ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet114a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1921 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 254 cgggcgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 297 cgggcgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 346 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 223 cggcggtggtgcagctgatgaagcagcagggcatc 257 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 445 ccgtcgggaacgaggtgttc 464
>ref|XM_507002.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1353_F08.18 mRNA Length = 1922 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 254 cgggcgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 298 cgggcgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 347 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 224 cggcggtggtgcagctgatgaagcagcagggcatc 258 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 446 ccgtcgggaacgaggtgttc 465
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 254 cgggcgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 32588164 cgggcgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 32588115 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 32588238 cggcggtggtgcagctgatgaagcagcagggcatc 32588204 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 32588016 ccgtcgggaacgaggtgttc 32587997
>gb|U72255.1|OSU72255 Oryza sativa beta-1,3-glucanase precursor (Gns9) gene, complete cds Length = 2187 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 254 cgggcgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 1258 cgggcgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 1307 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 1184 cggcggtggtgcagctgatgaagcagcagggcatc 1218 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 1406 ccgtcgggaacgaggtgttc 1425
>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1611_C08 Length = 135386 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 254 cgggcgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 15535 cgggcgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 15486 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 15609 cggcggtggtgcagctgatgaagcagcagggcatc 15575 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 15387 ccgtcgggaacgaggtgttc 15368
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1353_F08 Length = 101988 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 254 cgggcgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 85137 cgggcgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 85088 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 85211 cggcggtggtgcagctgatgaagcagcagggcatc 85177 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 84989 ccgtcgggaacgaggtgttc 84970
>dbj|AK058571.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E08, full insert sequence Length = 1921 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 254 cgggcgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 297 cgggcgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 346 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 223 cggcggtggtgcagctgatgaagcagcagggcatc 257 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 445 ccgtcgggaacgaggtgttc 464
>dbj|AK102185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086N13, full insert sequence Length = 1922 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 258 cgctggccaacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 302 cgctggccaacaccggcatcaaggtggtggtcgcgctgcccaacga 347 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 180 cggcggtggtgcagctgctgaagcagcacggcatc 214 ||||||||||||||||| |||||||||| |||||| Sbjct: 224 cggcggtggtgcagctgatgaagcagcagggcatc 258 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 446 ccgtcgggaacgaggtgttc 465
>gb|S82315.1| PRm 6b=1,3-beta-glucanase {clone CHEM 9} [Zea mays=maize, cv. INRA 258, mercuric chloride-treated, leaves, mRNA Partial, 1243 nt] Length = 1243 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 361 tgggtgcagagcaacgtgcaggcgttcccg 390
>gb|AY106411.1| Zea mays PCO106344 mRNA sequence Length = 1217 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 266 aacaccggcatcaaggttggggtgtcgctgcccaacga 303 ||||||||||||||||| | |||| ||||||||||||| Sbjct: 284 aacaccggcatcaaggtggtggtggcgctgcccaacga 321 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 cggcggtggtgcagctgctgaagcagca 207 ||||||| ||||||||||| |||||||| Sbjct: 198 cggcggttgtgcagctgctcaagcagca 225
