>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 25.8 bits (55), Expect(2) = 1.0
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
 Frame = +3

Query: 21  IGQPNHQHTTLPPSSFRPPT-----------PASHGLARRLPDPLAQA 131
           I +PN Q TT PP S RP T           PA+  + RR P P A +
Sbjct: 2   IAKPN-QATTEPPLSLRPGTVPTVPATTPARPATITIQRRHPAPKADS 48



 Score = 24.6 bits (52), Expect(2) = 1.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 136 PCAPRRPGRSMRTIRSALLHPDSPPGPSSRLRAAA 240
           P   + PG      ++A+ HP +   PS+ + AAA
Sbjct: 68  PAPAQTPGAQKTQSQAAITHPAAVASPSAPVAAAA 102

>PGCB_MOUSE (Q61361) Brevican core protein precursor|
          Length = 883

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 130 QRPCAPRRPGRSMRTIRSALLHPDSPPGPSSRLRAA 237
           Q  C PRRPGR++R++ +    P+ P G  SR R A
Sbjct: 844 QISCVPRRPGRALRSMDA----PEGPRGQLSRHRKA 875

>ATI2_EHV1V (Q6S6Q7) Alpha trans-inducing factor 82 kDa protein|
          Length = 750

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 121 SPKQRPCAPRRPGRSMRTIRSALLHPDSPPGPSSRLRAAADDGD 252
           +P  RP  P R GRS   +    L P SP G +    +  +D D
Sbjct: 611 TPYMRPSRPSRAGRSRVRVEDQTLEPSSPAGCNPPANSPENDSD 654

>PYRD_MYCLE (P46727) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 356

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 142 APRRPG----RSMRTIRSALLHPDSPPGPSSRLRAAADDGDSDIDNLTDSVIDFRLS 300
           +P  PG    +++ ++R+ LL   +       ++ A D  DS+ID++TD  ++ RL+
Sbjct: 179 SPNTPGLRDLQAVESLRAILLGVLAETSVPVLVKIAPDISDSEIDDITDLAVELRLA 235

>CT055_MOUSE (Q8R184) Protein C20orf55 homolog|
          Length = 296

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 79  RQPAMVSLAGSQILSPKQR--PCAPRRPGRSMRTIRSALLHPDSPPGPSSRLR 231
           RQP         +L+P +R  PC+ RRP   +  + S +   DSP  PS   R
Sbjct: 73  RQPLFSPGPRGPVLTPSRRVLPCSGRRPQLDLDILSSLINLCDSPVSPSEASR 125

>RGS20_BOVIN (P79348) Regulator of G-protein signaling 20 (RGS20)|
           (Retina-specific regulator of G-protein signaling)
           (RET-RGS1)
          Length = 374

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 73  RRRQPAMVSLAGSQILSPKQRPCAPRRPGRSMRTIRSALLHPDSPPGPSSRLRAAADDGD 252
           RR   A++    + +LSP        RPGR    +R+AL  P  PPG        A  G 
Sbjct: 95  RRDFSALIPALPAAVLSPGHE----ERPGRLSLLLRAALALPGRPPGGRLPREVDASAGQ 150

Query: 253 S 255
           S
Sbjct: 151 S 151

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 118 LSPKQRPCAPRRPGRSMRTIRSALLHPDSPPGPSSRLRAAADDGDSD 258
           LSP + P APR P  + R  RSA     S    SS   +++ +G+ D
Sbjct: 358 LSPARSPSAPRAPAAAAR--RSASSSSSSSSSSSSSSSSSSSEGEED 402

>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
           SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 121 SPKQRPCAPRRPGRSMRTIRSALLHPDSPPGPSSRLRAAADDGDSDIDNLTDSV 282
           SP  RP +      S  T RS  +   +PP P S  + AA   D   D L + +
Sbjct: 721 SPVNRPSSATNKALSPITSRSPGVAVSAPPKPQSPAQNAASSQDGSQDKLAEQI 774

>VPG_PLRV (P10471) Putative genome-linked protein precursor (VPG) (17 kDa|
           protein) (ORF 5)
          Length = 156

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 82  QPAMVSLAGSQILSPKQRPCAPRRPGRSMRTIRSALLHPDSPPGPSSRLRAAA 240
           +P M   + +   S   RP  P      M     A  HP SP   SS+LR AA
Sbjct: 97  RPTMSIRSQASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAA 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,524,960
Number of Sequences: 219361
Number of extensions: 436813
Number of successful extensions: 2680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2677
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)