Clone Information

BLAST Search Result

Clone Name	baet10g08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)	33	0.17
2	COL39_CAEEL (Q09455) Cuticle collagen 39 precursor	32	0.29
3	PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS2...	32	0.49
4	MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)	32	0.49
5	IF2_CORJK (Q4JV51) Translation initiation factor IF-2	31	0.83
6	RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type rya...	31	0.83
7	MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)	31	0.83
8	Y941_PSEPK (Q88PA9) UPF0307 protein PP0941	31	0.83
9	CB029_HUMAN (Q9UKZ1) Protein C2orf29	30	1.4
10	NUCL_CHICK (P15771) Nucleolin (Protein C23)	30	1.4
11	PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS1...	30	1.4
12	DED1_YEAST (P06634) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)...	30	1.4
13	CYAA_BORPE (P15318) Bifunctional hemolysin-adenylate cyclase pre...	30	1.4
14	GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)	30	1.4
15	RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine syntha...	30	1.9
16	IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2	30	1.9
17	WA22_MYCTU (P0A686) WAG22 antigen precursor	29	2.4
18	WA22_MYCBO (P0A687) WAG22 antigen precursor	29	2.4
19	CA077_RAT (Q498T2) Protein C1orf77 homolog	29	2.4
20	CA077_HUMAN (Q9Y3Y2) Protein C1orf77	29	2.4
21	CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog	29	2.4
22	CA077_MOUSE (Q9CY57) Protein C1orf77 homolog	29	2.4
23	FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)	29	2.4
24	SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)	29	2.4
25	PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1...	29	3.2
26	SSBP2_MOUSE (Q9CYZ8) Single-stranded DNA-binding protein 2 (Sequ...	29	3.2
27	SSBP2_HUMAN (P81877) Single-stranded DNA-binding protein 2 (Sequ...	29	3.2
28	CSP_PLAVB (P08677) Circumsporozoite protein precursor (CS)	29	3.2
29	ARI1A_HUMAN (O14497) AT-rich interactive domain-containing prote...	29	3.2
30	UB2Q1_MOUSE (Q7TSS2) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3....	28	4.1
31	UB2Q1_HUMAN (Q7Z7E8) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3....	28	4.1
32	PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36	28	4.1
33	PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36	28	4.1
34	GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)	28	4.1
35	IF2_LEIXX (Q6AG49) Translation initiation factor IF-2	28	5.4
36	SSB2_STRCO (Q9X8U3) Single-stranded DNA-binding protein 2 (SSB 2...	28	5.4
37	PAWR_HUMAN (Q96IZ0) PRKC apoptosis WT1 regulator protein (Prosta...	28	5.4
38	RUVX_BORPA (Q7W3U6) Putative Holliday junction resolvase (EC 3.1...	28	5.4
39	RUVX_BORBR (Q7WF76) Putative Holliday junction resolvase (EC 3.1...	28	5.4
40	PCDH7_HUMAN (O60245) Protocadherin-7 precursor (Brain-heart prot...	28	5.4
41	DNBI_SCMVC (P13215) Major DNA-binding protein (MDBP)	28	5.4
42	CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)	28	5.4
43	AVEN_HUMAN (Q9NQS1) Cell death regulator Aven	28	5.4
44	TOXC_COCCA (Q92215) Putative fatty acid synthase subunit TOXC [I...	28	7.0
45	CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like pro...	28	7.0
46	ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdo...	28	7.0
47	CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)	28	7.0
48	Y5671_RHIME (Q92UW5) Hypothetical UPF0324 membrane protein RB0971	28	7.0
49	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	28	7.0
50	YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific...	27	9.2
51	MUTB_MYCTU (P65487) Probable methylmalonyl-CoA mutase large subu...	27	9.2
52	MUTB_MYCBO (P65488) Probable methylmalonyl-CoA mutase large subu...	27	9.2
53	CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (End...	27	9.2
54	CSP_PLACC (P08673) Circumsporozoite protein precursor (CS)	27	9.2
55	SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precurs...	27	9.2
56	SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs...	27	9.2
57	CDGT1_PAEMA (P04830) Cyclomaltodextrin glucanotransferase precur...	27	9.2
58	PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS5...	27	9.2

