ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet114e01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY835406.1| Hordeum vulgare Hs1 (Hs1) gene, complete cds Length = 7483 Score = 856 bits (432), Expect = 0.0 Identities = 432/432 (100%) Strand = Plus / Plus Query: 1 acccgaccctagagtgaccagaacacgagcaggaagcaagcaaccaagtttctgcttgga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3806 acccgaccctagagtgaccagaacacgagcaggaagcaagcaaccaagtttctgcttgga 3865 Query: 61 gcaaggagcggtagaggtttcgaacgagagattagttaacccgagagtttgttgagctgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3866 gcaaggagcggtagaggtttcgaacgagagattagttaacccgagagtttgttgagctgg 3925 Query: 121 aaccgtgctgaaagaaatggcgacgaccaagttgtccccgctctcgcccgtgcggcccga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3926 aaccgtgctgaaagaaatggcgacgaccaagttgtccccgctctcgcccgtgcggcccga 3985 Query: 181 cgacaagcggcgcgcgccggcggcgtcggtgttgctgaaggtgcaggacagctcggcggc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3986 cgacaagcggcgcgcgccggcggcgtcggtgttgctgaaggtgcaggacagctcggcggc 4045 Query: 241 tgaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4046 tgaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtg 4105 Query: 301 ctgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4106 ctgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcac 4165 Query: 361 cttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4166 cttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagct 4225 Query: 421 cgcgcggcggct 432 |||||||||||| Sbjct: 4226 cgcgcggcggct 4237
>gb|AF307333.1| Hordeum vulgare putative nematode-resistance protein (Hs1) mRNA, complete cds Length = 1404 Score = 587 bits (296), Expect = e-164 Identities = 296/296 (100%) Strand = Plus / Plus Query: 137 atggcgacgaccaagttgtccccgctctcgcccgtgcggcccgacgacaagcggcgcgcg 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atggcgacgaccaagttgtccccgctctcgcccgtgcggcccgacgacaagcggcgcgcg 60 Query: 197 ccggcggcgtcggtgttgctgaaggtgcaggacagctcggcggctgaggcgtacgagcag 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ccggcggcgtcggtgttgctgaaggtgcaggacagctcggcggctgaggcgtacgagcag 120 Query: 257 tacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgctgcccgggctggacc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgctgcccgggctggacc 180 Query: 317 gacgagggcctggtcaagcccgcgctgcaggcgcttgagatcaccttccgcttcgtgtcc 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gacgagggcctggtcaagcccgcgctgcaggcgcttgagatcaccttccgcttcgtgtcc 240 Query: 377 gtcgcgctctccgacccgcggggctacgccagccgccgcgagctcgcgcggcggct 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gtcgcgctctccgacccgcggggctacgccagccgccgcgagctcgcgcggcggct 296
>ref|NM_190662.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1425 Score = 236 bits (119), Expect = 5e-59 Identities = 173/191 (90%) Strand = Plus / Plus Query: 242 gaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgc 301 |||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||| Sbjct: 124 gaggagtacgagcagtacctgcggcttccggagctcgcaaggctgtggaaggataggtgc 183 Query: 302 tgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcacc 361 || |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 184 tgtccggagtgggccgacgagggcctcgtcaagccggcgctgcaggcgctggagatcacc 243 Query: 362 ttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 421 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 ttccgcttcatctccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 303 Query: 422 gcgcggcggct 432 ||||||||||| Sbjct: 304 gcgcggcggct 314
>gb|AY224522.1| Oryza sativa (japonica cultivar-group) isolate 20568 putative nematode-resistance protein mRNA, complete cds Length = 1425 Score = 236 bits (119), Expect = 5e-59 Identities = 173/191 (90%) Strand = Plus / Plus Query: 242 gaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgc 301 |||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||| Sbjct: 124 gaggagtacgagcagtacctgcggcttccggagctcgcaaggctgtggaaggataggtgc 183 Query: 302 tgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcacc 361 || |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 184 tgtccggagtgggccgacgagggcctcgtcaagccggcgctgcaggcgctggagatcacc 243 Query: 362 ttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 421 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 ttccgcttcatctccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 303 Query: 422 gcgcggcggct 432 ||||||||||| Sbjct: 304 gcgcggcggct 314
