>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score = 91.3 bits (225), Expect = 5e-19
 Identities = 51/72 (70%), Positives = 51/72 (70%)
 Frame = +1

Query: 127 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 306
           TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ                     
Sbjct: 9   TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68

Query: 307 KKTLRQGVVVIT 342
           KKTLRQGVVVIT
Sbjct: 69  KKTLRQGVVVIT 80

>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 50/72 (69%), Positives = 50/72 (69%)
 Frame = +1

Query: 127 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 306
           TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ                     
Sbjct: 9   TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68

Query: 307 KKTLRQGVVVIT 342
           KKTLRQGVVVIT
Sbjct: 69  KKTLRQGVVVIT 80

>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 185 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 36
           AVS       L  F+G+E VEG S + +D  E  L      L++ +ELEL
Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292

>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 917

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 326 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 225
           P   V+L LGD  + P + + G+  VAT   TAS
Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291

>YHIM_ECOLI (P37630) Inner membrane protein yhiM|
          Length = 364

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 293 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 156
           D    G V+ G G +A CV T + +    LL P+NAA S +   P+
Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162

>CASK_CAMDR (P79139) Kappa-casein precursor|
          Length = 182

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 287 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 165
           VEP ++ T E AV T V+  + + F    TP    V  T+T
Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180

>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 314 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 225
           V+L LGD  + P + + G+  VAT   TAS
Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291

>CASK_LAMGU (Q28451) Kappa-casein (Fragment)|
          Length = 125

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 287 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 165
           VEP ++ T E  V T V+  + + F    TP    V  T+T
Sbjct: 83  VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123

>FLR1_YEAST (P38124) Fluconazole resistance protein 1|
          Length = 548

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = -2

Query: 272 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 93
           + TG G VA  +   S     L+L   +A       AP+L P LG   V+ ++WR +   
Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265

Query: 92  ELGLSLASTALQEFNELELECTVLLY 15
            + LS A+  L  F   E +   +LY
Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291

>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)|
          Length = 37

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 266 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 162
           T   A A   LTA++A  A  LT  +AA +  ATA
Sbjct: 2   TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36

>CASK_TAYTA (Q28794) Kappa-casein (Fragment)|
          Length = 146

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 287 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 165
           VEP L+ T E  V T V+  + + F +  TP   AV  ++T
Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144

>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 909

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 323 CRSVFLPLGDDAVEPGLVVTG 261
           CR   + LGDD  +PGLV+ G
Sbjct: 615 CRGTHVYLGDDMPDPGLVLAG 635

>XRP2_CHICK (Q5ZHN4) Protein XRP2|
          Length = 356

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 323 CRSVFLPLGDDAVEPGLVVTGEGAVATCVLTASDAF 216
           C S F+PL +      L   G+GAV  C  T +D F
Sbjct: 290 CASEFIPLLERGPVVALEFNGDGAVEGCRNTVNDVF 325

>ANPB_PSEAM (Q99013) Ice-structuring protein B precursor (ISP B) (Antifreeze|
           protein B) (HPLC8)
          Length = 82

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 266 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 162
           T   A A   LTA++A  A  LT  NAA +  ATA
Sbjct: 46  TASDAAAAAALTAANAAAAAKLTADNAAAAAAATA 80

>ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 903

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 323 CRSVFLPLGDDAVEPGLVVTG 261
           CR   + LGDD  +PGLV+ G
Sbjct: 613 CRGTHVYLGDDMPDPGLVLAG 633

>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 200 TPRNAAVSFTATAPMLLPFLGT-ERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 24
           TP+      TAT P+ LP  G  E+ +G+ +  +D   LG  L +  L     L L C V
Sbjct: 605 TPKPGTSQSTATGPISLPSTGAGEQGDGQRFSTVDMAVLGGVLGALLL-----LALICLV 659

Query: 23  LL 18
           +L
Sbjct: 660 IL 661

>ANPA_PSEAM (P04002) Ice-structuring protein A precursor (ISP A) (Antifreeze|
           protein A) (HPLC6)
          Length = 82

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 266 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 162
           T   A A   LTA++A  A  LT  NAA +  ATA
Sbjct: 46  TASDAAAAAALTAANAKAAAELTAANAAAAAAATA 80

>RBL_ARCFU (O28635) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)|
          Length = 441

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 26/74 (35%), Positives = 32/74 (43%)
 Frame = -2

Query: 305 PLGDDAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERV 126
           P  DD V    +   EG       T  DA  A+      AA S T T   L P+   ERV
Sbjct: 17  PQKDDIVAVFRITPAEG------FTIEDAAGAV------AAESSTGTWTSLHPWYDEERV 64

Query: 125 EGRSWRAMDDGELG 84
           +G S +A D  +LG
Sbjct: 65  KGLSAKAYDFVDLG 78

>HAS1_CANAL (Q5AK59) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)|
          Length = 565

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 278 GLVVTGEGAVATCVLTASDAFFALLLTPRN--AAVSFTATAPMLLPFLGTER 129
           G   TG G     ++ A +  ++L + PRN  A +  T T  + L   G  R
Sbjct: 150 GAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVAR 201

>TRAM7_ECOLI (P33787) Protein traM|
          Length = 127

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = -2

Query: 194 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 24
           R   VSF+ATA MLL  LG    E +    M+  E   + A     EFN+L LEC V
Sbjct: 29  REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75

>TRAM6_ECOLI (P18808) Protein traM|
          Length = 127

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = -2

Query: 194 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 24
           R   VSF+ATA MLL  LG    E +    M+  E   + A     EFN+L LEC V
Sbjct: 29  REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75

>CASK_UNCUN (Q29150) Kappa-casein (Fragment)|
          Length = 146

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 284 EPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 165
           EP L  T E  V T V T + + F +  TP    V  T+T
Sbjct: 105 EPTLTPTTEPIVNTVVTTEASSEFTITSTPETTTVPVTST 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.124    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,439,602
Number of Sequences: 219361
Number of extensions: 315616
Number of successful extensions: 920
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)