ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet114e02 |
|---|---|
| Clone Library Name | barley_pub |
>EXT1_DROME (Q9V730) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Protein| tout-velu) Length = 760 Score = 33.9 bits (76), Expect = 0.21 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +2 Query: 299 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 W ++N + + ++ YE + Q + FCL P G S R +EA+ GCIPV Sbjct: 301 WRELQDNRCDEDNREYDRYDYETLLQNSTFCLVPRGRRLGSFRFLEALQAGCIPV 355
>EXT1_MOUSE (P97464) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 32.0 bits (71), Expect = 0.79 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +2 Query: 299 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 W+ K++ +T++ Y +M A FCL P G S R +EA+ C+PV Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPV 358
>EXT1_HUMAN (Q16394) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT1) (Multiple exostoses protein Length = 746 Score = 32.0 bits (71), Expect = 0.79 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +2 Query: 299 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 W+ K++ +T++ Y +M A FCL P G S R +EA+ C+PV Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPV 358
>EXT1_CRIGR (Q9JK82) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Heparan sulfate| copolymerase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 32.0 bits (71), Expect = 0.79 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +2 Query: 299 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 W+ K++ +T++ Y +M A FCL P G S R +EA+ C+PV Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPV 358
>NFI_METKA (Q8X260) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)| (Deoxyribonuclease V) (DNase V) Length = 229 Score = 31.6 bits (70), Expect = 1.0 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -2 Query: 403 PQRAQTENGALHVLVVGGWVVRRDVEQRVVLEVLPHRCTGASCIVTTLRIIR 248 P R +H V G++VR D E R V+ HRC + TLR++R Sbjct: 145 PSRIGDTTPLVHRGEVVGYLVRTDAEARPVVVSPGHRCNLEDAVRWTLRLVR 196
>APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding family A member| 1 (Neuron-specific X11 protein) (Neuronal Munc18-1-interacting protein 1) (Mint-1) (Adapter protein X11alpha) Length = 839 Score = 30.0 bits (66), Expect = 3.0 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -2 Query: 451 APEHHRLHEAGAPWRPPQRAQTENG 377 APE HR H A P PPQ + E G Sbjct: 49 APEDHRAHPAPPPPPPPQEEEEERG 73
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 24.6 bits (52), Expect(2) = 3.6 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +1 Query: 274 CKRRPCIGVGELQEQPSVRH 333 C+ PC G+ Q+QP H Sbjct: 555 CRSSPCANGGQCQDQPGAFH 574 Score = 23.5 bits (49), Expect(2) = 3.6 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +2 Query: 365 DMQRAIFCLCPLGW 406 D+ A FCLCP G+ Sbjct: 606 DLPGAFFCLCPSGF 619
>KLOT_HUMAN (Q9UEF7) Klotho precursor (EC 3.2.1.31) [Contains: Klotho peptide]| Length = 1012 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Frame = +2 Query: 224 FRGLFYD--------TANDPEGGYYARGARASVWENFKNNPL 325 F+G F D A EGG+ G AS+W+ F ++PL Sbjct: 57 FQGTFPDGFLWAVGSAAYQTEGGWQQHGKGASIWDTFTHHPL 98
>KLOT_MACFA (Q8WP17) Klotho precursor (EC 3.2.1.31) [Contains: Klotho peptide]| Length = 1014 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Frame = +2 Query: 224 FRGLFYD--------TANDPEGGYYARGARASVWENFKNNPL 325 F+G F D A EGG+ G AS+W+ F ++PL Sbjct: 59 FQGTFPDGFLWAVGSAAYQTEGGWQQHGKGASIWDTFTHHPL 100
>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1580 Score = 29.6 bits (65), Expect = 3.9 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = +2 Query: 71 LLRRATLVQTFGQKDHVCLKEGSINIPPYAPPQKMKTHLVPPETPRSIFVYFRGLFYDTA 250 ++RR +++ + +KD V + S ++P A P++ KT PP PR+ L D + Sbjct: 572 IVRRFSIMDFYSEKDIV--RGSSNSLPSQAFPERRKTLRPPPPRPRTPTPISSHLLVDQS 629 Query: 251 NDPEGGYYARGAR 289 P R +R Sbjct: 630 PKPVPTLVVRPSR 642
>RTXE_DROME (Q9NBX4) Probable RNA-directed DNA polymerase from transposon| X-element (EC 2.7.7.49) (Reverse transcriptase) Length = 908 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 176 KTHLVPPETPRSIFVYFRGLFYDTANDPEGGYYARGARASVWENFKNNPLFDIST 340 +TH ETP+ G TANDP GG GA + + + PL I+T Sbjct: 37 ETHCKGAETPKLF-----GFVAYTANDPSGGNAKGGAAILIKNSLAHFPLTPIAT 86