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 236 bits (119), Expect = 5e-59 Identities = 173/191 (90%) Strand = Plus / Minus Query: 242 gaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgc 301 |||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||| Sbjct: 36937605 gaggagtacgagcagtacctgcggcttccggagctcgcaaggctgtggaaggataggtgc 36937546 Query: 302 tgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcacc 361 || |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 36937545 tgtccggagtgggccgacgagggcctcgtcaagccggcgctgcaggcgctggagatcacc 36937486 Query: 362 ttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 421 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36937485 ttccgcttcatctccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 36937426 Query: 422 gcgcggcggct 432 ||||||||||| Sbjct: 36937425 gcgcggcggct 36937415
>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1402_H07 Length = 140620 Score = 236 bits (119), Expect = 5e-59 Identities = 173/191 (90%) Strand = Plus / Minus Query: 242 gaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgc 301 |||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||| Sbjct: 27909 gaggagtacgagcagtacctgcggcttccggagctcgcaaggctgtggaaggataggtgc 27850 Query: 302 tgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcacc 361 || |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 27849 tgtccggagtgggccgacgagggcctcgtcaagccggcgctgcaggcgctggagatcacc 27790 Query: 362 ttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 421 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27789 ttccgcttcatctccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 27730 Query: 422 gcgcggcggct 432 ||||||||||| Sbjct: 27729 gcgcggcggct 27719
>dbj|AK099776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095E24, full insert sequence Length = 1873 Score = 236 bits (119), Expect = 5e-59 Identities = 173/191 (90%) Strand = Plus / Plus Query: 242 gaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgc 301 |||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||| Sbjct: 241 gaggagtacgagcagtacctgcggcttccggagctcgcaaggctgtggaaggataggtgc 300 Query: 302 tgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcacc 361 || |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 301 tgtccggagtgggccgacgagggcctcgtcaagccggcgctgcaggcgctggagatcacc 360 Query: 362 ttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 421 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttccgcttcatctccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 420 Query: 422 gcgcggcggct 432 ||||||||||| Sbjct: 421 gcgcggcggct 431
>dbj|AK106740.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B03, full insert sequence Length = 2126 Score = 236 bits (119), Expect = 5e-59 Identities = 173/191 (90%) Strand = Plus / Minus Query: 242 gaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgc 301 |||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||| Sbjct: 1348 gaggagtacgagcagtacctgcggcttccggagctcgcaaggctgtggaaggataggtgc 1289 Query: 302 tgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcacc 361 || |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 1288 tgtccggagtgggccgacgagggcctcgtcaagccggcgctgcaggcgctggagatcacc 1229 Query: 362 ttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 421 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1228 ttccgcttcatctccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 1169 Query: 422 gcgcggcggct 432 ||||||||||| Sbjct: 1168 gcgcggcggct 1158
