>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast|
           precursor (Light-harvesting complex I 17 kDa protein)
           (PSI-F)
          Length = 235

 Score =  197 bits (501), Expect = 1e-50
 Identities = 101/125 (80%), Positives = 102/125 (81%)
 Frame = +3

Query: 114 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXX 293
           KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTF                      
Sbjct: 17  KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATSPPPAA 76

Query: 294 XDIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQF 473
            DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYG+F
Sbjct: 77  ADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKF 136

Query: 474 GLLCG 488
           GLLCG
Sbjct: 137 GLLCG 141

>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast|
           precursor (Light-harvesting complex I 17 kDa protein)
           (PSI-F)
          Length = 232

 Score =  113 bits (282), Expect = 3e-25
 Identities = 62/115 (53%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = +3

Query: 147 SVSCSASSGDN-NNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 323
           S+ CS S+ +  NN+    SL A                            DI+GLTPCK
Sbjct: 33  SIVCSGSTDEKINNADGKSSLKA-----LSAALALSSILVSSTVPALPASADISGLTPCK 87

Query: 324 ESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFGLLCG 488
           ESK FAKREKQS+KKL SSLK YAPDSAPALAI+AT++KTKRRF+NYG+ GLLCG
Sbjct: 88  ESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCG 142

>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast|
           precursor (Light-harvesting complex I 17 kDa protein)
           (PSI-F)
          Length = 231

 Score =  107 bits (268), Expect = 1e-23
 Identities = 50/64 (78%), Positives = 60/64 (93%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFG 476
           DIAGLTPCKESK FAKREKQ++KKL +SLK YA DSAPALAI+AT++KTK+RF+NYG++G
Sbjct: 78  DIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYG 137

Query: 477 LLCG 488
           LLCG
Sbjct: 138 LLCG 141

>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast|
           precursor (Light-harvesting complex I 17 kDa protein)
           (PSI-F) (P21 protein)
          Length = 227

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 48/115 (41%), Positives = 64/115 (55%)
 Frame = +3

Query: 144 LSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 323
           L V+C A   +  +   T +L+AS                           DIAGLTPC 
Sbjct: 24  LRVACQAQKNETASKVGT-ALAAS-----------ALAAAVSLSAPSAAMADIAGLTPCS 71

Query: 324 ESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFGLLCG 488
           ESKA+AK EK+ +K L   LK+Y  DSAPA+A++AT+++TK RF NY + GLLCG
Sbjct: 72  ESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCG 126

>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)|
          Length = 183

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 37/64 (57%), Positives = 44/64 (68%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFG 476
           D+AGL PCK SK F +R   SVKKL S L KY P++ P LA++  I+KTK RF  YG  G
Sbjct: 23  DVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAG 82

Query: 477 LLCG 488
           LLCG
Sbjct: 83  LLCG 86

>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor|
           (PSI-F)
          Length = 186

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 35/64 (54%), Positives = 46/64 (71%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFG 476
           D+AGL PC +S AF +R K + ++L + LKKY P SAPA A+Q  IDKT++RF+ Y   G
Sbjct: 26  DVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSG 85

Query: 477 LLCG 488
           LLCG
Sbjct: 86  LLCG 89

>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)|
          Length = 185

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 36/64 (56%), Positives = 45/64 (70%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFG 476
           ++AGL PCK+S AF KR   SVKKL + L KY  ++ PALA+   I+KTK RF  YG+ G
Sbjct: 25  EVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAG 84

Query: 477 LLCG 488
           LLCG
Sbjct: 85  LLCG 88

>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)|
          Length = 185

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 35/64 (54%), Positives = 42/64 (65%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFG 476
           DI GLT C ES AF KR K SVKKL   + KY   S PALA+Q  I++T+ RF+ Y +  
Sbjct: 25  DIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSE 84

Query: 477 LLCG 488
           LLCG
Sbjct: 85  LLCG 88

>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)|
          Length = 187

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/60 (41%), Positives = 35/60 (58%)
 Frame = +3

Query: 309 LTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFGLLCG 488
           LTPC+ S  F  R   ++KKL + L  Y  +S    +I+  I+KTK RF+ Y +  LLCG
Sbjct: 31  LTPCENSAQFQARLNNNIKKLENKLTYYKQNSQEYTSIKQQIEKTKIRFDKYAKSSLLCG 90