>EXT1B_BRARE (Q5IGR7) Exostosin-1b (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1b) (Multiple exostoses protein 1 homolog b) Length = 741 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 356 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 Y E + + FCL P G S R +EA+ C+PV Sbjct: 319 YREMLHNSTFCLVPRGRRLGSFRFLEALQAACVPV 353
>EXT1A_BRARE (Q5IGR8) Exostosin-1a (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1a) (Multiple exostoses protein 1 homolog a) Length = 730 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 356 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 Y E + + FCL P G S R +EA+ C+PV Sbjct: 308 YKEMLHNSTFCLVPRGRRLGSFRFLEALQAACVPV 342
>YMF40_MARPO (P38478) Hypothetical 57.7 kDa protein in 18S rRNA intron 1 (ORF| 502) Length = 502 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 74 LRRATLVQTFGQ----KDHVCLKEGSINIPPYAPPQKMKTHLVPPETPRSIF 217 L A +++ FG +DH + +N P P ++M L PP PR +F Sbjct: 442 LNTAKVIKRFGVDLIFRDHTNEIKHKLNFPRSLPNKRMNFALSPPSDPRVLF 493
>PTK1_YEAST (P36002) Serine/threonine-protein kinase PTK1/STK1 (EC 2.7.11.1)| Length = 649 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%) Frame = +2 Query: 134 GSINIPPYAPPQKM--------KTHLVPPETPRSIFVYFRGLFYDT 247 G I PPYAPP+ M T L P PR++ Y G+ T Sbjct: 370 GMIGSPPYAPPEVMFYDSKKHYDTELQQPYDPRALDCYGLGIILMT 415
>EXT1C_BRARE (Q5IGR6) Exostosin-1c (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1c) (Multiple exostoses protein 1 homolog c) Length = 737 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = +2 Query: 299 WENFKNNPLFDISTDHPPTYYED------MQRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 WE K D DH YE + + FCL P G S R +E++ CIPV Sbjct: 296 WEKHK-----DARCDHDNQEYERFDYQELLHNSTFCLVPRGRRLGSFRFLESLQAACIPV 350
>NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 kDa nuclear| cap-binding protein) (NCBP 80 kDa subunit) (CBP80) Length = 790 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +2 Query: 143 NIPPYAPPQKMKTHLVPPETPRSIFVYFRGLFYDTANDPEG 265 N+PP+ PP + + P PR IF F D +DPEG Sbjct: 267 NLPPFTPPPHTEDSVYP--MPRVIFRMF-----DYTDDPEG 300
>BGLA_CLOTM (P26208) Beta-glucosidase A (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 448 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Frame = +2 Query: 260 EGGYYARGARASVWENFKNNP-------LFDISTDHPPTYYEDMQ 373 EG Y G S+W+ F + P D++ DH Y ED++ Sbjct: 22 EGAYNEDGKGESIWDRFSHTPGNIADGHTGDVACDHYHRYEEDIK 66
>LPH_RABIT (P09849) Lactase-phlorizin hydrolase precursor| (Lactase-glycosylceramidase) [Includes: Lactase (EC 3.2.1.108); Phlorizin hydrolase (EC 3.2.1.62)] Length = 1926 Score = 28.5 bits (62), Expect = 8.7 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 25/107 (23%) Frame = +2 Query: 77 RRATLVQTFGQKDHVCLKEGSINIPPYAP--PQKMKTHLVPPETPRSIFVYF-------- 226 + A L+ + +K+ K +PP + P K + +P E P V + Sbjct: 831 KSAFLLTSIIEKNGFLTKAVKQPLPPNSAHLPSKTRASALPSEVPSKAKVVWEKFSNQTK 890 Query: 227 --RGLFY-------------DTANDPEGGYYARGARASVWENFKNNP 322 R LFY +A EG + A G S+W+NF + P Sbjct: 891 FERDLFYHGTFRDDFLWGVSSSAYQIEGAWDADGKGPSIWDNFTHTP 937
>EXT1_CAEEL (O01704) Multiple exostoses homolog 1 (Related to mammalian RIB| protein 1) Length = 378 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 356 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 460 Y E + + FCL P G S R +E + GC+PV Sbjct: 258 YDELLANSTFCLVPRGRRLGSFRFLETLRSGCVPV 292
>ATC_PLAFK (Q08853) Calcium-transporting ATPase (EC 3.6.3.8) (Calcium pump)| Length = 1228 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +2 Query: 209 SIFVYFRGLFYDTANDPEGGYY--ARGARASVWENFKNNPLFDISTDH 346 SIFVY+ + D+ +Y + + W NF+ N ++D+S DH Sbjct: 1062 SIFVYWFLFYPDSDMHTLINFYQLSHYNQCKAWNNFRVNKVYDMSEDH 1109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,701,770 Number of Sequences: 219361 Number of extensions: 1809044 Number of successful extensions: 4792 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4789 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
