ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet113b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY968589.1| Triticum aestivum ice recrystallization inhibitio... 323 3e-85
2gb|AY968588.1| Triticum aestivum ice recrystallization inhibitio... 96 1e-16
3ref|XM_422019.1| PREDICTED: Gallus gallus similar to Ste-20 rela... 42 1.5
4dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.5
5gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosom... 40 5.9
6ref|NM_188607.1| Oryza sativa (japonica cultivar-group), Ozsa821... 40 5.9
7ref|XM_472425.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
8ref|XM_613578.2| PREDICTED: Bos taurus similar to Activated RNA ... 40 5.9
9ref|XM_872977.1| PREDICTED: Bos taurus similar to Activated RNA ... 40 5.9
10gb|AY584193.1| Homo sapiens clone G10 Trypanosoma cruzi infected... 40 5.9
11gb|BC010967.1| Mus musculus SUB1 homolog (S. cerevisia, mRNA (cD... 40 5.9
12gb|AC121860.4| Mus musculus BAC clone RP24-105K16 from chromosom... 40 5.9
13ref|XR_004933.1| PREDICTED: Mus musculus similar to Activated RN... 40 5.9
14ref|XM_544790.2| PREDICTED: Canis familiaris similar to reticulo... 40 5.9
15gb|AY188755.1| Zea mays atypical receptor-like kinase MARK (ark)... 40 5.9
16gb|BC059874.1| Mus musculus cDNA clone MGC:69748 IMAGE:6810402, ... 40 5.9
17gb|BC039936.1| Mus musculus mRNA similar to RNA polymerase II tr... 40 5.9
18emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
19dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.9
20ref|NM_011294.2| Mus musculus SUB1 homolog (S. cerevisia (Sub1),... 40 5.9
21dbj|AK132021.1| Mus musculus 10, 11 days embryo whole body cDNA,... 40 5.9
22dbj|AK146335.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-... 40 5.9
23dbj|AK151734.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 5.9
24ref|NM_172784.1| Mus musculus low density lipoprotein receptor-r... 40 5.9
25dbj|AK154114.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.9
26dbj|AK036676.1| Mus musculus adult male bone cDNA, RIKEN full-le... 40 5.9
27ref|NM_001039491.1| Gallus gallus ribonuclease T2 (RNASET2), mRNA 40 5.9
28dbj|AK035071.1| Mus musculus 12 days embryo embryonic body betwe... 40 5.9
29dbj|AK049260.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 5.9
30dbj|AK050544.1| Mus musculus adult pancreas islet cells cDNA, RI... 40 5.9
31dbj|AK048919.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 5.9
32dbj|AK048371.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.9
33gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Canc... 40 5.9
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
36gb|AC012511.7| Homo sapiens BAC clone RP11-548P2 from 2, complet... 40 5.9
37gb|AF283103.1|AF283103 Pineapple mealybug wilt associated virus-... 40 5.9
38dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39gb|AC018463.11| Homo sapiens BAC clone RP11-295J19 from 2, compl... 40 5.9
40dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
41dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
42dbj|AK099863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
43gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, comple... 40 5.9
44dbj|AK065429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
45dbj|AK065381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
46emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on ch... 40 5.9
47emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chr... 40 5.9
48gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complet... 40 5.9
49gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, comple... 40 5.9
50emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, ... 40 5.9
51gb|J03750.1|MUSBPP9 Mouse single stranded DNA binding protein p9... 40 5.9 
>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2
           precursor, mRNA, complete cds
          Length = 1596

 Score =  323 bits (163), Expect = 3e-85
 Identities = 302/346 (87%), Gaps = 3/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 89  ccatggcgaaatgcgggctgctgctgctctgcttggcgtttctcttgccagcggcgtgcg 148
           |||||||||||| | ||||||||||| |||||||||||||||||||||| |||||  |||
Sbjct: 20  ccatggcgaaatcctggctgctgctgttctgcttggcgtttctcttgccggcggcaagcg 79

