>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
           protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -2

Query: 122 TICTSVSLRASTRVSSGFAPLRHSSPSFGSRQ--ACSNSNPS 3
           ++  ++S + S   S G  PL H SP+F SRQ  A +++NP+
Sbjct: 172 SLSAALSQQRSLSSSFGHTPLLHPSPTFASRQQGALTSANPA 213

>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein|
           15)
          Length = 735

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -2

Query: 119 ICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNP 6
           +CT  S RA      GF P    SPSFG     S   P
Sbjct: 159 VCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTP 196

>CRBB1_CHICK (P07530) Beta crystallin B1 (Beta-35)|
          Length = 238

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -1

Query: 486 GFDSMTTVLLLNRPTPLWVLG*RAVGHRNPASGSSRIASSAYQKWPTWSTRFRGTAHRSS 307
           GFD + +V++ + P   WV    A    N       +    Y +W TWS+ +R     S 
Sbjct: 74  GFDRVRSVIVSSGP---WV----AYEQANMRGEMFILEKGEYPRWDTWSSSYRSDCFMSM 126

Query: 306 RAI 298
           R I
Sbjct: 127 RPI 129

>MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA polymerase II|
           transcription subunit 4)
          Length = 270

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 192 GNFGGNQLLDGSIS--LSPLYPSQTNDLHVSIASSLHQSFLWLRP 64
           G+  G+ L  G +   L+P YP Q+ND+ V++    H S   L P
Sbjct: 200 GHLPGDALAAGRLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEP 244

>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
 Frame = -3

Query: 340  HPIPWHGSPKQPSHPTYLKFENRSRTLRPQCL*SLALPDRTRNGLQLS*GKLRREPAT-- 167
            HP+  HGSP +  +P  L   +    +   C   +      R  L    G    E  +  
Sbjct: 1105 HPLEMHGSPSKKENPCQLCNSSGLTYISVHCPKGITDVFNRRGPLPAYLGSNTSESTSIL 1164

Query: 166  -RWFD*SFAPIPKSDERFARQYRFEPPPEFPLASPRSGIVHHLSGPD 29
              W   S  PI K   R      +  PPE PL++     +  L+G D
Sbjct: 1165 QPWEKESKIPIIKRATRLRDAISWFIPPESPLSTCILNNIRALTGED 1211

>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 16  LEHACRDPKDGELCLSGAKPEETLVEARSDTDVQIV 123
           +E  C D  + +LC   A+ +ETL+  RSD+ ++++
Sbjct: 80  IETFCTDANEKQLCREIAQGDETLIVQRSDSFMKLL 115

>SEUSS_ARATH (Q8W234) Transcriptional corepressor SEUSS|
          Length = 877

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 327 HGIGCSKWAIFGKQNWRCGM-NRKPGYGAQLRANLEPTRVLVD*EAG 464
           +G G     +F +  W C + NRKPG G +  A + P    +  E+G
Sbjct: 350 YGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESG 396


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,824,255
Number of Sequences: 219361
Number of extensions: 1720013
Number of successful extensions: 4163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4161
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)