>gb|DQ147119.1| Zea diploperennis isolate d8 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1178 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 435 tgggtgcagagcaacgtgcaggcgttcccg 464
>gb|DQ147118.1| Zea diploperennis isolate d7 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147117.1| Zea diploperennis isolate d6 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147116.1| Zea diploperennis isolate d5 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147115.1| Zea diploperennis isolate d4 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147114.1| Zea diploperennis isolate d3 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147113.1| Zea diploperennis isolate d2 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1189 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 446 tgggtgcagagcaacgtgcaggcgttcccg 475
>gb|DQ147112.1| Zea diploperennis isolate d1 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147111.1| Zea mays subsp. parviglumis isolate p15 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 439 tgggtgcagagcaacgtgcaggcgttcccg 468
>gb|DQ147110.1| Zea mays subsp. parviglumis isolate p14 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147109.1| Zea mays subsp. parviglumis isolate p13 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 438 tgggtgcagagcaacgtgcaggcgttcccg 467
>gb|DQ147108.1| Zea mays subsp. parviglumis isolate p12 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 442 tgggtgcagagcaacgtgcaggcgttcccg 471
>gb|DQ147107.1| Zea mays subsp. parviglumis isolate p11 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1186 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 443 tgggtgcagagcaacgtgcaggcgttcccg 472
>gb|DQ147106.1| Zea mays subsp. parviglumis isolate p9b truncated pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1120 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 442 tgggtgcagagcaacgtgcaggcgttcccg 471
>gb|DQ147105.1| Zea mays subsp. parviglumis isolate p9 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 442 tgggtgcagagcaacgtgcaggcgttcccg 471
>gb|DQ147104.1| Zea mays subsp. parviglumis isolate p8 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 439 tgggtgcagagcaacgtgcaggcgttcccg 468
>gb|DQ147103.1| Zea mays subsp. parviglumis isolate p6 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 439 tgggtgcagagcaacgtgcaggcgttcccg 468
>gb|DQ147102.1| Zea mays subsp. parviglumis isolate p5 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 442 tgggtgcagagcaacgtgcaggcgttcccg 471
>gb|DQ147101.1| Zea mays subsp. parviglumis isolate p4 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 442 tgggtgcagagcaacgtgcaggcgttcccg 471
>gb|DQ147100.1| Zea mays subsp. parviglumis isolate p3 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1186 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 443 tgggtgcagagcaacgtgcaggcgttcccg 472
>gb|DQ147099.1| Zea mays subsp. parviglumis isolate p2 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 439 tgggtgcagagcaacgtgcaggcgttcccg 468
>gb|DQ147098.1| Zea mays subsp. parviglumis isolate p1 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgtacccg 376 ||||||||||||||||||||||||| |||| Sbjct: 442 tgggtgcagagcaacgtgcaggcgttcccg 471
>ref|XM_478552.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1785 Score = 50.1 bits (25), Expect = 0.006 Identities = 66/77 (85%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 207 acggcatcacgatggtgagactgttcaacgcagacgccggtgg-gctccgggcgctggcc 265 ||||||||||||||||||| | ||| |||| ||| |||| || ||| |||||||||| Sbjct: 217 acggcatcacgatggtgaggatcttcgacgccgac-ccggcggtgctgagggcgctggcg 275 Query: 266 aacaccggcatcaaggt 282 ||||||||||||||||| Sbjct: 276 aacaccggcatcaaggt 292 Score = 46.1 bits (23), Expect = 0.099 Identities = 50/59 (84%) Strand = Plus / Plus Query: 371 tacccgggcacgtggatcgacagcgtgtccgtcgggaacgaggtgttccaccaggcgcc 429 ||||||| |||| |||| || ||||| |||| ||||||||||||||| | |||||||| Sbjct: 384 tacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcc 442