                                                                       
Query: 149 cgacctgccaccccgacgacctacgcgcgctgcggggcttggcccggaacctcagaggcg 208
           |||| |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||
Sbjct: 80  cgacgtgccaccccgacgacctacgtgcgctgcggggcttggcc-ggaaccttaggggcg 138

                                                                       
Query: 209 gtggtgccgtccacctccgcacggtgtggtctggcgcctcgtgctgcgattgggaaggtg 268
           |||| ||   |||||||| ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 139 gtggcgcg--ccacctccacagcgtgtggtctggcgcctcgtgctgcgattgggaaggtg 196

                                                                       
Query: 269 tgggctgccatggcgccaacggccgcgtcaccgtgctgcggctccccggccatggcctcg 328
           ||||||||||||| |||| |||||||||||| |  ||||||||||  || || |||||||
Sbjct: 197 tgggctgccatggtgccagcggccgcgtcacggctctgcggctccatggtcacggcctcg 256

                                                                       
Query: 329 cagggtccatcccaggagcctctctcgcaggcctggcgcgcttggaggagctcttcctca 388
           | ||| |||||||||||||||| || || |||||     | |||||||||||||||||  
Sbjct: 257 cggggcccatcccaggagcctcccttgcgggcctcataaggttggaggagctcttccttg 316

                                                         
Query: 389 gctccaactctttcgccggcacccttcccgatgcgctcttcggcct 434
           |||||||||||||||| |||||||||||||| | ||||||| ||||
Sbjct: 317 gctccaactctttcgcgggcacccttcccgacgagctcttcagcct 362
to top
>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1
           precursor, mRNA, complete cds
          Length = 1079

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 216/269 (80%), Gaps = 6/269 (2%)
 Strand = Plus / Plus

                                                                       
Query: 82  gctgattccatggcgaaatgcgggctgctgctgctctgcttggcgtttctcttgccagcg 141
           ||||| |||||||||||||||||||||||||| || | ||||||||| |||||||| |||
Sbjct: 80  gctgaatccatggcgaaatgcgggctgctgctcctgttcttggcgttcctcttgccggcg 139

                                                                       
Query: 142 g--cgtgc-gcgacctgccaccccgacgacctacgcgcgctgcggggcttggcccggaac 198
           |  |||||  || | ||||||||||| ||||| || ||||| |||||||| ||| | |||
Sbjct: 140 gcacgtgcaacgtcgtgccaccccgatgacctccgtgcgctacggggcttcgccggaaac 199

                                                                       
Query: 199 ctcagaggcggtggtgccgtccacctccgcacggtgtggtctggcgcctcgtgctgcgat 258
           ||||   ||||||| || | || ||||||  | |  ||||| || ||||| |||||||  
Sbjct: 200 ctca---gcggtggggctgccctcctccgtgctgcctggtccggtgcctcctgctgcgtc 256

                                                                       
Query: 259 tgggaaggtgtgggctgccatggcgccaacggccgcgtcaccgtgctgcggctccccggc 318
           |||||||| |||  |||| ||||| | | |||||| ||||| | |||||||||||| || 
Sbjct: 257 tgggaaggcgtgaactgcgatggcactagcggccgtgtcacggcgctgcggctccctggg 316

                                        
Query: 319 catggcctcgcagggtccatcccaggagc 347
           || |||||||  |||  ||||||||||||
Sbjct: 317 cacggcctcgtggggctcatcccaggagc 345
to top
>ref|XM_422019.1| PREDICTED: Gallus gallus similar to Ste-20 related kinase SPAK
           (LOC424173), mRNA
          Length = 2544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 gggtccatcccaggagcctct 351
           |||||||||||||||||||||
Sbjct: 581 gggtccatcccaggagcctct 601
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 305     tgcggctccccggccatggcc 325
               |||||||||||||||||||||
Sbjct: 2355023 tgcggctccccggccatggcc 2355043
to top
>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    gctgctgctgctctgcttgg 124
              ||||||||||||||||||||
Sbjct: 204086 gctgctgctgctctgcttgg 204067
to top
>ref|NM_188607.1| Oryza sativa (japonica cultivar-group), Ozsa8210 predicted mRNA
          Length = 1869