>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 403

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 26/72 (36%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
 Frame = +1

Query: 157 HKHAGGQLLH---GRPQPAGVPARGDQGRAGA------EAAGNNLHGGQGRGVVFVGPGG 309
           H HA G   H   G P  AG  A    G  GA       A G    GG G G    G GG
Sbjct: 185 HHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGG 244

Query: 310 SLRRVQDIGGRH 345
           +L      GG H
Sbjct: 245 ALHPHHAAGGLH 256

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>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor|
          Length = 323

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           GGQ  HG P P+G P  G QG +GA        GGQG+     GP G
Sbjct: 197 GGQRSHGLPGPSGAP--GPQGPSGAPGQPGQ-SGGQGQ----QGPAG 236

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>PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS24 precursor|
          Length = 603

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 175 QLLHGRPQPA----GVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           QLL GRP       G P  G  G AG    GN   GG G      GPGG+
Sbjct: 110 QLLLGRPLIGNGANGAPGTGQAGGAGGLLYGNGGAGGSGAPGQAGGPGGA 159



 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 220 GDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           GD G  GA    N   GG G     +G GG+
Sbjct: 542 GDGGAGGASVVANGGVGGSGGNATLIGNGGN 572

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>MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 370

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
 Frame = +1

Query: 157 HKHAGGQLLH---GRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVV---FVGPGGSLR 318
           H HA G   H   G P  AG  +    G  GA   G    GG G G       G GG+L 
Sbjct: 185 HHHAAGHHHHPTAGAPGTAGGASSSSNGAGGAGGGGPANTGGGGGGDGGGGTAGAGGALH 244

Query: 319 RVQDIGGRH 345
                GG H
Sbjct: 245 PHHSAGGLH 253

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>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 160 KHAGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           K  GG+    RP PA +P+  +  +  +++  +N  GG+GRG    GPGG
Sbjct: 220 KQGGGR----RPSPAMMPSHPNPAQMPSKS--DNFGGGRGRGGRHGGPGG 263

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>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 175  QLLHGRPQPAGVPARGDQ-GRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIG 336
            +LL G P P G    G+Q    G EA G     G+G G  + G G     VQ+ G
Sbjct: 4374 ELLAGMPDPTGDEVHGEQPAGPGGEADGEG--AGEGAGEAWEGAGDEEVAVQEAG 4426

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>MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 369

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +1

Query: 157 HKHAGGQLLH---GRPQPAGVPARGDQGRAGAEAAG--NNLHGGQGRGVVFVGPGGSLRR 321
           H HA G   H   G P  AG  +    G  GA   G  +   GG G G    G GG+L  
Sbjct: 185 HHHATGHHHHPTAGAPGAAGSASASASGAGGAGGGGPASAGGGGGGGGGGTAGAGGALHP 244

Query: 322 VQDIGGRH 345
               GG H
Sbjct: 245 HHAAGGLH 252

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>Y941_PSEPK (Q88PA9) UPF0307 protein PP0941|
          Length = 173

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 202 AGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHVAL 354
           A +P   +  +A AEA+ +  HG + R + FV   G L RVQD+   H  L
Sbjct: 41  ARLPLTDELRKALAEASKHTAHGARKRHMSFV---GKLMRVQDLDAIHALL 88

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>CB029_HUMAN (Q9UKZ1) Protein C2orf29|
          Length = 510

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRV 324
           A G+LL    Q     A G   R+G   +G    G  G G    GPGG   R+
Sbjct: 9   ASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRM 61

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 220 GDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRH 345
           G +G  G    G    GG+G G  F G GG  R  +  GG H
Sbjct: 643 GGRGGRGGRGGGRGGFGGRGGGRGFGGRGGGFRGGRGGGGDH 684

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>PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS10 precursor|
          Length = 801

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +1

Query: 175 QLLHGRPQPA----GVPARGDQGRAGAEAAGNNLHGGQGR-GVVFVGPGGS 312
           Q L GRP       G P  G  G AG    GN  +GGQG  G V  G GG+
Sbjct: 400 QTLTGRPLIGNGANGTPGTGADGGAGGWLFGNGGNGGQGTIGGVNGGAGGA 450