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.006 Identities = 66/77 (85%), Gaps = 2/77 (2%) Strand = Plus / Minus Query: 207 acggcatcacgatggtgagactgttcaacgcagacgccggtgg-gctccgggcgctggcc 265 ||||||||||||||||||| | ||| |||| ||| |||| || ||| |||||||||| Sbjct: 21098411 acggcatcacgatggtgaggatcttcgacgccgac-ccggcggtgctgagggcgctggcg 21098353 Query: 266 aacaccggcatcaaggt 282 ||||||||||||||||| Sbjct: 21098352 aacaccggcatcaaggt 21098336 Score = 46.1 bits (23), Expect = 0.099 Identities = 50/59 (84%) Strand = Plus / Minus Query: 371 tacccgggcacgtggatcgacagcgtgtccgtcgggaacgaggtgttccaccaggcgcc 429 ||||||| |||| |||| || ||||| |||| ||||||||||||||| | |||||||| Sbjct: 21098244 tacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcc 21098186 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 120 cagaggccggcgatgtgggggtgtgctacggga 152 ||||||| ||||| ||||| ||||||||||||| Sbjct: 21193505 cagaggctggcgaggtgggcgtgtgctacggga 21193473 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcgttgt 84 ||||||||||||||||||| |||| Sbjct: 25834365 gctgctgctcctcctcctccttgt 25834342 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 21186464 ccgtcgggaacgaggtgttc 21186445
>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0696F12 Length = 165227 Score = 50.1 bits (25), Expect = 0.006 Identities = 66/77 (85%), Gaps = 2/77 (2%) Strand = Plus / Minus Query: 207 acggcatcacgatggtgagactgttcaacgcagacgccggtgg-gctccgggcgctggcc 265 ||||||||||||||||||| | ||| |||| ||| |||| || ||| |||||||||| Sbjct: 19772 acggcatcacgatggtgaggatcttcgacgccgac-ccggcggtgctgagggcgctggcg 19714 Query: 266 aacaccggcatcaaggt 282 ||||||||||||||||| Sbjct: 19713 aacaccggcatcaaggt 19697 Score = 46.1 bits (23), Expect = 0.099 Identities = 50/59 (84%) Strand = Plus / Minus Query: 371 tacccgggcacgtggatcgacagcgtgtccgtcgggaacgaggtgttccaccaggcgcc 429 ||||||| |||| |||| || ||||| |||| ||||||||||||||| | |||||||| Sbjct: 19605 tacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcc 19547 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 120 cagaggccggcgatgtgggggtgtgctacggga 152 ||||||| ||||| ||||| ||||||||||||| Sbjct: 114866 cagaggctggcgaggtgggcgtgtgctacggga 114834 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 107825 ccgtcgggaacgaggtgttc 107806
>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_A12 Length = 152269 Score = 50.1 bits (25), Expect = 0.006 Identities = 66/77 (85%), Gaps = 2/77 (2%) Strand = Plus / Minus Query: 207 acggcatcacgatggtgagactgttcaacgcagacgccggtgg-gctccgggcgctggcc 265 ||||||||||||||||||| | ||| |||| ||| |||| || ||| |||||||||| Sbjct: 141710 acggcatcacgatggtgaggatcttcgacgccgac-ccggcggtgctgagggcgctggcg 141652 Query: 266 aacaccggcatcaaggt 282 ||||||||||||||||| Sbjct: 141651 aacaccggcatcaaggt 141635 Score = 46.1 bits (23), Expect = 0.099 Identities = 50/59 (84%) Strand = Plus / Minus Query: 371 tacccgggcacgtggatcgacagcgtgtccgtcgggaacgaggtgttccaccaggcgcc 429 ||||||| |||| |||| || ||||| |||| ||||||||||||||| | |||||||| Sbjct: 141543 tacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcc 141485
>dbj|AK102329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090M12, full insert sequence Length = 1982 Score = 50.1 bits (25), Expect = 0.006 Identities = 66/77 (85%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 207 acggcatcacgatggtgagactgttcaacgcagacgccggtgg-gctccgggcgctggcc 265 ||||||||||||||||||| | ||| |||| ||| |||| || ||| |||||||||| Sbjct: 217 acggcatcacgatggtgaggatcttcgacgccgac-ccggcggtgctgagggcgctggcg 275 Query: 266 aacaccggcatcaaggt 282 ||||||||||||||||| Sbjct: 276 aacaccggcatcaaggt 292 Score = 46.1 bits (23), Expect = 0.099 Identities = 50/59 (84%) Strand = Plus / Plus Query: 371 tacccgggcacgtggatcgacagcgtgtccgtcgggaacgaggtgttccaccaggcgcc 429 ||||||| |||| |||| || ||||| |||| ||||||||||||||| | |||||||| Sbjct: 384 tacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcc 442
>gb|M95407.1|MZE13BGLCN Wuglu; Zea mays; 1292 base-pairs Length = 1265 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 347 tgggtgcagagcaacgtgcaggcgt 371 ||||||||||||||||||||||||| Sbjct: 366 tgggtgcagagcaacgtgcaggcgt 390
>gb|AY394382.1| Drosophila melanogaster strain ZH21 locus FBgn0031990-like gene, partial sequence Length = 519 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 173 cagccgccggcggtggtgcagctgct 198 |||| ||||||||||||||||||||| Sbjct: 475 cagcggccggcggtggtgcagctgct 450
>gb|AY394381.1| Drosophila melanogaster strain ZH18 locus FBgn0031990-like gene, partial sequence Length = 519 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 173 cagccgccggcggtggtgcagctgct 198 |||| ||||||||||||||||||||| Sbjct: 475 cagcggccggcggtggtgcagctgct 450
>gb|AY394380.1| Drosophila melanogaster strain Zh12 locus FBgn0031990-like gene, partial sequence Length = 504 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 173 cagccgccggcggtggtgcagctgct 198 |||| ||||||||||||||||||||| Sbjct: 460 cagcggccggcggtggtgcagctgct 435