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 89   ccatggcgaaatgcgggctgctgctgct 116
            |||||| |||||||| ||||||||||||
Sbjct: 1157 ccatggagaaatgcgtgctgctgctgct 1184
to top
>ref|XM_472425.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 372

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 132 cttgccagcggcgtgcgcgacctgccac 159
           |||||| ||||||||||| |||||||||
Sbjct: 87  cttgcccgcggcgtgcgcaacctgccac 60
to top
>ref|XM_613578.2| PREDICTED: Bos taurus similar to Activated RNA polymerase II
           transcriptional coactivator p15 (Positive cofactor 4)
           (PC4) (p14), transcript variant 1 (LOC533984), mRNA
          Length = 971

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 227 gctgctgctgctctgcttgg 208
to top
>ref|XM_872977.1| PREDICTED: Bos taurus similar to Activated RNA polymerase II
           transcriptional coactivator p15 (Positive cofactor 4)
           (PC4) (p14), transcript variant 2 (LOC533984), mRNA
          Length = 884

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 140 gctgctgctgctctgcttgg 121
to top
>gb|AY584193.1| Homo sapiens clone G10 Trypanosoma cruzi infected macrophage p15
           gene disrupted by LINE-1 element and Trypanosoma cruzi
           minicircle kinetoplast sequence
          Length = 1469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 212 gctgctgctgctctgcttgg 193
to top
>gb|BC010967.1| Mus musculus SUB1 homolog (S. cerevisia, mRNA (cDNA clone MGC:13711
           IMAGE:4018261), complete cds
          Length = 694

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 230 gctgctgctgctctgcttgg 211
to top
>gb|AC121860.4| Mus musculus BAC clone RP24-105K16 from chromosome 15, complete
             sequence
          Length = 148328

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   gctgctgctgctctgcttgg 124
             ||||||||||||||||||||
Sbjct: 92795 gctgctgctgctctgcttgg 92776
to top
>ref|XR_004933.1| PREDICTED: Mus musculus similar to Activated RNA polymerase II
           transcriptional coactivator p15 precursor (SUB1 homolog)
           (Positive cofactor 4) (PC4) (p14) (Single-stranded
           DNA-binding protein p9) (LOC676541), mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 174 gctgctgctgctctgcttgg 155
to top
>ref|XM_544790.2| PREDICTED: Canis familiaris similar to reticulocalbin 2
           (LOC487666), mRNA
          Length = 1793

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 103 gggctgctgctgctctgcttggcg 126
           |||||||||||||| |||||||||
Sbjct: 138 gggctgctgctgctgtgcttggcg 161
to top
>gb|AY188755.1| Zea mays atypical receptor-like kinase MARK (ark) mRNA, complete
           cds
          Length = 2085

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 286 aacggccgcgtcaccgtgctgcggctccccgg 317
           |||||||||||  | |||||||||||||||||
Sbjct: 223 aacggccgcgtggcggtgctgcggctccccgg 254
to top
>gb|BC059874.1| Mus musculus cDNA clone MGC:69748 IMAGE:6810402, complete cds
          Length = 3248

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 gcgggctgctgctgctctgc 120
           ||||||||||||||||||||
Sbjct: 126 gcgggctgctgctgctctgc 145
to top
>gb|BC039936.1| Mus musculus mRNA similar to RNA polymerase II transcriptional
           coactivator (cDNA clone IMAGE:3995690)
          Length = 1234

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 761 gctgctgctgctctgcttgg 742
to top
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 132   cttgccagcggcgtgcgcgacctgccac 159
             |||||| ||||||||||| |||||||||
Sbjct: 66952 cttgcccgcggcgtgcgcaacctgccac 66925
to top
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 280     ggcgccaacggccgcgtcaccgtgctgc 307
               |||||||||||| |||||||| ||||||
Sbjct: 3734138 ggcgccaacggctgcgtcaccttgctgc 3734111
to top
>ref|NM_011294.2| Mus musculus SUB1 homolog (S. cerevisia (Sub1), mRNA
          Length = 3321

