>SYR_SULTO (Q971X1) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 623

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
 Frame = +2

Query: 53  GDPNPEFLSSSYKLLGRAFRLASVSLAFPIYCLRNLKIPTGQGSEEEQGEK--DMDALSS 226
           G+PNP       + +G  + + ++ +      +  LK      +EEE  +K   +D L S
Sbjct: 171 GEPNPPRDEKIDQWIGVIYAITNILIE-----INQLKKELSSSNEEEYRQKISKLDELIS 225

Query: 227 MLDKAKDKVKSNPDVMEKVNSVLDKVKNHPEVMEKV 334
           +  K ++K    P++ +K+   + K++N  E ++ +
Sbjct: 226 LAGKHREKY---PEIFDKLADEISKIENIEEKIQNI 258

>ADRL_DROME (Q9VCY8) ADIPOR-like receptor CG5315|
          Length = 444

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 330 FSITSGWFLTLSRTELTFSITSGLLFTLSFALSSIEL 220
           +SI  GWF  +SR  L + I  GLL+ L   L ++ +
Sbjct: 352 YSIMEGWFSQMSRASLGWLILMGLLYILGALLYALRV 388

>RAD50_METJA (Q58718) DNA double-strand break repair rad50 ATPase|
          Length = 1005

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/43 (32%), Positives = 29/43 (67%)
 Frame = +2

Query: 206 DMDALSSMLDKAKDKVKSNPDVMEKVNSVLDKVKNHPEVMEKV 334
           D+D L ++L+K KD+++     +E +  +L+++KN  E +EK+
Sbjct: 342 DIDNLDTLLNKIKDEIER----VETIKDLLEELKNLNEEIEKI 380

>RPOD_CLOAB (P33656) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 378

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = +2

Query: 152 RNLKIPTGQGSEEEQGEKDMDALSSMLDKAKDKVKSNPDVMEKVNSVLDKVKNHPEVMEK 331
           +N K  + + S +E+ EK M  + +++DK K   KS     +++   L +V   PE +EK
Sbjct: 14  KNSKKVSKEESAKEKNEK-MKIVKNLIDKGK---KSGSLTYKEIMDELQEVDLGPEQIEK 69

Query: 332 VAEVL 346
           + EVL
Sbjct: 70  IYEVL 74

>Y086_CLOTE (Q899T2) UPF0182 protein CTC_00086|
          Length = 887

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 339 SATFSITSGWFLTLSRTELTFS--ITSGLLFTLSFALSSIEL 220
           S +F I   WF  LS T +      T G LFTLSFAL  I +
Sbjct: 24  STSFIIDFQWFQELSYTSVFLKEFFTIGKLFTLSFALIFISI 65

>MAD1_DEBHA (Q6BSY1) Spindle assembly checkpoint component MAD1 (Mitotic arrest|
           deficient protein 1)
          Length = 669

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/84 (23%), Positives = 42/84 (50%)
 Frame = +2

Query: 68  EFLSSSYKLLGRAFRLASVSLAFPIYCLRNLKIPTGQGSEEEQGEKDMDALSSMLDKAKD 247
           E+L+S +K   R        L F I             S+++  EK    ++S+ D+ K 
Sbjct: 122 EYLNSDFKKFCRDNNQVKSDLEFHI------------NSKDQMNEK----ITSLQDENKS 165

Query: 248 KVKSNPDVMEKVNSVLDKVKNHPE 319
             K+N +++EK+NS+ +++ ++ +
Sbjct: 166 LCKTNDELIEKLNSISEQLVSNTQ 189

>Y524_MYCPN (P75254) Hypothetical UPF0134 protein MPN524 (G12_orf168)|
          Length = 168

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +2

Query: 176 QGSEEEQGE------KDMDALSSMLDKAKDKVKSNPDVMEKVNSVLDKVKNHPEVME 328
           Q  ++ QGE      + +  +S  LDK + K+    + M+K+   +DK++N  + ME
Sbjct: 96  QIEQKAQGETLKLILQTLQKMSDRLDKMEVKMDKMEEKMDKMEGKIDKIENRMDKME 152

>TMC1_MOUSE (Q8R4P5) Transmembrane cochlear-expressed protein 1 (Beethoven|
           protein) (Deafness protein)
          Length = 757