>emb|CR956364.13| Pig DNA sequence from clone PigI-52G3 on chromosome 7, complete sequence Length = 105198 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 334 gtacgcggtgcggtgggtgcagagca 359 |||| ||||||||||||||||||||| Sbjct: 11651 gtactcggtgcggtgggtgcagagca 11626
>ref|XM_508146.1| PREDICTED: Pan troglodytes similar to Protein-tyrosine phosphatase epsilon precursor (R-PTP-epsilon) (LOC450865), mRNA Length = 4458 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 1335 gctgctgctcctcctcctcgt 1355
>ref|NM_006504.3| Homo sapiens protein tyrosine phosphatase, receptor type, E (PTPRE), transcript variant 1, mRNA Length = 5376 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 441 gctgctgctcctcctcctcgt 461
>ref|XM_478570.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1752 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 120 cagaggccggcgatgtgggggtgtgctacggga 152 ||||||| ||||| ||||| ||||||||||||| Sbjct: 137 cagaggctggcgaggtgggcgtgtgctacggga 169
>ref|XM_424139.1| PREDICTED: Gallus gallus similar to oxidative stress responsive 1 (LOC426498), mRNA Length = 954 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 265 gctgctgctcctcctcctcgt 245
>ref|XM_955090.1| Neurospora crassa OR74A hypothetical protein (NCU09866.1) partial mRNA Length = 5802 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 cagccgccggcggtggtgcag 193 ||||||||||||||||||||| Sbjct: 3457 cagccgccggcggtggtgcag 3437
>ref|XM_330787.1| Neurospora crassa OR74A hypothetical protein (NCU09866.1) partial mRNA Length = 5802 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 cagccgccggcggtggtgcag 193 ||||||||||||||||||||| Sbjct: 3457 cagccgccggcggtggtgcag 3437
>gb|AC161213.3| Mus musculus chromosome 3, clone RP23-77D22, complete sequence Length = 196596 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 68531 gctgctgctcctcctcctcgt 68511
>gb|DQ334150.1| Drosophila miranda CG32239 gene, partial cds Length = 570 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 agctgctgctcctcctcctcg 80 ||||||||||||||||||||| Sbjct: 338 agctgctgctcctcctcctcg 318
>emb|AL390236.21| Human DNA sequence from clone RP11-380J17 on chromosome 10 Contains the 3' end of the PTPRE gene for protein tyrosine phosphatase receptor type E and the 3' end of the MKI67 gene for antigen identified by monoclonal antibody Ki-67, complete sequence Length = 123057 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 62134 gctgctgctcctcctcctcgt 62154
>emb|X54134.1|HSPTPE Human HPTP epsilon mRNA for protein tyrosine phosphatase epsilon Length = 2160 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 213 gctgctgctcctcctcctcgt 233
>gb|AC162938.5| Mus musculus BAC clone RP23-104D6 from chromosome 9, complete sequence Length = 204657 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 ccctaagctgctgctcctcct 75 ||||||||||||||||||||| Sbjct: 56736 ccctaagctgctgctcctcct 56716
>gb|BC050062.1| Homo sapiens protein tyrosine phosphatase, receptor type, E, mRNA (cDNA clone MGC:48280 IMAGE:5274802), complete cds Length = 3709 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 520 gctgctgctcctcctcctcgt 540
>dbj|AK056111.1| Homo sapiens cDNA FLJ31549 fis, clone NT2RI2001030, highly similar to PROTEIN-TYROSINE PHOSPHATASE EPSILON PRECURSOR (EC 3.1.3.48) Length = 2304 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 2005 gctgctgctcctcctcctcgt 2025
>gb|AF406557.1|AF406557 Homo sapiens PTPRE (PTPRE) mRNA, partial cds Length = 679 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 376 gctgctgctcctcctcctcgt 396
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 cggtgggctccgggcgctggc 264 ||||||||||||||||||||| Sbjct: 15265419 cggtgggctccgggcgctggc 15265399 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tgcggtgggtgcagagcaac 361 |||||||||||||||||||| Sbjct: 4951238 tgcggtgggtgcagagcaac 4951257
>gb|AC087384.13| Homo sapiens chromosome 8, clone RP11-689G24, complete sequence Length = 110281 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 acgggatgatgggtgacaacc 167 ||||||||||||||||||||| Sbjct: 27999 acgggatgatgggtgacaacc 28019
>dbj|D25236.1|RICAD79A Oryza sativa AD79 mRNA for 1-3,1-4-beta-glucanase, partial cds Length = 465 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 cgctggccaacaccggcatcaaggt 282 ||||||| ||||||||||||||||| Sbjct: 205 cgctggcgaacaccggcatcaaggt 229
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 acgaggtgttccaccaggcgc 428 ||||||||||||||||||||| Sbjct: 183746 acgaggtgttccaccaggcgc 183766