>dbj|AK060734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A10, full insert sequence Length = 1950 Score = 236 bits (119), Expect = 5e-59 Identities = 173/191 (90%) Strand = Plus / Plus Query: 242 gaggcgtacgagcagtacctgcggctgccggagctgtcgaggctgtggaagggcgcgtgc 301 |||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||| Sbjct: 577 gaggagtacgagcagtacctgcggcttccggagctcgcaaggctgtggaaggataggtgc 636 Query: 302 tgcccgggctggaccgacgagggcctggtcaagcccgcgctgcaggcgcttgagatcacc 361 || |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 637 tgtccggagtgggccgacgagggcctcgtcaagccggcgctgcaggcgctggagatcacc 696 Query: 362 ttccgcttcgtgtccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 421 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 697 ttccgcttcatctccgtcgcgctctccgacccgcggggctacgccagccgccgcgagctc 756 Query: 422 gcgcggcggct 432 ||||||||||| Sbjct: 757 gcgcggcggct 767
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 195 cgccggcggcgtcggtgttgctgaag 220 |||||||||||||||||| ||||||| Sbjct: 2242302 cgccggcggcgtcggtgtcgctgaag 2242277
>emb|X84374.3|SCARD1GN Saccharothrix mutabilis subsp. capreolus A201A biosynthetic gene cluster Length = 33676 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 187 gcggcgcgcgccggcggcgtcggtgt 212 ||||||| |||||||||||||||||| Sbjct: 22971 gcggcgcccgccggcggcgtcggtgt 22946
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 caagcggcgcgcgccggcggcg 205 |||||||||||||||||||||| Sbjct: 284913 caagcggcgcgcgccggcggcg 284892
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 caagcggcgcgcgccggcggcg 205 |||||||||||||||||||||| Sbjct: 8630 caagcggcgcgcgccggcggcg 8609
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 184 caagcggcgcgcgccggcggcg 205 |||||||||||||||||||||| Sbjct: 318820 caagcggcgcgcgccggcggcg 318841
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 caagcggcgcgcgccggcggcgtcg 208 ||||||| ||||||||||||||||| Sbjct: 387727 caagcggtgcgcgccggcggcgtcg 387751
>gb|AY034092.1| Micrococcus sp. 28 plasmid pSD10, complete sequence Length = 50709 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 gcgccggcggcgtcggtgttg 214 ||||||||||||||||||||| Sbjct: 49888 gcgccggcggcgtcggtgttg 49868
>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 7/11 Length = 349943 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 gaccaagttgtccccgctctc 165 ||||||||||||||||||||| Sbjct: 93022 gaccaagttgtccccgctctc 93042
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 ggcgcgcgccggcggcgtcgg 209 ||||||||||||||||||||| Sbjct: 1163110 ggcgcgcgccggcggcgtcgg 1163130
>ref|NG_004593.1| Rattus norvegicus Kiaa1949 pseudogene (Kiaa1949) on chromosome 20 Length = 10748 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 gaccaagttgtccccgctctc 165 ||||||||||||||||||||| Sbjct: 6813 gaccaagttgtccccgctctc 6833
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 gccagccgccgcgagctcgcg 424 ||||||||||||||||||||| Sbjct: 3537302 gccagccgccgcgagctcgcg 3537282 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 gcggcgcgcgccggcggcgt 206 |||||||||||||||||||| Sbjct: 2266915 gcggcgcgcgccggcggcgt 2266934
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgacgacaagcggcgcgcgc 197 |||||||||||||||||||| Sbjct: 103566 cgacgacaagcggcgcgcgc 103585
>ref|XM_472668.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tgtccgtcgcgctctccgac 391 |||||||||||||||||||| Sbjct: 392 tgtccgtcgcgctctccgac 411
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 ccgccgcgagctcgcgcggcggct 432 |||||||||| ||||||||||||| Sbjct: 524312 ccgccgcgagatcgcgcggcggct 524289
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagccgccgcgagctcgcgcggcggc 431 |||| |||||||||| |||||||||||| Sbjct: 491146 gccaaccgccgcgagatcgcgcggcggc 491119
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagccgccgcgagctcgcgcggcggc 431 |||| |||||||||| |||||||||||| Sbjct: 3334657 gccaaccgccgcgagatcgcgcggcggc 3334630
>ref|XM_546657.2| PREDICTED: Canis familiaris similar to lethal giant larvae homolog 1 (LOC489538), mRNA Length = 3489 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 gtcgcgctctccgacccgcggggc 400 |||||||||| ||||||||||||| Sbjct: 204 gtcgcgctctgcgacccgcggggc 227
