ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet10e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEM11_ARATH (Q9XIR8) Probable 26 proteasome complex subunit sem1-1 32 0.76
2CT059_HUMAN (Q9BYT1) Putative transporter C20orf59 30 2.2
3SEM12_ARATH (Q9FL96) Probable 26 proteasome complex subunit sem1-2 30 3.8

>SEM11_ARATH (Q9XIR8) Probable 26 proteasome complex subunit sem1-1|
          Length = 74

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +2

Query: 203 KEEGNEAVQQWEXXXXXXXXXXXFSLQLRKELES 304
           KEE  E  QQWE           FS QLRKELE+
Sbjct: 36  KEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELEN 69



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>CT059_HUMAN (Q9BYT1) Putative transporter C20orf59|
          Length = 436

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 329 WSCIQYFQIGSGICWIWHVYCYI 397
           W  I YF  G  + W+W+VY Y+
Sbjct: 183 WQSIFYFSGGLTLLWVWYVYRYL 205



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>SEM12_ARATH (Q9FL96) Probable 26 proteasome complex subunit sem1-2|
          Length = 73

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 203 KEEGNEAVQQWEXXXXXXXXXXXFSLQLRKELESIPSK 316
           KEE  E   QWE           FS QL+KELE+   K
Sbjct: 35  KEEVKEVSLQWEDDWDDDDVSDDFSRQLKKELENASEK 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,580,708
Number of Sequences: 219361
Number of extensions: 545496
Number of successful extensions: 1616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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