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 tggccaacaccggcatcaagg 281 ||||||||||||||||||||| Sbjct: 1690110 tggccaacaccggcatcaagg 1690130
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 cggtgggctccgggcgctggc 264 ||||||||||||||||||||| Sbjct: 159395 cggtgggctccgggcgctggc 159375
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 cggtgggctccgggcgctggc 264 ||||||||||||||||||||| Sbjct: 44608 cggtgggctccgggcgctggc 44588
>dbj|AP006179.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB848B6, complete sequence Length = 64773 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 acgggatgatgggtgacaacc 167 ||||||||||||||||||||| Sbjct: 58867 acgggatgatgggtgacaacc 58887
>gb|BC031078.1| Homo sapiens cDNA clone IMAGE:5295028, containing frame-shift errors Length = 2633 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcgt 81 ||||||||||||||||||||| Sbjct: 443 gctgctgctcctcctcctcgt 463
>ref|XM_480946.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1734 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 356 ccgtcgggaacgaggtgttc 375
>ref|XM_480595.1| Oryza sativa (japonica cultivar-group), mRNA Length = 570 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gctgctcctcctcctcgttg 83 |||||||||||||||||||| Sbjct: 410 gctgctcctcctcctcgttg 429
>ref|XM_480091.1| Oryza sativa (japonica cultivar-group), mRNA Length = 474 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 327 gctgctgctcctcctcctcg 308
>ref|XM_472401.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 389 ccgtcgggaacgaggtgttc 408
>ref|XM_479209.1| Oryza sativa (japonica cultivar-group), mRNA Length = 513 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcgttgt 84 ||||||||||||||||||| |||| Sbjct: 481 gctgctgctcctcctcctccttgt 458
>ref|NM_194322.1| Homo sapiens otoferlin (OTOF), transcript variant 3, mRNA Length = 5124 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 3998 gctgctgctcctcctcctcg 4017
>ref|XM_478568.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 623 ccgtcgggaacgaggtgttc 642
>ref|XM_478569.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2381 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 872 ccgtcgggaacgaggtgttc 891
>ref|NM_004802.2| Homo sapiens otoferlin (OTOF), transcript variant 2, mRNA Length = 4970 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 3844 gctgctgctcctcctcctcg 3863
>ref|NM_194248.1| Homo sapiens otoferlin (OTOF), transcript variant 1, mRNA Length = 7172 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 6046 gctgctgctcctcctcctcg 6065
>ref|XM_844665.1| PREDICTED: Canis familiaris similar to otoferlin isoform b, transcript variant 2 (LOC607961), mRNA Length = 5994 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 5919 gctgctgctcctcctcctcg 5938
>ref|XM_854558.1| PREDICTED: Canis familiaris similar to otoferlin isoform b, transcript variant 3 (LOC607961), mRNA Length = 3693 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 3618 gctgctgctcctcctcctcg 3637
>emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chromosome 6, complete sequence Length = 118731 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 6864 gctgctgctcctcctcctcg 6883
>ref|XM_749215.1| Aspergillus fumigatus Af293 7alpha-cephem-methoxylase P8 chain (Afu3g13140) partial mRNA Length = 1065 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 gtggtgcagctgctgaagcagcac 208 |||| ||||||||||||||||||| Sbjct: 487 gtggagcagctgctgaagcagcac 510
>ref|XM_505238.1| Yarrowia lipolytica CLIB122, YALI0F10175g predicted mRNA Length = 723 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 445 gctgctgctcctcctcctcg 426
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctaagctgctgctcctcctc 76 |||||||||||||||||||| Sbjct: 135069 ctaagctgctgctcctcctc 135088
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 115543 ccgtcgggaacgaggtgttc 115562
>emb|AJ851802.1| Gallus gallus mRNA for hypothetical protein, clone 34k10 Length = 2762 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 121 gctgctgctcctcctcctcg 102
>gb|AC008014.5| Homo sapiens 12 BAC RPCI11-66E20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167939 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gccatggctgacccatcagc 446 |||||||||||||||||||| Sbjct: 56753 gccatggctgacccatcagc 56772
>emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 in linkage group 3, complete sequence Length = 193659 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cggtgcactgtcactcacct 107 |||||||||||||||||||| Sbjct: 110505 cggtgcactgtcactcacct 110486