>PSAF_CUCSA (P42048) Photosystem I reaction center subunit III (Photosystem I|
           18.5 kDa protein) (PSI-F) (PS I subunit 7) (Fragment)
          Length = 26

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKL 371
           DI+GLTPCKESK F KREKQ  K L
Sbjct: 1   DISGLTPCKESKQFXKREKQQXKXL 25

>PSAF_PEA (P20119) Photosystem I reaction center subunit III|
           (Light-harvesting complex I 17 kDa protein) (PSI-F)
           (Fragment)
          Length = 20

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 300 IAGLTPCKESKAFAKREKQ 356
           I+GLTPCKESK FAKREKQ
Sbjct: 2   ISGLTPCKESKQFAKREKQ 20

>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor|
           (PSI-F)
          Length = 164

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKT--KRRFENYGQ 470
           D+AGL PCK+S AF KR                     A A+  T D    ++RFE Y Q
Sbjct: 24  DVAGLVPCKDSPAFQKR--------------------AAAAVNTTADPASGQKRFERYSQ 63

Query: 471 FGLLCG 488
              LCG
Sbjct: 64  --ALCG 67

>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor|
           (PSI-F)
          Length = 164

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKT--KRRFENYGQ 470
           D+AGL PCK+S AF KR                     A A+  T D    ++RFE Y Q
Sbjct: 24  DVAGLVPCKDSPAFQKR--------------------AAAAVNTTADPASGQKRFERYSQ 63

Query: 471 FGLLCG 488
              LCG
Sbjct: 64  --ALCG 67

>PSAF_MAIZE (P13193) Photosystem I reaction center subunit III|
           (Light-harvesting complex I 17 kDa protein) (PSI-F)
           (Fragment)
          Length = 20

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +3

Query: 300 IAGLTPCKESKAFAKREK 353
           IAGLTP KESKAFAK EK
Sbjct: 2   IAGLTPPKESKAFAKXEK 19

>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor|
           (PSI-F)
          Length = 159

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 23/64 (35%), Positives = 26/64 (40%)
 Frame = +3

Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGQFG 476
           D+AGLTPC ES  F +R                       A  A   + K RFENY Q  
Sbjct: 24  DVAGLTPCSESPRFIQR-----------------------AEAAATPQAKARFENYSQ-- 58

Query: 477 LLCG 488
            LCG
Sbjct: 59  ALCG 62

>MXI1_RAT (O09015) MAX-interacting protein 1 (MXI1 protein)|
          Length = 228

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203
           PRL  S+PP RLS +   SSG +N STA  S
Sbjct: 40  PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70

>MXI1_MOUSE (P50540) MAX-interacting protein 1 (MXI1 protein)|
          Length = 228

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203
           PRL  S+PP RLS +   SSG +N STA  S
Sbjct: 40  PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70

>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)|
          Length = 1220

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 457 SNRRLVLSMVAWMASAGAESGAYFLSDELSFLTDCFSRLAKALD 326
           SNR  +L+  A +  A         SDELS LT+ F+ +  ALD
Sbjct: 493 SNRSHILTTSANLTEARLPDYRRLFSDELSDLTETFNTMTDALD 536

>AMPH_ECOLI (P0AD70) Penicillin-binding protein ampH|
          Length = 385

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 300 IAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSA 407
           IA LT    S+   K   Q   KLN  L KYAP  A
Sbjct: 85  IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120

>AMPH_ECO57 (P0AD71) Penicillin-binding protein ampH|
          Length = 385

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 300 IAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSA 407
           IA LT    S+   K   Q   KLN  L KYAP  A
Sbjct: 85  IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120

>MXI1_HUMAN (P50539) MAX-interacting protein 1 (MXI1 protein)|
          Length = 228

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203
           PRL  S+PP RLS +   SSG +N STA  S
Sbjct: 40  PRLQHSKPPRRLSRAQKHSSGTSNTSTANRS 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.112    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,652,101
Number of Sequences: 219361
Number of extensions: 342531
Number of successful extensions: 1893
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)