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213
to top
>dbj|AK132021.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810422N07 product:RNA
           polymerase II transcriptional coactivator, full insert
           sequence
          Length = 682

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 231 gctgctgctgctctgcttgg 212
to top
>dbj|AK146335.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730057E04 product:RNA polymerase II
           transcriptional coactivator, full insert sequence
          Length = 517

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 231 gctgctgctgctctgcttgg 212
to top
>dbj|AK151734.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830035M10 product:RNA
           polymerase II transcriptional coactivator, full insert
           sequence
          Length = 683

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213
to top
>ref|NM_172784.1| Mus musculus low density lipoprotein receptor-related protein 11
           (Lrp11), mRNA
          Length = 3378

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 gcgggctgctgctgctctgc 120
           ||||||||||||||||||||
Sbjct: 288 gcgggctgctgctgctctgc 307
to top
>dbj|AK154114.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630002J16
           product:RNA polymerase II transcriptional coactivator,
           full insert sequence
          Length = 682

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 231 gctgctgctgctctgcttgg 212
to top
>dbj|AK036676.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830160H19 product:hypothetical
           LDL-receptor class A (LDLRA) domain profile/Low density
           lipoprotein (LDL)-receptor class A (LDLRA) domain
           containing protein, full insert sequence
          Length = 3378

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 gcgggctgctgctgctctgc 120
           ||||||||||||||||||||
Sbjct: 288 gcgggctgctgctgctctgc 307
to top
>ref|NM_001039491.1| Gallus gallus ribonuclease T2 (RNASET2), mRNA
          Length = 1783

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 382 ttcctcagctccaactcttt 401
           ||||||||||||||||||||
Sbjct: 719 ttcctcagctccaactcttt 700
to top
>dbj|AK035071.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430083L08 product:unclassifiable, full insert
           sequence
          Length = 2556

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 126 gctgctgctgctctgcttgg 145
to top
>dbj|AK049260.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330017N20 product:RNA polymerase II
           transcriptional coactivator, full insert sequence
          Length = 3321

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213
to top
>dbj|AK050544.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length
           enriched library, clone:C820013G18 product:similar to
           CDNA FLJ14735 FIS, CLONE NT2RP3002054 [Homo sapiens],
           full insert sequence
          Length = 3357

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 gcgggctgctgctgctctgc 120
           ||||||||||||||||||||
Sbjct: 274 gcgggctgctgctgctctgc 293
to top
>dbj|AK048919.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230081J16 product:weakly
           similar to CDNA FLJ14735 FIS, CLONE NT2RP3002054 [Homo
           sapiens], full insert sequence
          Length = 1493

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 gcgggctgctgctgctctgc 120
           ||||||||||||||||||||
Sbjct: 306 gcgggctgctgctgctctgc 325
to top
>dbj|AK048371.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130053F21 product:RNA polymerase II
           transcriptional coactivator, full insert sequence
          Length = 3321

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213
to top
>gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186703

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    gcgggctgctgctgctctgc 120
              ||||||||||||||||||||
Sbjct: 186286 gcgggctgctgctgctctgc 186267
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 132      cttgccagcggcgtgcgcgacctgccac 159
                |||||| ||||||||||| |||||||||
Sbjct: 20556324 cttgcccgcggcgtgcgcaacctgccac 20556297
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 89      ccatggcgaaatgcgggctgctgctgct 116
               |||||| |||||||| ||||||||||||
Sbjct: 7203038 ccatggagaaatgcgtgctgctgctgct 7203065



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 89      ccatggcgaaatgcgggctgctgctgct 116
               |||||| |||||||| ||||||||||||
Sbjct: 5773574 ccatggagaaatgcgtgctgctgctgct 5773547
to top
>gb|AC012511.7| Homo sapiens BAC clone RP11-548P2 from 2, complete sequence
          Length = 153741

