>ref|XM_478758.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score =  165 bits (83), Expect = 2e-37
 Identities = 102/107 (95%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 396 ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 455
           ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 267 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 326

                                                          
Query: 456 cc-tactatgagcagggagttctcggccatggtcgccgcagcagcca 501
           || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccctactatgagcagggagttctcggccatggtcgccgcagcagcca 373



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 292 gagttcagggacatccacgcgctgagcccaccgc 325
           ||||||||||||||||||||||||||||| ||||
Sbjct: 163 gagttcagggacatccacgcgctgagcccgccgc 196

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  165 bits (83), Expect = 2e-37
 Identities = 102/107 (95%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                            
Query: 396      ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 455
                ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 22836947 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 22836888

                                                               
Query: 456      -cctactatgagcagggagttctcggccatggtcgccgcagcagcca 501
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22836887 ccctactatgagcagggagttctcggccatggtcgccgcagcagcca 22836841



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 292      gagttcagggacatccacgcgctgagcccaccgc 325
                ||||||||||||||||||||||||||||| ||||
Sbjct: 22837051 gagttcagggacatccacgcgctgagcccgccgc 22837018



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 178      cacatgttgagtggacaaacggcggttagt 207
                ||||||||||||| ||||||||||| ||||
Sbjct: 22837216 cacatgttgagtgaacaaacggcggctagt 22837187

>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score =  165 bits (83), Expect = 2e-37
 Identities = 102/107 (95%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                         
Query: 396   ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 455
             ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 30214 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 30155

                                                            
Query: 456   -cctactatgagcagggagttctcggccatggtcgccgcagcagcca 501
              ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30154 ccctactatgagcagggagttctcggccatggtcgccgcagcagcca 30108



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 292   gagttcagggacatccacgcgctgagcccaccgc 325
             ||||||||||||||||||||||||||||| ||||
Sbjct: 30318 gagttcagggacatccacgcgctgagcccgccgc 30285



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 178   cacatgttgagtggacaaacggcggttagt 207
             ||||||||||||| ||||||||||| ||||
Sbjct: 30483 cacatgttgagtgaacaaacggcggctagt 30454

>dbj|AK120160.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030P03, full
           insert sequence
          Length = 1528

 Score =  165 bits (83), Expect = 2e-37
 Identities = 102/107 (95%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 396 ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 455
           ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 415 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 474

                                                          
Query: 456 cc-tactatgagcagggagttctcggccatggtcgccgcagcagcca 501
           || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccctactatgagcagggagttctcggccatggtcgccgcagcagcca 521



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 292 gagttcagggacatccacgcgctgagcccaccgc 325
           ||||||||||||||||||||||||||||| ||||
Sbjct: 311 gagttcagggacatccacgcgctgagcccgccgc 344



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 178 cacatgttgagtggacaaacggcggttagt 207
           ||||||||||||| ||||||||||| ||||
Sbjct: 146 cacatgttgagtgaacaaacggcggctagt 175

>ref|XM_470042.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1287

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 462 atgagcagggagttctcggccatggtcgccgc 493
           |||||| |||||||| ||||||||||||||||
Sbjct: 370 atgagccgggagttcacggccatggtcgccgc 401

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 462      atgagcagggagttctcggccatggtcgccgc 493
                |||||| |||||||| ||||||||||||||||
Sbjct: 33488479 atgagccgggagttcacggccatggtcgccgc 33488448

>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence, complete
             sequence
          Length = 41693

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 462   atgagcagggagttctcggccatggtcgccgc 493
             |||||| |||||||| ||||||||||||||||
Sbjct: 17668 atgagccgggagttcacggccatggtcgccgc 17637

>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence,
            complete sequence
          Length = 154555

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 462  atgagcagggagttctcggccatggtcgccgc 493
            |||||| |||||||| ||||||||||||||||
Sbjct: 9670 atgagccgggagttcacggccatggtcgccgc 9701

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 462      atgagcagggagttctcggccatggtcgccgc 493
                |||||| |||||||| ||||||||||||||||
Sbjct: 33578951 atgagccgggagttcacggccatggtcgccgc 33578920

>dbj|AK109389.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F02, full
           insert sequence
          Length = 1234

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 462 atgagcagggagttctcggccatggtcgccgc 493
           |||||| |||||||| ||||||||||||||||
Sbjct: 369 atgagccgggagttcacggccatggtcgccgc 400

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 343    cgccggagccggccgggcagc 363
              |||||||||||||||||||||
Sbjct: 409580 cgccggagccggccgggcagc 409600

>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 360    cagcagggactcgtgggggtc 380
              |||||||||||||||||||||
Sbjct: 752846 cagcagggactcgtgggggtc 752866

>gb|AF024666.2| Corynebacterium striatum strain M82B R-plasmid pTP10, complete sequence
          Length = 51409

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    accggcaccacagaccacacc 30
             |||||||||||||||||||||
Sbjct: 33157 accggcaccacagaccacacc 33137

>gb|AC017007.9| Homo sapiens BAC clone RP11-119H12 from 4, complete sequence
          Length = 182805

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 54   ctccagcttcagctgagctcc 74
            |||||||||||||||||||||
Sbjct: 6053 ctccagcttcagctgagctcc 6033

>gb|L04961.1|MUSXISTA Mouse nuclear-localized inactive X-specific transcript (Xist) mRNA
          Length = 14739

