ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet113e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, com... 44 0.43
2gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, co... 44 0.43
3gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 1.7
4gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.7
5gb|AF027686.1|AF027686 Onobrychis viciifolia glycine-rich protei... 42 1.7
6gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, co... 40 6.7
7ref|XM_471560.1| Oryza sativa (japonica cultivar-group), predic... 40 6.7
8gb|AF297184.1| Oncorhynchus mykiss intestine Na/Pi cotransporter... 40 6.7
9emb|AL109614.28|HSBA425M5 Human DNA sequence from clone RP11-425... 40 6.7
10emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4,... 40 6.7
11emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 6.7
12gb|AF214654.1| Arthrobotrys dactyloides calmodulin-binding prote... 40 6.7
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
14gb|AC129882.3| Ornithorhynchus anatinus clone OA_Bb-265D21, comp... 40 6.7
15gb|AE004909.1| Pseudomonas aeruginosa PAO1, section 470 of 529 o... 40 6.7
16dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
17gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complet... 40 6.7
18gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosom... 40 6.7
19dbj|AP003037.2| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 6.7

>gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, complete sequence
          Length = 158608

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 110    caacctcaggccctccagcacc 131
              ||||||||||||||||||||||
Sbjct: 111643 caacctcaggccctccagcacc 111622



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>gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, complete sequence
          Length = 186051

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 433   aggacatggccaagacagtggc 454
             ||||||||||||||||||||||
Sbjct: 45375 aggacatggccaagacagtggc 45354



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 161     ccgggcgaggtcagtgccgag 181
               |||||||||||||||||||||
Sbjct: 2101766 ccgggcgaggtcagtgccgag 2101786



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 412     tgccgctgagcagttcgttca 432
               |||||||||||||||||||||
Sbjct: 4022592 tgccgctgagcagttcgttca 4022612



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>gb|AF027686.1|AF027686 Onobrychis viciifolia glycine-rich protein mRNA, complete cds
          Length = 778

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 122 ctccagcaccgagtcctccccctcc 146
           ||||||||||||||||||| |||||
Sbjct: 299 ctccagcaccgagtcctcctcctcc 275



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>gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, complete sequence
          Length = 163874

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    caacctcaggccctccagca 129
              ||||||||||||||||||||
Sbjct: 153414 caacctcaggccctccagca 153395



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>ref|XM_471560.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 419 gagcagttcgttcaaggacatggccaagacag 450
           ||||| |||| ||||||||||||||| |||||
Sbjct: 612 gagcaattcgctcaaggacatggccaggacag 643



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>gb|AF297184.1| Oncorhynchus mykiss intestine Na/Pi cotransporter NaPi-IIb1 mRNA,
           partial cds
          Length = 871

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 81  agcagggacagggccaccaggatg 104
           |||||||||||||||| |||||||
Sbjct: 534 agcagggacagggccagcaggatg 511



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>emb|AL109614.28|HSBA425M5 Human DNA sequence from clone RP11-425M5 on chromosome 20 Contains the
              GLRXP gene for glutaredoxin (thioltransferase) pseudogene,
              the PPIAP3 gene for peptidylprolyl isomerase A (cyclophilin
              A) pseudogene 3, the NNAT gene for neuronatin, the BLCAP
              gene for bladder cancer 10 kD protein BC10, a novel gene
              and three CpG islands, complete sequence
          Length = 194433

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     agggacagggccaccaggatggca 107
              |||||||||||||||||| |||||
Sbjct: 156107 agggacagggccaccaggctggca 156130



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>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24,
            complete sequence
          Length = 132465

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 419  gagcagttcgttcaaggacatggccaagacag 450
            ||||| |||| ||||||||||||||| |||||
Sbjct: 6201 gagcaattcgctcaaggacatggccaggacag 6170



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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
              complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 419    gagcagttcgttcaaggacatggccaagacag 450
              ||||| |||| ||||||||||||||| |||||
Sbjct: 157059 gagcaattcgctcaaggacatggccaggacag 157028



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>gb|AF214654.1| Arthrobotrys dactyloides calmodulin-binding protein kinase mRNA,
            complete cds
          Length = 1820

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 328  gcaagccatcctcaaagccg 347
            ||||||||||||||||||||
Sbjct: 1034 gcaagccatcctcaaagccg 1053



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 419      gagcagttcgttcaaggacatggccaagacag 450
                ||||| |||| ||||||||||||||| |||||
Sbjct: 12332175 gagcaattcgctcaaggacatggccaggacag 12332144



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>gb|AC129882.3| Ornithorhynchus anatinus clone OA_Bb-265D21, complete sequence
          Length = 149952

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     aaggagcctctcaaccccag 82
              ||||||||||||||||||||
Sbjct: 132613 aaggagcctctcaaccccag 132632



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>gb|AE004909.1| Pseudomonas aeruginosa PAO1, section 470 of 529 of the complete
            genome
          Length = 11063

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 80   cagcagggacagggccaccaggat 103
            |||||||| |||||||||||||||
Sbjct: 1640 cagcagggccagggccaccaggat 1617



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>dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136A15, full
           insert sequence
          Length = 1549

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 419 gagcagttcgttcaaggacatggccaagacag 450
           ||||| |||| ||||||||||||||| |||||
Sbjct: 505 gagcaattcgctcaaggacatggccaggacag 536



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>gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complete sequence
          Length = 177145

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    caacctcaggccctccagca 129
              ||||||||||||||||||||
Sbjct: 103546 caacctcaggccctccagca 103565



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>gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosome 12, complete sequence
          Length = 174961

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 422    cagttcgttcaaggacatggccaa 445
              |||||| |||||||||||||||||
Sbjct: 108496 cagttctttcaaggacatggccaa 108473



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>dbj|AP003037.2| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2331C18, complete
             sequences
          Length = 121567

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   gctgtgccgctgagcagttc 427
             ||||||||||||||||||||
Sbjct: 75568 gctgtgccgctgagcagttc 75587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,071,067
Number of Sequences: 3902068
Number of extensions: 3071067
Number of successful extensions: 58407
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58285
Number of HSP's gapped (non-prelim): 122
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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