ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet10g07 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 193 bits (491), Expect = 1e-49 Identities = 98/134 (73%), Positives = 99/134 (73%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXXXXXXXX 218 MASTSCFLHQST VGRTQLFVCKA KNDEAASDAAVVTSRR Sbjct: 1 MASTSCFLHQSTARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAG 60 Query: 219 XXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVL 398 YGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVL Sbjct: 61 AAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVL 120 Query: 399 RYEDSFDATSNLSV 440 RYED+FDATSNLSV Sbjct: 121 RYEDNFDATSNLSV 134
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 133 bits (334), Expect = 2e-31 Identities = 69/138 (50%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXVGRT----QLFVCKAHKNDEAASDAAVVTSRRXXXX 206 MASTSCFLH QL VC+A K A + V SRR Sbjct: 1 MASTSCFLHHHALTAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALT 60 Query: 207 XXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFP 386 YGEAANVFGK K NTD++ YSG+GFKL IP+KWNPSKEREFP Sbjct: 61 VLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREFP 120 Query: 387 GQVLRYEDSFDATSNLSV 440 GQVLRYED+FD+ SNLSV Sbjct: 121 GQVLRYEDNFDSNSNLSV 138
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 132 bits (332), Expect = 4e-31 Identities = 69/137 (50%), Positives = 79/137 (57%), Gaps = 3/137 (2%) Frame = +3 Query: 39 MASTSCFLHQS---TXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXXXXX 209 MAST CFLH T + VCKA K D+ V SRR Sbjct: 1 MASTQCFLHHQYAITTPTRTLSQRQVVTTKPNHIVCKAQKQDDVVD---AVVSRRLALSV 57 Query: 210 XXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPG 389 YGEAANVFGKAK NTD++ Y+G+GFKL++PAKWNPSKEREFPG Sbjct: 58 LIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPG 117 Query: 390 QVLRYEDSFDATSNLSV 440 QVLRYED+FDATSN+SV Sbjct: 118 QVLRYEDNFDATSNVSV 134
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 129 bits (325), Expect = 2e-30 Identities = 70/144 (48%), Positives = 84/144 (58%), Gaps = 10/144 (6%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDAAVVTS--- 188 MAST+CFLH R Q VCKA K D+ ++A V+ S Sbjct: 1 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDD--NEANVLNSGVS 58 Query: 189 RRXXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPS 368 RR YGEAANVFGK KKNT+F+ Y+G+GFKL++P+KWNPS Sbjct: 59 RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPS 118 Query: 369 KEREFPGQVLRYEDSFDATSNLSV 440 KE+EFPGQVLRYED+FDATSNLSV Sbjct: 119 KEKEFPGQVLRYEDNFDATSNLSV 142
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 128 bits (321), Expect = 7e-30 Identities = 68/143 (47%), Positives = 79/143 (55%), Gaps = 9/143 (6%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDA--AVVTSR 191 MAST CFLHQ + + VC+A K D +VV SR Sbjct: 1 MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60 Query: 192 RXXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSK 371 R YGEAANVFGK K+NTDF+AY+G+GFKL +PAKWNPSK Sbjct: 61 RLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSK 120 Query: 372 EREFPGQVLRYEDSFDATSNLSV 440 E EFPGQVLRYED+FD+TSNL V Sbjct: 121 EVEFPGQVLRYEDNFDSTSNLIV 143
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 125 bits (314), Expect = 5e-29 Identities = 66/134 (49%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Frame = +3 Query: 42 ASTSCFLHQSTXXXXXXXXXXXXVG-RTQLFVCKAHKNDEAASDAAVVTSRRXXXXXXXX 218 AST CFLHQ + +C+A K D+A + + V SRR Sbjct: 3 ASTQCFLHQYHALRSSPARTSSVPSPKPNQLICRAQKQDDANNTSNAV-SRRLALTLLIG 61 Query: 219 XXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVL 398 YGEAANVFGK K+NTDF+ Y+G+GFKL IPAKWNPSKE EFPGQVL Sbjct: 62 TAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVL 121 Query: 399 RYEDSFDATSNLSV 440 RYED+FD+TSNL V Sbjct: 122 RYEDNFDSTSNLMV 135