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 152 RNLKIPTGQGSEEEQGEKDMDALSSMLDKAKD---KVKSNPDVMEKVNSVLDKVK 307
           R  ++  G   EEE  E++++ L ++LD+ +     VK  P  MEK   VL + K
Sbjct: 64  RRRRLRRGAEEEEEIDEEELERLKALLDENRQMIATVKCKPWKMEKKIEVLKEAK 118

>CDC27_YEAST (P38042) Anaphase-promoting complex subunit CDC27 (Cell division|
           control protein 27) (Anaphase-promoting complex subunit
           3)
          Length = 758

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 203 KDMDALSSMLDKAKDKVKSNPDVMEKVNSVLDKVKNHPEVMEKVAEVLHL 352
           KDM+  S++L    DKVKS+       N ++D + N PE    +  +L L
Sbjct: 507 KDMEIFSTLLWHLHDKVKSS----NLANGLMDTMPNKPETWCCIGNLLSL 552

>KRF4_COLLI (Q9PSV3) Feather keratin Cos2-3 (F-ker)|
          Length = 100

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 302 PCREPN*PFPSHQGCFSPCLSPCRASNLKHPCPSLLVLL 186
           PC +P  P P    C  PC+  C++SN+     S++V+L
Sbjct: 8   PC-QPCGPTPLANSCNEPCVRQCQSSNVVIEPSSVVVIL 45

>K0553_HUMAN (Q9UKJ3) Protein KIAA0553|
          Length = 1089

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
 Frame = +2

Query: 152 RNLKIPTGQGSEEEQGEKDMDALSS--MLDKAKD-KVKSNPDVMEKV----NSVLDKVKN 310
           +N  I TG+GSE +   +D +++++  +L+K +  KV+  P V E+V    N    K+K+
Sbjct: 653 QNSNIGTGRGSEGDCSPEDKNSVTAKLLLEKIQSRKVERKPSVSEEVQATPNKAGPKLKD 712

Query: 311 HPE 319
            P+
Sbjct: 713 PPQ 715

>OPTN_XENLA (Q5M7B7) Optineurin|
          Length = 532

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = +2

Query: 110 RLASVSLAFPIYCLRNLKIPTGQGSEEEQGEKDMDALSSMLDKAKDKVKSNPDVMEKVNS 289
           RLA +      +C + ++  T Q SE+ Q E     +SS +D  K+KVKS    +++ N 
Sbjct: 226 RLAELEKQTSEFCDKGVQ--TEQESEQSQSEV---IISSEVDILKEKVKSLNKELQETND 280

Query: 290 VLDKVKNHPEVMEK 331
            L++ K     +++
Sbjct: 281 KLNEAKQFKNSLQE 294

>SYV_NITEU (Q82X51) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
            (ValRS)
          Length = 918

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +2

Query: 158  LKIPTGQGSEEEQGEKDMDALSSMLDKAKDKVKSNPDVMEK-----VNSVLDKVKNHPEV 322
            LKI     +E E+  K+M  L+  + KA+ K+  NPD +++     V    +++      
Sbjct: 848  LKIEVDVAAERERLNKEMQRLTLEIGKARTKL-DNPDFLQRAPEKVVLQEKERLATFSAT 906

Query: 323  MEKVAEVLH 349
            +EK+ + LH
Sbjct: 907  LEKLDQQLH 915

>Y415_TREPA (O83430) Hypothetical protein TP0415|
          Length = 177

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 143 KWGKLRRQKQAEKHDLIICMRSSRILGWDLRVGPGL*R 30
           K GK+ R++  E   L + +   RI+GW +  GPG+ R
Sbjct: 102 KEGKVFRRQGVEGGTLRVRLEKCRIVGWGMYGGPGVVR 139

>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein|
            pam/highwire/rpm-1)
          Length = 5233

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 239  PCRASNLKHPCPSLLVLLHFLDQLESSDFADNKW 138
            P  +S   HP P L+  + +  Q E SDF  N W
Sbjct: 1897 PMLSSTDAHPYPVLVEQMIYRTQQEKSDFLSNSW 1930


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,771,661
Number of Sequences: 219361
Number of extensions: 1054739
Number of successful extensions: 3992
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3981
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)