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>DED1_YEAST (P06634) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) (DEAD box|
           protein 1)
          Length = 604

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +1

Query: 229 GRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHV 348
           GR G     NN  GG G G  F G  G  R     GGR +
Sbjct: 50  GRGGGSFFSNNRRGGYGNGGFFGGNNGGSRSNGRSGGRWI 89

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>CYAA_BORPE (P15318) Bifunctional hemolysin-adenylate cyclase precursor|
            (Cyclolysin) (ACT) (AC-HLY) [Contains:
            Calmodulin-sensitive adenylate cyclase (EC 4.6.1.1) (ATP
            pyrophosphate-lyase) (Adenylyl cyclase); Hemolysin]
          Length = 1706

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 241  AEAAGNNLHGGQGRGVV-FVGPGGSLRRVQDIGGRHVALSL 360
            A  AGN L GG GR  V F GPG  L    D G + V LSL
Sbjct: 1468 AANAGNLLDGGDGRDTVDFSGPGRGL----DAGAKGVFLSL 1504

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>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)|
          Length = 1258

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/65 (36%), Positives = 25/65 (38%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRH 345
           A G L  G P+P G P RG  G           H G         PGG  RR  D   R 
Sbjct: 595 AEGTLPAGCPRPLG-PRRGSDGPTYGHG-----HAGAAPAFPHEAPGGGTRRASDPVRRP 648

Query: 346 VALSL 360
            ALSL
Sbjct: 649 DALSL 653

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>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 184 HGRPQPAGVPARGDQGRAG--AEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGR 342
           +G  +PAG P+ G  G  G    A+ N   GG G G    GPGG     +  GGR
Sbjct: 481 YGAARPAGRPSGGRPGPGGNRGPASANRGPGGPGGGA--RGPGGPGGAPRGPGGR 533

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>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 23/57 (40%), Positives = 23/57 (40%)
 Frame = +1

Query: 172 GQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGR 342
           GQ  H RP   G    G QG AG   A     GGQG G  F G G         GGR
Sbjct: 256 GQWGHNRPGQGG----GSQG-AGQGGARGGFRGGQGGGNNFQGGGAPSNGPARGGGR 307

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>WA22_MYCTU (P0A686) WAG22 antigen precursor|
          Length = 914

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 175 QLLHGRPQ----PAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           + L GRP      +G P  GD G AG    GN  +GG G        GG+
Sbjct: 524 EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAAGTNGSAGGA 573

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>WA22_MYCBO (P0A687) WAG22 antigen precursor|
          Length = 914

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 175 QLLHGRPQ----PAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           + L GRP      +G P  GD G AG    GN  +GG G        GG+
Sbjct: 524 EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAAGTNGSAGGA 573

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>CA077_RAT (Q498T2) Protein C1orf77 homolog|
          Length = 248

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 155 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191

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>CA077_HUMAN (Q9Y3Y2) Protein C1orf77|
          Length = 248

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 155 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191

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>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog|
          Length = 248

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 155 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191

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>CA077_MOUSE (Q9CY57) Protein C1orf77 homolog|
          Length = 249

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 156 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 192

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>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)|
          Length = 694

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 184 HGRPQPAGVPAR-GDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           HGRP  A  P R G +G  G +AA     GG G G      GG+
Sbjct: 182 HGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGGGKARPPGGGA 225

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>SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)|
          Length = 747

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 AGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           AG   +G  G  G++ AG    GGQG G      GG+
Sbjct: 143 AGGAGQGGYGGLGSQGAGRGGLGGQGAGAAAAAAGGA 179



 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           GGQ        AG   +G  G  G +  G    GGQG G    G  G
Sbjct: 586 GGQGAGAAAAAAGGAGQGGYGGLGGQGVGRGGLGGQGAGAAAAGGAG 632



 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           GGQ        AG   +G  G  G++ AG    GGQG G       G
Sbjct: 70  GGQGAGAAAAAAGGAGQGGYGGLGSQGAGRGGLGGQGAGAAAAAAAG 116



