| Clone Name | baet113e03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, complete sequence Length = 158608 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 caacctcaggccctccagcacc 131 |||||||||||||||||||||| Sbjct: 111643 caacctcaggccctccagcacc 111622
>gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, complete sequence Length = 186051 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 433 aggacatggccaagacagtggc 454 |||||||||||||||||||||| Sbjct: 45375 aggacatggccaagacagtggc 45354
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 ccgggcgaggtcagtgccgag 181 ||||||||||||||||||||| Sbjct: 2101766 ccgggcgaggtcagtgccgag 2101786
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 tgccgctgagcagttcgttca 432 ||||||||||||||||||||| Sbjct: 4022592 tgccgctgagcagttcgttca 4022612
>gb|AF027686.1|AF027686 Onobrychis viciifolia glycine-rich protein mRNA, complete cds Length = 778 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 122 ctccagcaccgagtcctccccctcc 146 ||||||||||||||||||| ||||| Sbjct: 299 ctccagcaccgagtcctcctcctcc 275
>gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, complete sequence Length = 163874 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 caacctcaggccctccagca 129 |||||||||||||||||||| Sbjct: 153414 caacctcaggccctccagca 153395
>ref|XM_471560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2922 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 419 gagcagttcgttcaaggacatggccaagacag 450 ||||| |||| ||||||||||||||| ||||| Sbjct: 612 gagcaattcgctcaaggacatggccaggacag 643
>gb|AF297184.1| Oncorhynchus mykiss intestine Na/Pi cotransporter NaPi-IIb1 mRNA, partial cds Length = 871 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 agcagggacagggccaccaggatg 104 |||||||||||||||| ||||||| Sbjct: 534 agcagggacagggccagcaggatg 511
>emb|AL109614.28|HSBA425M5 Human DNA sequence from clone RP11-425M5 on chromosome 20 Contains the GLRXP gene for glutaredoxin (thioltransferase) pseudogene, the PPIAP3 gene for peptidylprolyl isomerase A (cyclophilin A) pseudogene 3, the NNAT gene for neuronatin, the BLCAP gene for bladder cancer 10 kD protein BC10, a novel gene and three CpG islands, complete sequence Length = 194433 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 agggacagggccaccaggatggca 107 |||||||||||||||||| ||||| Sbjct: 156107 agggacagggccaccaggctggca 156130
>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24, complete sequence Length = 132465 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 419 gagcagttcgttcaaggacatggccaagacag 450 ||||| |||| ||||||||||||||| ||||| Sbjct: 6201 gagcaattcgctcaaggacatggccaggacag 6170
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 419 gagcagttcgttcaaggacatggccaagacag 450 ||||| |||| ||||||||||||||| ||||| Sbjct: 157059 gagcaattcgctcaaggacatggccaggacag 157028
>gb|AF214654.1| Arthrobotrys dactyloides calmodulin-binding protein kinase mRNA, complete cds Length = 1820 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 gcaagccatcctcaaagccg 347 |||||||||||||||||||| Sbjct: 1034 gcaagccatcctcaaagccg 1053
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 419 gagcagttcgttcaaggacatggccaagacag 450 ||||| |||| ||||||||||||||| ||||| Sbjct: 12332175 gagcaattcgctcaaggacatggccaggacag 12332144
>gb|AC129882.3| Ornithorhynchus anatinus clone OA_Bb-265D21, complete sequence Length = 149952 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aaggagcctctcaaccccag 82 |||||||||||||||||||| Sbjct: 132613 aaggagcctctcaaccccag 132632
>gb|AE004909.1| Pseudomonas aeruginosa PAO1, section 470 of 529 of the complete genome Length = 11063 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 cagcagggacagggccaccaggat 103 |||||||| ||||||||||||||| Sbjct: 1640 cagcagggccagggccaccaggat 1617
>dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136A15, full insert sequence Length = 1549 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 419 gagcagttcgttcaaggacatggccaagacag 450 ||||| |||| ||||||||||||||| ||||| Sbjct: 505 gagcaattcgctcaaggacatggccaggacag 536
>gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complete sequence Length = 177145 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caacctcaggccctccagca 129 |||||||||||||||||||| Sbjct: 103546 caacctcaggccctccagca 103565
>gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosome 12, complete sequence Length = 174961 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 cagttcgttcaaggacatggccaa 445 |||||| ||||||||||||||||| Sbjct: 108496 cagttctttcaaggacatggccaa 108473
>dbj|AP003037.2| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2331C18, complete sequences Length = 121567 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 gctgtgccgctgagcagttc 427 |||||||||||||||||||| Sbjct: 75568 gctgtgccgctgagcagttc 75587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,071,067 Number of Sequences: 3902068 Number of extensions: 3071067 Number of successful extensions: 58407 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58285 Number of HSP's gapped (non-prelim): 122 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)