLNSIAKGC 136
>CYSK_MAIZE (P80608) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 325 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/25 (64%), Positives = 18/25 (72%) Frame = +2 Query: 239 NIRDTAAHLIGRTPLVYLNKVTEGC 313 +I LIG TPLVYLNKVT+GC Sbjct: 7 SIAKDVTELIGNTPLVYLNKVTDGC 31
>CYSK_WHEAT (P38076) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (OAS-TL A) Length = 325 Score = 36.6 bits (83), Expect = 0.016 Identities = 16/24 (66%), Positives = 17/24 (70%) Frame = +2 Query: 242 IRDTAAHLIGRTPLVYLNKVTEGC 313 I LIG TPLVYLNKVT+GC Sbjct: 9 IAKDVTELIGNTPLVYLNKVTDGC 32
>CYSKP_CAPAN (P31300) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) Length = 374 Score = 35.8 bits (81), Expect = 0.028 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEGC 313 LNI + LIG TP+VYLN + +GC Sbjct: 65 LNIAEDVTQLIGNTPMVYLNTIVKGC 90
>CYSKP_SOLTU (O81155) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) Length = 386 Score = 35.8 bits (81), Expect = 0.028 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEGC 313 LNI + LIG TP+VYLN + +GC Sbjct: 67 LNIAEDVTQLIGNTPMVYLNTIAKGC 92
>CYSK2_BRAJU (O23735) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL6) Length = 324 Score = 35.4 bits (80), Expect = 0.036 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEGC 313 + I + LIG TPLVYLN V EGC Sbjct: 5 IGIANDVTELIGNTPLVYLNSVAEGC 30
>CYSK1_ORYSA (Q9XEA6) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 321 Score = 35.4 bits (80), Expect = 0.036 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = +2 Query: 242 IRDTAAHLIGRTPLVYLNKVTEGC 313 I LIG TPLVYLN+VT+GC Sbjct: 5 IAKDVTELIGNTPLVYLNRVTDGC 28
>CYSKP_SPIOL (P32260) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) Length = 383 Score = 34.7 bits (78), Expect = 0.062 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEG 310 LNI + + LIG+TP+VYLN V++G Sbjct: 65 LNIAEDVSQLIGKTPMVYLNNVSKG 89
>CYSK2_ORYSA (Q9XEA8) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 325 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = +2 Query: 239 NIRDTAAHLIGRTPLVYLNKVTEGC 313 +I LIG TPLVYLNKV +GC Sbjct: 7 SIASDVTALIGNTPLVYLNKVVDGC 31
>CYSK1_BRAJU (O23733) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL4) Length = 322 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/24 (62%), Positives = 15/24 (62%) Frame = +2 Query: 242 IRDTAAHLIGRTPLVYLNKVTEGC 313 I LIG TPLVYLN V EGC Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGC 28
>CYSK1_ARATH (P47998) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (CS-A) (OAS-TL A) (Cys-3A) (At.OAS.5-8) Length = 322 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/24 (62%), Positives = 15/24 (62%) Frame = +2 Query: 242 IRDTAAHLIGRTPLVYLNKVTEGC 313 I LIG TPLVYLN V EGC Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGC 28
>CYSK_SOLTU (O81154) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (CS-A) (OAS-TL A) Length = 325 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEGC 313 + I LIG TPLVYLN V +GC Sbjct: 6 IGIAKDVTELIGNTPLVYLNNVVDGC 31
>CYSK_CITLA (Q43317) Cysteine synthase (EC 2.5.1.47) (Beta-pyrazolylalanine| synthase) (Beta-PA/CSase) (EC 2.5.1.51) (L-mimosine synthase) (EC 2.5.1.52) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 325 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +2 Query: 242 IRDTAAHLIGRTPLVYLNKVTEGC 313 I LIG TPLVYLN+V +GC Sbjct: 8 IAKDVTELIGNTPLVYLNRVVDGC 31
>CYSK_SPIOL (Q00834) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (OAS-TL A) Length = 325 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +2 Query: 242 IRDTAAHLIGRTPLVYLNKVTEGC 313 I LIG+TPLVYLN V +GC Sbjct: 8 IAKDVTELIGKTPLVYLNTVADGC 31