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 125 bits (313), Expect = 6e-29 Identities = 67/134 (50%), Positives = 80/134 (59%), Gaps = 1/134 (0%) Frame = +3 Query: 42 ASTSCFLHQ-STXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXXXXXXXX 218 AST CFLHQ + +C+A K D+A S+AAV SRR Sbjct: 3 ASTQCFLHQYHALRSSPARTSSVSSPKPNQLICRAQKQDDA-SNAAV--SRRLALTLLIG 59 Query: 219 XXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVL 398 YGEAANVFGK K+NTDF+ Y+G+GFKL +PAKWNPSKE E+PGQVL Sbjct: 60 TAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVL 119 Query: 399 RYEDSFDATSNLSV 440 RYED+FD+TSNL V Sbjct: 120 RYEDNFDSTSNLIV 133
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 122 bits (307), Expect = 3e-28 Identities = 64/138 (46%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXVGRTQL----FVCKAHKNDEAASDAAVVTSRRXXXX 206 MA ++CFLHQS + + VCKA + E + SRR Sbjct: 1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISKLVCKAQQTHEEDNSTV---SRRLALT 57 Query: 207 XXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFP 386 YGEAANVFGK KKNTDF AYSG+GF++ +PAKWNPS+E E+P Sbjct: 58 LLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYP 117 Query: 387 GQVLRYEDSFDATSNLSV 440 GQVLRYED+FDATSNL+V Sbjct: 118 GQVLRYEDNFDATSNLNV 135
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 122 bits (306), Expect = 4e-28 Identities = 64/140 (45%), Positives = 82/140 (58%), Gaps = 6/140 (4%) Frame = +3 Query: 39 MASTSCFLHQ------STXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXX 200 MAS++CFL +T + +QL +C+A K+ + +++ SRR Sbjct: 1 MASSACFLLHHAPSTPATTSRTPSHRLVPTIKPSQL-ICRAQKSSDTDENSSTAVSRRLA 59 Query: 201 XXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKERE 380 YGEAANVFGKAK NTDF+ Y+G+GF L+IPAKWNPSKE E Sbjct: 60 LTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVE 119 Query: 381 FPGQVLRYEDSFDATSNLSV 440 FPGQVLRYED+FD TSN+SV Sbjct: 120 FPGQVLRYEDNFDVTSNVSV 139
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 120 bits (300), Expect = 2e-27 Identities = 62/141 (43%), Positives = 79/141 (56%), Gaps = 7/141 (4%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDAAVVTSRRX 197 MA ++CFLHQS + + +CKA ++ E + A SRR Sbjct: 1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQSHEDDNSAV---SRRL 57 Query: 198 XXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKER 377 YGEAANVFGK K NTDF+ Y+G+GFK+ +PAKWNPSKE Sbjct: 58 ALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEI 117 Query: 378 EFPGQVLRYEDSFDATSNLSV 440 E+PGQVLR+ED+FDATSNL+V Sbjct: 118 EYPGQVLRFEDNFDATSNLNV 138
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 116 bits (290), Expect = 3e-26 Identities = 63/140 (45%), Positives = 76/140 (54%), Gaps = 6/140 (4%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXVGRT----QLFVCKAHKNDEAASDA--AVVTSRRXX 200 MAST CFLH + + QL VC+A K D +V SRR Sbjct: 1 MASTQCFLHHHALSTPARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLA 60 Query: 201 XXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKERE 380 YGEAANVFGK K +TDF Y+G+GFKL IP+KWNP+KE E Sbjct: 61 LTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVE 120 Query: 381 FPGQVLRYEDSFDATSNLSV 440 +PGQVLR+ED+FDATSN+ V Sbjct: 121 YPGQVLRFEDNFDATSNVIV 140
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 114 bits (286), Expect = 8e-26 Identities = 62/141 (43%), Positives = 74/141 (52%), Gaps = 7/141 (4%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXXV----GRTQLFVCKAHKNDEAASDA---AVVTSRRX 197 MAST CFLH + QL VC+A A +V SRR Sbjct: 1 MASTQCFLHHHALSTPARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRL 60 Query: 198 XXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKER 377 YGEAANVFGK K +TDF Y+G+GFKL IP+KWNP+KE Sbjct: 61 ALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEV 120 Query: 378 EFPGQVLRYEDSFDATSNLSV 440 E+PGQVLR+ED+FDATSN+ V Sbjct: 121 EYPGQVLRFEDNFDATSNVIV 141
