ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet112f04 |
|---|---|
| Clone Library Name | barley_pub |
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.6 bits (57), Expect(2) = 0.46 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 221 VTHSLADFDFHDHRP 177 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245 Score = 23.9 bits (50), Expect(2) = 0.46 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 78 LPKMAHLGHPIPWHGSPKQPSHP 10 LP +HL P+ G P++PS P Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQP 278
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.6 bits (57), Expect(2) = 0.46 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 221 VTHSLADFDFHDHRP 177 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245 Score = 23.9 bits (50), Expect(2) = 0.46 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 78 LPKMAHLGHPIPWHGSPKQPSHP 10 LP +HL P+ G P++PS P Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQP 278
>PLMN_BOVIN (P06868) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = +1 Query: 103 PEAGLRCPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKMDGAE 267 P AGL R P K W T R W+ + K+C T AP+ G E Sbjct: 424 PNAGLTMNYCRNPDADKSPWCYTTDPRVRWEFCNLKKCSETPEQVPAAPQAPGVE 478
>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1906 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +1 Query: 121 CPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTT 225 C PRTHK C S + SWK+ KEC T Sbjct: 1452 CSHLHKPRTHKACRSGRCP---SWKANKWKECSVT 1483
>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) (Nucleoporin Nup84) Length = 742 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 186 VMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERH 305 V+ + +R G+ N SPAE+ P S P P HL R+ Sbjct: 22 VVFLRLREGLKNQSPAEADKPATSTSPSCPPLPPHLPTRN 61
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +1 Query: 94 RDEPEAGLRCPTAR*PRTHKGCWSI--KTAGR---WSWKSKSAKECV 219 RD PEA +RC T R R H C + + GR ++W+ K C+ Sbjct: 1707 RDMPEAFIRCYTCR-KRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCI 1752
>RS13_THEVO (Q97B96) 30S ribosomal protein S13P| Length = 171 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 95 GMNRKPGYGAQLRANLEPTKGVGRLRQQD 181 G+ + GY R NL+PTK +G L++ + Sbjct: 54 GIGLRLGYAIAERLNLQPTKKIGELKEDE 82
>DBP2_YEAST (P24783) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-) (DEAD box| protein 2) (p68-like protein) Length = 546 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = +2 Query: 41 HGIGCPKWAIFGKQNWRCGMNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSR 199 +G G P++ G + R G R+ GYG G G RQ+DGG G+R Sbjct: 498 YGGGHPRYG--GGRGGRGGYGRRGGYGGG-------RGGYGGNRQRDGGWGNR 541
>SYQ_CHRVO (Q7NX86) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 560 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 7/30 (23%) Frame = -1 Query: 221 VTHSLADFDFHDHRPA-------VLIDQHP 153 +THSL +F DHRP + I+ HP Sbjct: 227 ITHSLCSLEFEDHRPLYDWVLDNISIEHHP 256
>OPA1_MOUSE (P58281) Dynamin-like 120 kDa protein, mitochondrial precursor| (Large GTP-binding protein) (LargeG) Length = 960 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 181 RWS-WKSKSAKECVTTHLPNQLAPKMDGAEARDPHPAIWAS 300 RW WK+++ ++CV N+L + + D HPA AS Sbjct: 774 RWMYWKNRTQEQCVHNETKNELEKML---KVNDEHPAYLAS 811
>CCNL1_CHICK (Q5ZJP9) Cyclin-L1| Length = 534 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +3 Query: 15 GSAASVSRATESGAPSGPFLVSRTGDAG*TGSRVTVP 125 GSAA+V+ A G P+GP T A TGS VP Sbjct: 6 GSAAAVA-AVAGGGPAGPHAAGVTAGAVTTGSGAPVP 41
>GATA5_CHICK (P43692) Transcription factor GATA-5 (GATA-binding factor 5)| Length = 391 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 11/43 (25%) Frame = -3 Query: 99 IPHRQFCLPKMAHLGHPIPW-----------HGSPKQPSHPTY 4 +P+ Q C P +HLG+P W GSP PS +Y Sbjct: 46 LPYLQSCEPHQSHLGNPPGWAQSSGETTAFNAGSPHPPSGFSY 88
>CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)| (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) Length = 244 Score = 28.1 bits (61), Expect = 5.7 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 175 AGRWSWKSKSAKEC 216 AGRW W+ K++KEC Sbjct: 227 AGRWWWEDKNSKEC 240
>PGMI_AERPE (Q9YE01) Bifunctional phosphoglucose/phosphomannose isomerase| (Glucose-6-phosphate isomerase) (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Mannose-6-phosphate isomerase) (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) Length = 335 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 9/33 (27%) Frame = -1 Query: 335 RPPRPPTHR--GMALAQMAG-------CGSRAS 264 RPPRPP HR G+ LA +G CGS S Sbjct: 70 RPPRPPRHRGYGLVLASYSGNTLETVECGSLLS 102
>MTH9_DROME (Q9W0R6) Probable G-protein coupled receptor Mth-like 9 precursor| (Protein methuselah-like 9) Length = 513 Score = 27.7 bits (60), Expect = 7.4 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +2 Query: 23 CFGEPCHGIGCPKWAIFGKQNWRCGM 100 C +PC CP+ +F ++W C M Sbjct: 84 CLLKPCISFCCPENLVFDAKHWNCTM 109
>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34| Length = 500 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +2 Query: 92 CGMNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV 217 C R+P + LR P+K + R R Q+ GH R SV Sbjct: 168 CSQGRQPTASSDLRMETTPSKAL-RSRLQEEGHSDRGSSGSV 208
>CAP16_ARATH (Q8L936) Putative clathrin assembly protein At4g40080| Length = 365 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 332 PPRPPTHRGMALAQMAGCGSRASAPS 255 P PP +R +A+ AG GSRA+A S Sbjct: 49 PSTPPGNRHLAVILSAGTGSRATASS 74
>YADA_YERPS (P10858) Adhesin yadA precursor| Length = 432 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = -2 Query: 103 VHPASPVLLTKN------GPLGAPDSVARLTEAAEPSYL 5 ++PA P+L +N GP G ARL EA +P L Sbjct: 55 LYPAKPILRQENPKLPPRGPQGPEKKRARLAEAIQPQVL 93
>YMM1_CAEEL (P34489) Hypothetical protein K01B6.1| Length = 732 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -3 Query: 87 QFCLPKMAHLGHPIPWHGSPKQPSHPT 7 + C P + G P+ SPK P+ PT Sbjct: 223 KLCFPNVRGRGRPMQGRSSPKSPTSPT 249 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,924,042 Number of Sequences: 219361 Number of extensions: 1249312 Number of successful extensions: 3384 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3264 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3382 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