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ctactatgagcagggagttc 476
             ||||||||||||||||||||
Sbjct: 12611 ctactatgagcagggagttc 12592

>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence
          Length = 164920

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gctcctccagcttcagctga 69
             ||||||||||||||||||||
Sbjct: 53370 gctcctccagcttcagctga 53389

>ref|NR_001463.2| Mus musculus inactive X specific transcripts (Xist) on chromosome X
          Length = 17919

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ctactatgagcagggagttc 476
             ||||||||||||||||||||
Sbjct: 12649 ctactatgagcagggagttc 12630

>emb|AL353804.22| Human DNA sequence from clone RP13-216E22 on chromosome Xq13.1-21.1
            Note the TSIX gene (see AmJHumGenet 69, 951) is known to
            overlap the XIST locus however this transcript has not
            been submitted to the databases and therefore it is not
            possible at this stage to annotate the locus, complete
            sequence
          Length = 167668

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  ctactatgagcagggagttc 476
            ||||||||||||||||||||
Sbjct: 9406 ctactatgagcagggagttc 9425

>emb|BX648323.1|HSM808471 Homo sapiens mRNA; cDNA DKFZp686K10163 (from clone DKFZp686K10163)
          Length = 5106

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  ctactatgagcagggagttc 476
            ||||||||||||||||||||
Sbjct: 4533 ctactatgagcagggagttc 4514

>emb|CR749383.1| Homo sapiens mRNA; cDNA DKFZp779P0129 (from clone DKFZp779P0129)
          Length = 4890

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  ctactatgagcagggagttc 476
            ||||||||||||||||||||
Sbjct: 2207 ctactatgagcagggagttc 2188

>emb|CR596835.1| full-length cDNA clone CS0DF020YG22 of Fetal brain of Homo sapiens
            (human)
          Length = 2353

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  ctactatgagcagggagttc 476
            ||||||||||||||||||||
Sbjct: 1668 ctactatgagcagggagttc 1649

>gb|M97168.1|HUMXIST Homo sapiens X (inactive)-specific transcript (XIST) complete exon
          Length = 16481

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ctactatgagcagggagttc 476
             ||||||||||||||||||||
Sbjct: 13921 ctactatgagcagggagttc 13902

>ref|NR_001564.1| Homo sapiens X (inactive)-specific transcript (XIST) on chromosome X
          Length = 19271

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ctactatgagcagggagttc 476
             ||||||||||||||||||||
Sbjct: 13928 ctactatgagcagggagttc 13909

>ref|NR_001464.1| Bos taurus X (inactive)-specific transcript (XIST) on chromosome X
          Length = 34635

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ctactatgagcagggagttc 476
             ||||||||||||||||||||
Sbjct: 29266 ctactatgagcagggagttc 29247

>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19,
              complete sequence
          Length = 191582

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    tcagggacatccacgcgctg 315
              ||||||||||||||||||||
Sbjct: 187780 tcagggacatccacgcgctg 187799

>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones
             DS02190 and DS00906, complete sequence
          Length = 163403

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gctcctccagcttcagctga 69
             ||||||||||||||||||||
Sbjct: 31554 gctcctccagcttcagctga 31573

>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete
              sequence
          Length = 314957

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     gctcctccagcttcagctga 69
              ||||||||||||||||||||
Sbjct: 169146 gctcctccagcttcagctga 169127

>gb|U41394.1|MMMB414A1 Mus musculus X inactivation transcript (Xist) gene, cosmid MB4-14A,
            fragment 1
          Length = 16921

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  ctactatgagcagggagttc 476
            ||||||||||||||||||||
Sbjct: 8291 ctactatgagcagggagttc 8272

>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3
          Length = 252150

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    ctactatgagcagggagttc 476
              ||||||||||||||||||||
Sbjct: 123870 ctactatgagcagggagttc 123851

>emb|X59289.1|MMSIST Mouse Xist (X inactive specific transcript) mRNA for open reading
            frame
          Length = 4057

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  ctactatgagcagggagttc 476
            ||||||||||||||||||||
Sbjct: 1914 ctactatgagcagggagttc 1895

>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete
              sequence
          Length = 229724

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    ctactatgagcagggagttc 476
              ||||||||||||||||||||
Sbjct: 159793 ctactatgagcagggagttc 159812

>emb|AJ421481.1| Bos taurus X-inactivation center region, Jpx and Xist genes
          Length = 233345

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    ctactatgagcagggagttc 476
              ||||||||||||||||||||
Sbjct: 145562 ctactatgagcagggagttc 145543

>emb|X56199.1|HSXISTA Human XIST, coding sequence "a" mRNA (locus DXS399E)
          Length = 1614

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  ctactatgagcagggagttc 476
            ||||||||||||||||||||
Sbjct: 1240 ctactatgagcagggagttc 1221

>emb|AJ429140.1|SSC429140 Sus scrofa partial Xist gene for X inactive-specific transcript
          Length = 814

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 ctactatgagcagggagttc 476
           ||||||||||||||||||||
Sbjct: 547 ctactatgagcagggagttc 528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,804,063
Number of Sequences: 3902068
Number of extensions: 2804063
Number of successful extensions: 50275
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50123
Number of HSP's gapped (non-prelim): 148
length of query: 509
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 487
effective length of database: 17,147,199,772
effective search space: 8350686288964
effective search space used: 8350686288964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)