ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet113d12 |
|---|---|
| Clone Library Name | barley_pub |
>WDR43_HUMAN (Q15061) WD-repeat protein 43| Length = 720 Score = 32.3 bits (72), Expect = 0.32 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = -2 Query: 183 SVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIRVGQRCGP*GPPARQLPCA 10 ++ LR V G AP R +P+ G + CS + + G C P P +PCA Sbjct: 8 ALQLRDCACVGEGAAPPRAGAPAHGRTRGCSGARAAMAAGGGGSCDPLAPAG--VPCA 63
>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein| 15) Length = 735 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -2 Query: 192 ICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIR 64 +CT S RA GF P SPSFG S P Q ++ Sbjct: 159 VCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQ 201
>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding| protein xGLI4) (xGLI-4) Length = 1361 Score = 30.8 bits (68), Expect = 0.93 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Frame = -2 Query: 195 TICTSVSLRASTRVSSGFAPLRHSSPSFGSRQ--ACSNSNPS 76 ++ ++S + S S G PL H SP+F SRQ A +++NP+ Sbjct: 172 SLSAALSQQRSLSSSFGHTPLLHPSPTFASRQQGALTSANPA 213
>Y309_HALSA (Q9HSB8) Putative aldolase Vng0309c (EC 4.2.1.-)| Length = 265 Score = 28.9 bits (63), Expect = 3.5 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 134 SGIVHHLSGPDRRAPTRTLHRRSGSASGAAREGLPLVSF 18 +G + HL+ P +T RR+G+ A R G VSF Sbjct: 71 AGYIVHLNASTTLGPDQTDKRRTGTVEDAVRAGADAVSF 109
>MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA polymerase II| transcription subunit 4) Length = 270 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -1 Query: 265 GNFGGNQLLDGSIS--LSPLYPSQTNDLHVSIASSLHQSFLWLRP 137 G+ G+ L G + L+P YP Q+ND+ V++ H S L P Sbjct: 200 GHLPGDALAAGRLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEP 244
>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin| A-sensitivity protein 1) Length = 700 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +2 Query: 89 LEHACRDPKDGELCLSGAKPEETLVEARSDTDVQIV 196 +E C D + +LC A+ +ETL+ RSD+ ++++ Sbjct: 80 IETFCTDANEKQLCREIAQGDETLIVQRSDSFMKLL 115
>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 521 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/52 (34%), Positives = 22/52 (42%) Frame = -3 Query: 188 ARQYRFEPPPEFPLASPRSGIVHHLSGPDRRAPTRTLHRRSGSASGAAREGL 33 A Q + PPP P P I+ +GPD +AP SG A GL Sbjct: 398 ALQAKGAPPPPPPPPPPAEDILAFYAGPDEKAP----QEASGDGEAAGVLGL 445
>RF3_PHOLL (Q7MZN3) Peptide chain release factor 3 (RF-3)| Length = 529 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -1 Query: 265 GNFGGNQLLDGSISLSPL-YPSQTNDLHVSIASSLHQSFLW 146 GNFG N +LDG + +P P QT+ VS F++ Sbjct: 261 GNFGVNHMLDGLVKWAPAPMPRQTDVREVSAQEDKFTGFIF 301
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/69 (23%), Positives = 28/69 (40%) Frame = -2 Query: 216 PYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIRVGQRCGP*G 37 P + R ++ +++ S S G P R SSP + +P+ + C P Sbjct: 574 PPSPNRESLALALTAAHSRSGSEGRTPERASSPGLNKPLLATGDSPAPSVGDLAACAPSP 633 Query: 36 PPARQLPCA 10 A +PC+ Sbjct: 634 TSAAHMPCS 642
>MED4_HUMAN (Q9NPJ6) Mediator complex subunit 4 (Mediator of RNA polymerase II| transcription subunit 4) (Vitamin D3 receptor-interacting protein complex 36 kDa component) (DRIP36) (Activator-recruited cofactor 36 kDa component) (ARC36) (TRAP/SMCC/PC2 subu Length = 270 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -1 Query: 265 GNFGGNQLLDGSIS--LSPLYPSQTNDLHVSIASSLHQSFLWLRP 137 G+ G+ L G + L+P YP Q+ND+ +++ H S L P Sbjct: 200 GHLPGDALAAGRLPDVLAPQYPWQSNDMSMNMLPPNHSSDFLLEP 244
>PAPPA_HUMAN (Q13219) Pappalysin-1 precursor (EC 3.4.24.79)| (Pregnancy-associated plasma protein-A) (PAPP-A) (Insulin-like growth factor-dependent IGF-binding protein 4 protease) (IGF-dependent IGFBP-4 protease) (IGFBP-4ase) Length = 1628 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -2 Query: 171 RASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIRVGQRCGP*GP 34 R + + S P + PSF + C+++NP+ K + CG GP Sbjct: 576 RGISEIQSCSDPCMETEPSFETGDLCNDTNPAPK---HKSCGDPGP 618
>PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79)| (Pregnancy-associated plasma protein-A) (PAPP-A) (Insulin-like growth factor-dependent IGF-binding protein 4 protease) (IGF-dependent IGFBP-4 protease) (IGFBP-4ase) Length = 1624 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -2 Query: 171 RASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIRVGQRCGP*GP 34 R + + S P + PSF + C+++NP+ K + CG GP Sbjct: 572 RGISEIQSCSDPCMETEPSFETGDLCNDTNPAPKHKF---CGDPGP 614 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,399,705 Number of Sequences: 219361 Number of extensions: 942293 Number of successful extensions: 2693 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2693 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