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 114 bits (284), Expect = 1e-25 Identities = 64/142 (45%), Positives = 78/142 (54%), Gaps = 8/142 (5%) Frame = +3 Query: 39 MASTSCFLHQSTXXXXXXXXXXXX--------VGRTQLFVCKAHKNDEAASDAAVVTSRR 194 MA + FLHQS + R VC+A ++ E + A V R Sbjct: 1 MAYSPSFLHQSALASSAGRSSSSSSSSFRHVSLSRPVHLVCRAQQSQENNNSA--VFRRL 58 Query: 195 XXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKE 374 YGEAANVFGK KKNTDF+ Y+GEGFK+ IP+KWNPSKE Sbjct: 59 ALTLLVGAAAIGSKVSPAPXAAYGEAANVFGKPKKNTDFLPYTGEGFKIQIPSKWNPSKE 118 Query: 375 REFPGQVLRYEDSFDATSNLSV 440 E+PGQVLR+ED+FDATSN+SV Sbjct: 119 IEYPGQVLRFEDNFDATSNVSV 140
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 107 bits (268), Expect = 1e-23 Identities = 58/140 (41%), Positives = 75/140 (53%), Gaps = 6/140 (4%) Frame = +3 Query: 39 MASTSCFLHQ-----STXXXXXXXXXXXXVGRTQLFVCKAHKND-EAASDAAVVTSRRXX 200 MAST+CFLH +T + Q + + + A++ + SRR Sbjct: 1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDALLSRRLA 60 Query: 201 XXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKERE 380 YGE+ANVFGK K NTDF +G+GFK++IP+KWNPSKE E Sbjct: 61 LTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVE 120 Query: 381 FPGQVLRYEDSFDATSNLSV 440 FPGQVLRYED+FD TSN+ V Sbjct: 121 FPGQVLRYEDNFDTTSNVGV 140
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 103 bits (257), Expect = 2e-22 Identities = 49/91 (53%), Positives = 58/91 (63%) Frame = +3 Query: 168 DAAVVTSRRXXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKLMI 347 D SRR YGEAANVFGK K NTDF A +G+GF++ + Sbjct: 2 DDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQV 61 Query: 348 PAKWNPSKEREFPGQVLRYEDSFDATSNLSV 440 PAKWNPS+E E+PGQVLRYED+FDATSNL+V Sbjct: 62 PAKWNPSREVEYPGQVLRYEDNFDATSNLNV 92
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 90.5 bits (223), Expect = 2e-18 Identities = 38/60 (63%), Positives = 49/60 (81%) Frame = +3 Query: 261 YGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDSFDATSNLSV 440 YG++ANVFGK + FV Y+G+GF L++PAKWNPSKE +FPG +LRYED+FDA +NL V Sbjct: 59 YGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVV 118
>PSBP_EUGGR (P83687) Oxygen-evolving enhancer protein 2 (OEE2) (23 kDa subunit| of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 30 Score = 33.5 bits (75), Expect = 0.24 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +3 Query: 261 YGEAANVFGKAKKNTDFVAYSGEGF 335 YGE ANVFGK K+ F SG+G+ Sbjct: 2 YGEGANVFGKRKETDQFFEISGDGW 26
>PSBP1_PHYPA (P80660) Oxygen-evolving enhancer protein 2 (OEE2) (20 kDa subunit| of oxygen evolving system of photosystem II) (Fragments) Length = 43 Score = 33.1 bits (74), Expect = 0.31 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = +3 Query: 294 KKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDSFDATSNLSV 440 KK T F + G GF L +P E + ED+FDAT+NL V Sbjct: 1 KKQTGFTPFIGNGFSLDVPXSITEYGPXE------KXEDNFDATNNLFV 43
>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (HEST2) (Telomerase-associated protein 2) (TP2) Length = 1132 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Frame = -1 Query: 159 PRHSCAPCRRTAGCARR-----REQGAPR---QPGARWTGGGSRRWTPL 37 P H+ P RR GC R RE G P PGAR GG + R PL Sbjct: 187 PPHASGP-RRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPL 234
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -1 Query: 99 GAPRQPGARWTGGGSRR 49 GAPR PG R GGG+RR Sbjct: 525 GAPRGPGGRPPGGGNRR 541
>UPPP_LACPL (Q88SK7) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase) (Bacitracin resistance protein) Length = 275 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -3 Query: 397 STCPGNSRSLLGFHLAGIISLNPSPLYATKSVFFFALPNTF 275 S PG SRS G + G I + S AT+ FF A+P F Sbjct: 163 SLIPGTSRS--GATILGAILIGTSRYVATEFSFFMAIPTMF 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,225,149 Number of Sequences: 219361 Number of extensions: 756247 Number of successful extensions: 2427 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2327 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2413 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