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 202 AGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRR 321
           AG   +G  G  G++ AG    GGQG G      GG+ +R
Sbjct: 379 AGGAGQGGYGGLGSQGAGR---GGQGAGAAAAAAGGAGQR 415

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>PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 3A) (Brn-3A)
           (Oct-T1) (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +1

Query: 193 PQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           P  A +   G  G AGA A G   H G G G    GPGG
Sbjct: 123 PSLALMAGAGGAGGAGAAAGGGGAHDGPGGG---GGPGG 158

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>SSBP2_MOUSE (Q9CYZ8) Single-stranded DNA-binding protein 2 (Sequence-specific|
           single-stranded-DNA-binding protein 2)
          Length = 361

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 157 HKHAGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           H + GG +    P P G+   G Q   GA     N  GG G   + +GPGG
Sbjct: 168 HPNMGGPMQRMTP-PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217

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>SSBP2_HUMAN (P81877) Single-stranded DNA-binding protein 2 (Sequence-specific|
           single-stranded-DNA-binding protein 2)
          Length = 361

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 157 HKHAGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           H + GG +    P P G+   G Q   GA     N  GG G   + +GPGG
Sbjct: 168 HPNMGGPMQRMTP-PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217

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>CSP_PLAVB (P08677) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 196 QPAGVPARGDQGR--AGAEAAGNNLHGGQGR 282
           QPAG  A G      AG +AAG N  GGQG+
Sbjct: 255 QPAGDRAAGQPAGNGAGGQAAGGNAGGGQGQ 285

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>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID|
           domain-containing protein 1A) (SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin subfamily F member 1) (SWI-SNF complex protein
           p270) (B120) (SWI-like pr
          Length = 2285

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVP-----------ARGDQGRAGAEAAGNNLHGGQGRG 285
           AGG    G PQP   P           ARG QG  G + +G    GG G+G
Sbjct: 282 AGG----GTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKG 328

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>UB2Q1_MOUSE (Q7TSS2) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1)
          Length = 422

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 190 RPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRR 321
           +PQP G    G   + G + A     GG G G    GPG  LRR
Sbjct: 3   QPQPQGQQQPGPGQQLGVQGAAPGAGGGPGGG---PGPGPCLRR 43

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>UB2Q1_HUMAN (Q7Z7E8) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1) (Protein NICE-5)
          Length = 422

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 190 RPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRR 321
           +PQP G    G   + G + A     GG G G    GPG  LRR
Sbjct: 3   QPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGG---PGPGPCLRR 43

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>PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 172 GQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           G LL G     GV   GD G     A G    GG G     +G GG+
Sbjct: 184 GGLLLGNGGAGGVGGTGDNGVGDLGAGGGGGDGGLGGRAGLIGHGGA 230

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>PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 172 GQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           G LL G     GV   GD G     A G    GG G     +G GG+
Sbjct: 184 GGLLLGNGGAGGVGGTGDNGVGDLGAGGGGGDGGLGGRAGLIGHGGA 230

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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = +1

Query: 187 GRPQ------PAGVPARGDQGRAGAEAAGNNLHGGQGRG 285
           GRP+      P G P +G+ G  G+        GG GRG
Sbjct: 71  GRPKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRG 109

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>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2|
          Length = 916

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 187 GRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           G P+P G   +G  GR G +    +  GG G G+   G  G+
Sbjct: 211 GAPRPGGGQRQGGGGRPGFQQRPGSAGGGAGGGLQRPGGAGA 252

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>SSB2_STRCO (Q9X8U3) Single-stranded DNA-binding protein 2 (SSB 2)|
           (Helix-destabilizing protein 2)
          Length = 199

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = +1

Query: 187 GRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           G  Q  G PA       GA A G    GGQG G    G GG
Sbjct: 149 GGQQGGGAPADDPWATGGAPAGGQQGGGGQGGGGWGGGSGG 189

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>PAWR_HUMAN (Q96IZ0) PRKC apoptosis WT1 regulator protein (Prostate apoptosis|
           response-4 protein) (Par-4)
          Length = 340

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +1

Query: 187 GRPQPAGVPARGDQGRAGAEAAG---NNLHGGQGRGVVFVGPGG 309
           G    AG P  G  G   A AA    NNL GG        GPGG
Sbjct: 45  GSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGG 88