>CYSK_SYNY3 (P73410) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) Length = 312 Score = 30.8 bits (68), Expect = 0.89 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKV--TEGCG 316 + I LIGRTPLV LN++ EGCG Sbjct: 1 MKIASNITELIGRTPLVRLNRIPLLEGCG 29
>CYSK_MYCTU (P0A534) Cysteine synthase A (EC 2.5.1.47) (O-acetylserine| sulfhydrylase A) (O-acetylserine (Thiol)-lyase A) (CSase A) Length = 310 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEG 310 ++I + LIGRTPLV L +VT+G Sbjct: 1 MSIAEDITQLIGRTPLVRLRRVTDG 25
>CYSK_MYCBO (P0A535) Cysteine synthase A (EC 2.5.1.47) (O-acetylserine| sulfhydrylase A) (O-acetylserine (Thiol)-lyase A) (CSase A) Length = 310 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEG 310 ++I + LIGRTPLV L +VT+G Sbjct: 1 MSIAEDITQLIGRTPLVRLRRVTDG 25
>CYSK_MYCLE (O32978) Cysteine synthase A (EC 2.5.1.47) (O-acetylserine| sulfhydrylase A) (O-acetylserine (Thiol)-lyase A) (CSase A) Length = 310 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 236 LNIRDTAAHLIGRTPLVYLNKVTEG 310 ++I + L+G TPLV L +VTEG Sbjct: 1 MSIAEDVTQLVGNTPLVRLRRVTEG 25
>PO3F3_RAT (Q63262) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 497 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +1 Query: 241 HQGHRRPPHRADAAGVPEQGDGG 309 H H PPH A G P G GG Sbjct: 275 HHAHPHPPHPHHAQGPPHHGGGG 297
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +1 Query: 241 HQGHRRPPHRADAAGVPEQGDGG 309 H H PPH A G P G GG Sbjct: 273 HHAHPHPPHPHHAQGPPHHGGGG 295
>CAP2_MOUSE (Q9CYT6) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 476 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 233 VLNIRDTAAHLIGRTPLVYLNKVTEGC 313 V+N +D ++GR P + +NK TEGC Sbjct: 393 VINSKDIQIQVMGRVPTISINK-TEGC 418
>CAP2_RAT (P52481) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 233 VLNIRDTAAHLIGRTPLVYLNKVTEGC 313 V+N +D ++GR P + +NK TEGC Sbjct: 394 VINSKDIQIQVMGRVPTISINK-TEGC 419
>SC6A8_MOUSE (Q8VBW1) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 640 Score = 27.7 bits (60), Expect = 7.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 54 LRCWMVVYVCQWCGV 10 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>CAP2_HUMAN (P40123) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 233 VLNIRDTAAHLIGRTPLVYLNKVTEGC 313 V+N +D ++GR P + +NK TEGC Sbjct: 394 VINSQDIQIQVMGRVPTISINK-TEGC 419
>SC6A8_RAT (P28570) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (CHOT1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 54 LRCWMVVYVCQWCGV 10 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>SC6A8_RABIT (P31661) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 54 LRCWMVVYVCQWCGV 10 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>SC6A8_HUMAN (P48029) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 54 LRCWMVVYVCQWCGV 10 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>SC6A8_BOVIN (O18875) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 54 LRCWMVVYVCQWCGV 10 L CW++VY C W GV Sbjct: 240 LTCWVLVYFCVWKGV 254
>RL3_ONYPE (P60455) 50S ribosomal protein L3| Length = 157 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 6 PSHHTTGTHRRPSSSGELEPQTKGERWRG 92 P H + HRRP S G ++ + KG++ G Sbjct: 73 PESHGSRYHRRPGSMGPIKGKLKGKKLPG 101
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +1 Query: 223 RPRCAQHQGHRRPPHRADAAGVPEQGDGG 309 RP+ A + R PP RA AAG P GG Sbjct: 50 RPKPAPPERPRPPPPRARAAGQPAARSGG 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,473,233 Number of Sequences: 219361 Number of extensions: 386718 Number of successful extensions: 1675 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1669 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