>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 313470 agctgctgctcctcctcctc 313451
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 ctgccacagccgccggcggtggtg 190 ||||| |||||||||||||||||| Sbjct: 1844413 ctgccccagccgccggcggtggtg 1844436
>dbj|AB169681.1| Macaca fascicularis brain cDNA, clone: QccE-17330, similar to human fucosidase, alpha-L- 1, tissue (FUCA1), mRNA, RefSeq: NM_000147.2 Length = 2069 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 81 gctgctgctcctcctcctcg 100
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 1317201 gctgctgctcctcctcctcg 1317182
>dbj|AK029123.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732494K14 product:weakly similar to CDNA FLJ30201 FIS, CLONE BRACE2001477, WEAKLY SIMILAR TO HUNTINGTIN ASSOCIATED PROTEIN 1 [Homo sapiens], full insert sequence Length = 4053 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 1284 agctgctgctcctcctcctc 1265
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctaagctgctgctcctcctc 76 |||||||||||||||||||| Sbjct: 23244877 ctaagctgctgctcctcctc 23244896 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 20384910 ccgtcgggaacgaggtgttc 20384929
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 8831370 ccgtcgggaacgaggtgttc 8831389 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gctgctcctcctcctcgttg 83 |||||||||||||||||||| Sbjct: 6100300 gctgctcctcctcctcgttg 6100319 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 2688243 gctgctgctcctcctcctcg 2688224
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ctgctcctcctcctcgttgt 84 |||||||||||||||||||| Sbjct: 22613921 ctgctcctcctcctcgttgt 22613940 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 cggcggtggtgcagctgctgaagcagca 207 |||||| ||||| ||||||||||||||| Sbjct: 7232718 cggcggcggtgctgctgctgaagcagca 7232691
>gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, complete sequence Length = 63849 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 43659 gctgctgctcctcctcctcg 43640
>gb|AC010136.8| Homo sapiens BAC clone RP11-129D2 from 2, complete sequence Length = 118522 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 12148 agctgctgctcctcctcctc 12129
>gb|AF183186.1|AF183186 Homo sapiens brain otoferlin short isoform (OTOF) mRNA, complete cds Length = 5124 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 3998 gctgctgctcctcctcctcg 4017
>gb|AF183185.1|AF183185 Homo sapiens brain otoferlin long isoform (OTOF) mRNA, complete cds Length = 7172 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 6046 gctgctgctcctcctcctcg 6065
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 109119 ccgtcgggaacgaggtgttc 109138
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1033_B09 Length = 120648 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 15013 ccgtcgggaacgaggtgttc 15032
>dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0035K09 Length = 124866 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ctgctcctcctcctcgttgt 84 |||||||||||||||||||| Sbjct: 97873 ctgctcctcctcctcgttgt 97892
>dbj|AB125169.1| Macaca fascicularis FUCA1 mRNA for fucosidase, alpha-L-1, tissue, complete cds Length = 2068 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 80 gctgctgctcctcctcctcg 99
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 cggcggtggtgcagctgctgaagcagca 207 |||||| ||||| ||||||||||||||| Sbjct: 110129 cggcggcggtgctgctgctgaagcagca 110102
>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1012G11 Length = 167168 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tgcggtgggtgcagagcaac 361 |||||||||||||||||||| Sbjct: 133770 tgcggtgggtgcagagcaac 133789
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 cggcggtggtgcagctgctgaagcagca 207 |||||| ||||| ||||||||||||||| Sbjct: 67722 cggcggcggtgctgctgctgaagcagca 67695
>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047H05 Length = 187273 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ctgctcctcctcctcgttgt 84 |||||||||||||||||||| Sbjct: 79330 ctgctcctcctcctcgttgt 79349
>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470H09 Length = 141257 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 66524 gctgctgctcctcctcctcg 66505
>dbj|AB087997.1| Halocynthia roretzi HrMAPK mRNA for mitogen-activated protein kinase, complete cds Length = 2458 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 tggtgcagctgctgaagcag 205 |||||||||||||||||||| Sbjct: 1656 tggtgcagctgctgaagcag 1675