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>RUVX_BORPA (Q7W3U6) Putative Holliday junction resolvase (EC 3.1.-.-)|
          Length = 133

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/57 (35%), Positives = 22/57 (38%)
 Frame = +1

Query: 181 LHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHVA 351
           L G+ QPA   AR            N LHG  G  V  V   GS    Q + G H A
Sbjct: 66  LDGQEQPASARAR---------RFANQLHGRFGLAVELVDERGSSMEAQQLLGTHAA 113

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>RUVX_BORBR (Q7WF76) Putative Holliday junction resolvase (EC 3.1.-.-)|
          Length = 133

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/57 (35%), Positives = 22/57 (38%)
 Frame = +1

Query: 181 LHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHVA 351
           L G+ QPA   AR            N LHG  G  V  V   GS    Q + G H A
Sbjct: 66  LDGQEQPASARAR---------RFANQLHGRFGLAVELVDERGSSMEAQQLLGTHAA 113

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>PCDH7_HUMAN (O60245) Protocadherin-7 precursor (Brain-heart protocadherin)|
           (BH-Pcdh)
          Length = 1069

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 196 QPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRV 324
           +P G  + G+  RAGA A      GG G G    G GGS RR+
Sbjct: 185 EPGGGGSGGESRRAGA-ADSAPYPGGGGNGASGGGSGGSKRRL 226

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>DNBI_SCMVC (P13215) Major DNA-binding protein (MDBP)|
          Length = 1160

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 166 HACAPRAAEKLRQQQHDRSH-PPNGTATSPLAWWCTATSCKPE 41
           H    R  ++ RQ+    S+ P  G A + LA  CTA  C P+
Sbjct: 100 HGDVQRLCDETRQRYAIESYMPEEGRAPTDLAALCTAAGCDPQ 142

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>CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQ-GRGVVFVGPG 306
           AGGQ   G  Q  G    G     G   AG N  GGQ G G    G G
Sbjct: 237 AGGQAGAGGNQAGGQAGAGGNQAGGQAGAGGNRAGGQAGAGDAGAGQG 284

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>AVEN_HUMAN (Q9NQS1) Cell death regulator Aven|
          Length = 362

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           GG     RP  A   ARG  G  G +  G     G+GRG  F G  G
Sbjct: 21  GGDRHSERPGAAAAVARGGGGGGGGDGGGRR---GRGRGRGFRGARG 64

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>TOXC_COCCA (Q92215) Putative fatty acid synthase subunit TOXC [Includes:|
            3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC
            4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH]
            (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase
            (EC 2.3.1.3
          Length = 2080

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 164  MLAANCYMGGHSLREFRPAATKGEREPKLRGITSTEAKXXXXXXXXXXXXXAVSR 328
            ++  NCY  GHSL EF   A        + GI S E++             AV+R
Sbjct: 1817 LVDGNCYYAGHSLGEFSALAA-------VAGIMSVESQALIAFYRGLTMQKAVNR 1864

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>CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like protein 2)|
          Length = 1285

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 154 EHKHAGGQLLHGRPQPAGVPARG 222
           +H H GG+LL    QP G P RG
Sbjct: 743 QHVHVGGRLLAADSQPWGGPFRG 765

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>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)|
           (IAB-7) (PH189)
          Length = 493

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 184 VAVGRQHACAPRAAEKLRQQQHDRSHPPNGTATSPLA 74
           VAV +QH  AP+  ++L+QQQ  +       AT+P+A
Sbjct: 106 VAVQQQHLPAPQQQQQLQQQQQQQQQQ---LATTPVA 139

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>CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQ 276
           AGG    G+P   G  A G++   G  AAG N  GGQ
Sbjct: 206 AGGNRAGGQPAAGGNQAGGNRA-GGQPAAGGNQAGGQ 241

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>Y5671_RHIME (Q92UW5) Hypothetical UPF0324 membrane protein RB0971|
          Length = 345

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 283 GVVFVGPGGSLRRVQDIGGRHVAL 354
           G+V VG   SLRRV ++GG  VAL
Sbjct: 300 GIVAVGMKTSLRRVLEVGGDAVAL 323