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 188 cggcgcgcgccggcggcgtcggtgttgc 215 |||||||||||||| |||||||||||| Sbjct: 4475950 cggcgcgcgccggccacgtcggtgttgc 4475977
>gb|AE008908.1| Salmonella typhimurium LT2, section 212 of 220 of the complete genome Length = 20456 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 agcagtacctgcggctgccg 271 |||||||||||||||||||| Sbjct: 16199 agcagtacctgcggctgccg 16180
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ggcgcgtgctgcccgggctg 312 |||||||||||||||||||| Sbjct: 267906 ggcgcgtgctgcccgggctg 267925
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagccgccgcgagctcgcgcggcggc 431 |||| |||||||||| |||||||||||| Sbjct: 3065945 gccaaccgccgcgagatcgcgcggcggc 3065918
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 tgtccgtcgcgctctccgac 391 |||||||||||||||||||| Sbjct: 46325 tgtccgtcgcgctctccgac 46306
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 agcagtacctgcggctgccg 271 |||||||||||||||||||| Sbjct: 174750 agcagtacctgcggctgccg 174731
>gb|AE012249.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 157 of 460 of the complete genome Length = 12813 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 cgccggcggcgtcggtgttgctga 218 |||||||||||||||||| ||||| Sbjct: 5026 cgccggcggcgtcggtgtagctga 5049
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ggcgcgcgccggcggcgtcg 208 |||||||||||||||||||| Sbjct: 3466134 ggcgcgcgccggcggcgtcg 3466115
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 cgccggcggcgtcggtgttgctga 218 |||||||||||||||||| ||||| Sbjct: 3305817 cgccggcggcgtcggtgtagctga 3305794
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 tgtccgtcgcgctctccgac 391 |||||||||||||||||||| Sbjct: 22442570 tgtccgtcgcgctctccgac 22442551
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 agcagtacctgcggctgccg 271 |||||||||||||||||||| Sbjct: 4420650 agcagtacctgcggctgccg 4420631
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gccggcggcgtcggtgttgc 215 |||||||||||||||||||| Sbjct: 1553820 gccggcggcgtcggtgttgc 1553801
>dbj|AK110238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-G01, full insert sequence Length = 2891 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 tgtccgtcgcgctctccgac 391 |||||||||||||||||||| Sbjct: 1084 tgtccgtcgcgctctccgac 1065
>dbj|AK107687.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-B05, full insert sequence Length = 1441 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 tgtccgtcgcgctctccgac 391 |||||||||||||||||||| Sbjct: 989 tgtccgtcgcgctctccgac 970
>dbj|AK067842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123C22, full insert sequence Length = 1896 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tgtccgtcgcgctctccgac 391 |||||||||||||||||||| Sbjct: 783 tgtccgtcgcgctctccgac 802
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 agcagtacctgcggctgccg 271 |||||||||||||||||||| Sbjct: 4629639 agcagtacctgcggctgccg 4629620
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 agcagtacctgcggctgccg 271 |||||||||||||||||||| Sbjct: 4605173 agcagtacctgcggctgccg 4605154
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gcggctgccggagctgtcga 281 |||||||||||||||||||| Sbjct: 3260709 gcggctgccggagctgtcga 3260728
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 gccgccgcgagctcgcgcggcggc 431 |||||||||||| ||||||||||| Sbjct: 88499 gccgccgcgagcccgcgcggcggc 88476
>gb|AC174718.1| Gasterosteus aculeatus clone VMRC26-161C14, complete sequence Length = 166000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gctgccggagctgtcgaggc 284 |||||||||||||||||||| Sbjct: 43753 gctgccggagctgtcgaggc 43772 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,618,692 Number of Sequences: 3902068 Number of extensions: 2618692 Number of successful extensions: 58421 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55645 Number of HSP's gapped (non-prelim): 2769 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