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0486F07 Length = 154926 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gctgctcctcctcctcgttg 83 |||||||||||||||||||| Sbjct: 56317 gctgctcctcctcctcgttg 56336
>dbj|AK121151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078I08, full insert sequence Length = 1981 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 531 ccgtcgggaacgaggtgttc 550
>ref|XM_553727.1| Anopheles gambiae str. PEST ENSANGP00000025431 (ENSANGG00000022878), partial mRNA Length = 663 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tggtgcagctgctgaagcag 205 |||||||||||||||||||| Sbjct: 420 tggtgcagctgctgaagcag 401
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcgttgt 84 ||||||||||||||||||| |||| Sbjct: 151527 gctgctgctcctcctcctccttgt 151504
>dbj|AK110902.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B03, full insert sequence Length = 1598 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 765 ccgtcgggaacgaggtgttc 784
>ref|NM_209795.1| Eremothecium gossypii ADR346Wp (ADR346W), mRNA Length = 594 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 538 gctgctgctcctcctcctcg 519
>dbj|AK071932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013086D06, full insert sequence Length = 1279 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 cggcggtggtgcagctgctgaagcagca 207 |||||| ||||| ||||||||||||||| Sbjct: 153 cggcggcggtgctgctgctgaagcagca 126
>dbj|AK067528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107E22, full insert sequence Length = 1239 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 623 ccgtcgggaacgaggtgttc 642
>dbj|AK066237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058G09, full insert sequence Length = 2382 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccgtcgggaacgaggtgttc 418 |||||||||||||||||||| Sbjct: 872 ccgtcgggaacgaggtgttc 891
>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_F05 Length = 132708 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcgttgt 84 ||||||||||||||||||| |||| Sbjct: 4813 gctgctgctcctcctcctccttgt 4790
>gb|AF107403.1|AF107403 Homo sapiens otoferlin (OTOF) mRNA, complete cds Length = 4970 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 3844 gctgctgctcctcctcctcg 3863
>gb|AF079368.1|AF079368 Drosophila virilis male-specific lethal-2 (msl-2) gene, complete cds Length = 2397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 1263 agctgctgctcctcctcctc 1282
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence Length = 121337 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctaagctgctgctcctcctc 76 |||||||||||||||||||| Sbjct: 83030 ctaagctgctgctcctcctc 83049
>emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on chromosome 16, complete sequence Length = 200242 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 54002 agctgctgctcctcctcctc 54021
>gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, complete sequence Length = 172271 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 33918 agctgctgctcctcctcctc 33899
>gb|AC131670.5| Mus musculus BAC clone RP23-307I19 from 5, complete sequence Length = 197080 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 51306 agctgctgctcctcctcctc 51287
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctgctgctcctcctcctcg 80 |||||||||||||||||||| Sbjct: 1379553 gctgctgctcctcctcctcg 1379534
>emb|AL157756.3|CNS01RG4 Human chromosome 14 DNA sequence BAC C-2184C24 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 127544 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 caaggttggggtgtcgctgc 296 |||||||||||||||||||| Sbjct: 86533 caaggttggggtgtcgctgc 86514
>gb|M96939.1|BLYGLCNHV Hordeum vulgare glucan endo-1,3-beta-glucosidase (isoenzyme V) mRNA, complete cds Length = 1230 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 140 gtgtgctacgggatgatgggtgacaacctgcc 171 ||||||||||| ||| |||| ||||||||||| Sbjct: 82 gtgtgctacggaatggtgggcgacaacctgcc 113
>emb|AL807760.6| Mouse DNA sequence from clone RP23-456B8 on chromosome X, complete sequence Length = 130514 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agctgctgctcctcctcctc 79 |||||||||||||||||||| Sbjct: 43327 agctgctgctcctcctcctc 43308 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,749,876 Number of Sequences: 3902068 Number of extensions: 3749876 Number of successful extensions: 91572 Number of sequences better than 10.0: 127 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90507 Number of HSP's gapped (non-prelim): 1059 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