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>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGG 339
           GG    G P+  G   +GD+G+ G    G N   G G      G GG      + GG
Sbjct: 200 GGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGG 256

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>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding|
           protein) (FRGY2 homolog)
          Length = 360

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 187 GRPQPAGVPARGDQGRAGAEAAGNNLH 267
           G PQ AG  A G  G A   AAG  LH
Sbjct: 35  GEPQKAGGGAGGGGGAASGPAAGTPLH 61

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>MUTB_MYCTU (P65487) Probable methylmalonyl-CoA mutase large subunit (EC|
           5.4.99.2) (MCM)
          Length = 750

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
 Frame = +1

Query: 175 QLLHGRPQPAG-------VPARGDQGRAGAEAAGNNL 264
           +L  GR +PA          A  +QGRAGA+  GNNL
Sbjct: 514 RLRAGRDEPAVRAALAELTRAAAEQGRAGADGLGNNL 550

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>MUTB_MYCBO (P65488) Probable methylmalonyl-CoA mutase large subunit (EC|
           5.4.99.2) (MCM)
          Length = 750

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
 Frame = +1

Query: 175 QLLHGRPQPAG-------VPARGDQGRAGAEAAGNNL 264
           +L  GR +PA          A  +QGRAGA+  GNNL
Sbjct: 514 RLRAGRDEPAVRAALAELTRAAAEQGRAGADGLGNNL 550

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>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 703

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 181 LHGRPQPAGVPARGDQGRAG 240
           LHG+P PAG P     G+AG
Sbjct: 107 LHGQPGPAGPPGFSRMGKAG 126

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>CSP_PLACC (P08673) Circumsporozoite protein precursor (CS)|
          Length = 398

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/61 (32%), Positives = 23/61 (37%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRH 345
           AGG    G    AG    G  GRAG  AA      G   G       G   + Q+ GG +
Sbjct: 252 AGGAGRAGNNAAAGEAGAGGAGRAGNNAAAGEAGAGGAGGNAGNKKAGDAGQGQNNGGAN 311

Query: 346 V 348
           V
Sbjct: 312 V 312

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>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II)
          Length = 833

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
 Frame = -2

Query: 169 QHACAPRAAEKLRQQQHDRSHPPNGTATSPLAWW---------CTATS-CKPE 41
           +HAC         Q QH   HP +G       WW         C+ATS C P+
Sbjct: 145 EHAC---------QCQHGTCHPRSGACRCEPGWWGAQCASACYCSATSRCDPQ 188

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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
 Frame = -2

Query: 169 QHACAPRAAEKLRQQQHDRSHPPNGTATSPLAWW---------CTATS-CKPE 41
           +HAC         Q QH   HP +G       WW         C+ATS C P+
Sbjct: 153 EHAC---------QCQHGTCHPRSGACRCEPGWWGAQCASACYCSATSRCDPQ 196

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>CDGT1_PAEMA (P04830) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 714

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 267 VEVIPRSFGSRSPLVAAGRNSRRLWP 190
           V +I R FGS + LVA  RNS   +P
Sbjct: 446 VLIIERKFGSSAALVAINRNSSAAYP 471

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>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor|
          Length = 1901

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 169  GGQLLHGRPQPAGVP--ARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
            GGQ   G     G+   A GD G  GA  AG N  GG G G  F+G  G
Sbjct: 1544 GGQGGKGGLNSTGLASAASGDGGNGGAGGAGGN--GGDGDG--FIGGSG 1588



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 169  GGQLLHGRPQPAGVP--ARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
            GGQ   G     G+   A GD G  GA  AG N  GG G G  F+G  G
Sbjct: 1339 GGQGGKGGLNSTGLASAASGDGGNGGAGGAGGN--GGDGDG--FIGGSG 1383



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIG 336
           AGG    G   P G+   G  G  G  A      G  G G    G GG++  V + G
Sbjct: 622 AGGAGGAGADNPTGIGGAGGTGGTGGAAGAGGAGGAIGTG----GTGGAVGSVGNAG 674


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,235,136
Number of Sequences: 219361
Number of extensions: 771942
Number of successful extensions: 3311
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 2960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result