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     atgcatcccagaatggtttcttgt 52
              ||||||| ||||||||||||||||
Sbjct: 149832 atgcatctcagaatggtttcttgt 149809
to top
>gb|AF283103.1|AF283103 Pineapple mealybug wilt associated virus-2 polyprotein (ORF1a) and
             RNA-dependent RNA polymerase genes, partial cds; and
             hydrophobic protein p5, heat shock protein 70, p46, coat
             protein, diverged coat protein, p20, p22, and p6 genes,
             complete cds
          Length = 14861

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   tcctcagctccaactctttc 402
             ||||||||||||||||||||
Sbjct: 10084 tcctcagctccaactctttc 10065
to top
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 89    ccatggcgaaatgcgggctgctgctgct 116
             |||||| |||||||| ||||||||||||
Sbjct: 97686 ccatggagaaatgcgtgctgctgctgct 97713
to top
>gb|AC018463.11| Homo sapiens BAC clone RP11-295J19 from 2, complete sequence
          Length = 183995

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    tcctcagctccaactctttc 402
              ||||||||||||||||||||
Sbjct: 108003 tcctcagctccaactctttc 107984
to top
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0431F01
          Length = 143209

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 89   ccatggcgaaatgcgggctgctgctgct 116
            |||||| |||||||| ||||||||||||
Sbjct: 4468 ccatggagaaatgcgtgctgctgctgct 4495
to top
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451C06
          Length = 151773

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 89    ccatggcgaaatgcgggctgctgctgct 116
             |||||| |||||||| ||||||||||||
Sbjct: 98276 ccatggagaaatgcgtgctgctgctgct 98249
to top
>dbj|AK099863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111B17, full
           insert sequence
          Length = 1198

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 89  ccatggcgaaatgcgggctgctgctgct 116
           |||||| |||||||| ||||||||||||
Sbjct: 917 ccatggagaaatgcgtgctgctgctgct 944
to top
>gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, complete sequence
          Length = 120685

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gctgctgctgctctgcttgg 124
             ||||||||||||||||||||
Sbjct: 67860 gctgctgctgctctgcttgg 67879
to top
>dbj|AK065429.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023I02, full
            insert sequence
          Length = 1924

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 89   ccatggcgaaatgcgggctgctgctgct 116
            |||||| |||||||| ||||||||||||
Sbjct: 1308 ccatggagaaatgcgtgctgctgctgct 1335
to top
>dbj|AK065381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003E06, full
            insert sequence
          Length = 2958

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 89   ccatggcgaaatgcgggctgctgctgct 116
            |||||| |||||||| ||||||||||||
Sbjct: 1314 ccatggagaaatgcgtgctgctgctgct 1341
to top
>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete
             sequence
          Length = 225179

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   gctgctgctgctctgcttgg 124
             ||||||||||||||||||||
Sbjct: 32993 gctgctgctgctctgcttgg 32974
to top
>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete
              sequence
          Length = 223547

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    cagggtccatcccaggagcc 348
              ||||||||||||||||||||
Sbjct: 211315 cagggtccatcccaggagcc 211296
to top
>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gctgctgctgctctgcttgg 124
             ||||||||||||||||||||
Sbjct: 79177 gctgctgctgctctgcttgg 79196
to top
>gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, complete sequence
          Length = 188353

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    gctgctgctgctctgcttgg 124
              ||||||||||||||||||||
Sbjct: 130343 gctgctgctgctctgcttgg 130324
to top
>emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, complete sequence
          Length = 201299

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     catcccagaatggtttcttg 51
              ||||||||||||||||||||
Sbjct: 180922 catcccagaatggtttcttg 180941
to top
>gb|J03750.1|MUSBPP9 Mouse single stranded DNA binding protein p9 mRNA, complete cds
          Length = 2777

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 gctgctgctgctctgcttgg 124
           ||||||||||||||||||||
Sbjct: 216 gctgctgctgctctgcttgg 197


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,321,027
Number of Sequences: 3902068
Number of extensions: 3321027
Number of successful extensions: 70332
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70059
Number of HSP's gapped (non-prelim): 272
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top