ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet10e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY110012.1| Zea mays CL907_1 mRNA sequence 82 1e-12
2gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 44 0.22
3ref|XM_312216.2| Anopheles gambiae str. PEST ENSANGP00000010751 ... 42 0.87
4ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predic... 40 3.4
5ref|XM_516762.1| PREDICTED: Pan troglodytes transferrin (LOC4607... 40 3.4
6gb|DQ525716.1| Homo sapiens transferrin (TF) gene, complete cds 40 3.4
7gb|AY308797.1| Homo sapiens transferrin (TF) gene, complete cds 40 3.4
8emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxyge... 40 3.4
9gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 40 3.4
10gb|BC059367.1| Homo sapiens transferrin, mRNA (cDNA clone MGC:71... 40 3.4
11gb|BC045772.1| Homo sapiens transferrin, mRNA (cDNA clone IMAGE:... 40 3.4
12emb|CR859370.1| Pongo pygmaeus mRNA; cDNA DKFZp459H0229 (from cl... 40 3.4
13gb|DQ397851.1| Cenarchaeum symbiosum clone C13G08, complete sequ... 40 3.4
14dbj|AB169522.1| Macaca fascicularis brain cDNA, clone: QccE-1376... 40 3.4
15gb|S95936.1| transferrin [human, liver, mRNA, 2347 nt] 40 3.4
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
18dbj|AK222755.1| Homo sapiens mRNA for transferrin variant, clone... 40 3.4
19dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
20dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.4
21dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
22emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 40 3.4

>gb|AY110012.1| Zea mays CL907_1 mRNA sequence
          Length = 2928

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                        
Query: 108  ccgctggcgatcgagcttagctcgccgcacccggaggatgagcgcctcggtgccaccagc 167
            ||||||||||||||||| |||||||||||||||||| | ||||  ||||| ||   ||||
Sbjct: 1531 ccgctggcgatcgagctcagctcgccgcacccggagaaggagcagctcggcgcggtcagc 1590

                                 
Query: 168  acggtgtacactccgccggac 188
            |||||||||||||| ||||||
Sbjct: 1591 acggtgtacactccaccggac 1611



to top

>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 227  ggtgtgggagctcgccaaggcc 248
            ||||||||||||||||||||||
Sbjct: 1553 ggtgtgggagctcgccaaggcc 1574



to top

>ref|XM_312216.2| Anopheles gambiae str. PEST ENSANGP00000010751 (ENSANGG00000008262),
            partial mRNA
          Length = 2298

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  cggtgccaccagcacggtgta 175
            |||||||||||||||||||||
Sbjct: 2064 cggtgccaccagcacggtgta 2044



to top

>ref|XM_462649.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2700

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 229  tgtgggagctcgccaaggcccacgcctcctccaacg 264
            ||||| ||||||||||||| |||| || ||||||||
Sbjct: 1613 tgtggcagctcgccaaggcacacgtctgctccaacg 1648



to top

>ref|XM_516762.1| PREDICTED: Pan troglodytes transferrin (LOC460710), mRNA
          Length = 3633

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  cgccgcacccggaggatgag 149
            ||||||||||||||||||||
Sbjct: 1102 cgccgcacccggaggatgag 1121



to top

>gb|DQ525716.1| Homo sapiens transferrin (TF) gene, complete cds
          Length = 33191

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 262 cgccgcacccggaggatgag 281



to top

>gb|AY308797.1| Homo sapiens transferrin (TF) gene, complete cds
          Length = 37308

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  cgccgcacccggaggatgag 149
            ||||||||||||||||||||
Sbjct: 2433 cgccgcacccggaggatgag 2452



to top

>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein
            (lox gene)
          Length = 3123

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 229  tgtgggagctcgccaaggcccacgcctcctccaacg 264
            ||||| |||||||||||||||| | || ||||||||
Sbjct: 1813 tgtggcagctcgccaaggcccatgtctgctccaacg 1848



to top

>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    cgaactcaaagccggcgccg 207
              ||||||||||||||||||||
Sbjct: 222881 cgaactcaaagccggcgccg 222862



to top

>gb|BC059367.1| Homo sapiens transferrin, mRNA (cDNA clone MGC:71545
           IMAGE:5264299), complete cds
          Length = 2330

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 32  cgccgcacccggaggatgag 51



to top

>gb|BC045772.1| Homo sapiens transferrin, mRNA (cDNA clone IMAGE:5265104),
           containing frame-shift errors
          Length = 806

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 174 cgccgcacccggaggatgag 193



to top

>emb|CR859370.1| Pongo pygmaeus mRNA; cDNA DKFZp459H0229 (from clone DKFZp459H0229)
          Length = 2392

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 100 cgccgcacccggaggatgag 119



to top

>gb|DQ397851.1| Cenarchaeum symbiosum clone C13G08, complete sequence
          Length = 38845

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   tcaaagccggcgccgacgcc 212
             ||||||||||||||||||||
Sbjct: 20988 tcaaagccggcgccgacgcc 21007



to top

>dbj|AB169522.1| Macaca fascicularis brain cDNA, clone: QccE-13766, similar to human
           transferrin (TF), mRNA, RefSeq: NM_001063.2
          Length = 2344

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 55  cgccgcacccggaggatgag 74



to top

>gb|S95936.1| transferrin [human, liver, mRNA, 2347 nt]
          Length = 2347

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 65  cgccgcacccggaggatgag 84



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 29  cgccgcacccggaggatgag 10



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 229      tgtgggagctcgccaaggcccacgcctcctccaacg 264
                ||||| ||||||||||||| |||| || ||||||||
Sbjct: 22282451 tgtggcagctcgccaaggcacacgtctgctccaacg 22282486



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 230      gtgggagctcgccaaggccc 249
                ||||||||||||||||||||
Sbjct: 22996583 gtgggagctcgccaaggccc 22996602



to top

>dbj|AK222755.1| Homo sapiens mRNA for transferrin variant, clone: HEP00268
          Length = 2328

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cgccgcacccggaggatgag 149
           ||||||||||||||||||||
Sbjct: 34  cgccgcacccggaggatgag 53



to top

>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1067_B01
          Length = 100525

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   gtgggagctcgccaaggccc 249
             ||||||||||||||||||||
Sbjct: 20980 gtgggagctcgccaaggccc 20999



to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 199     ccggcgccgacgcctccgac 218
               ||||||||||||||||||||
Sbjct: 5721861 ccggcgccgacgcctccgac 5721880



to top

>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0016G10
          Length = 143211

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    gtgggagctcgccaaggccc 249
              ||||||||||||||||||||
Sbjct: 116385 gtgggagctcgccaaggccc 116404



to top

>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 229   tgtgggagctcgccaaggcccacgcctcctccaacg 264
             ||||| ||||||||||||| |||| || ||||||||
Sbjct: 33353 tgtggcagctcgccaaggcacacgtctgctccaacg 33388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,595,312
Number of Sequences: 3902068
Number of extensions: 1595312
Number of successful extensions: 29869
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29773
Number of HSP's gapped (non-prelim): 95
length of query: 264
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 242
effective length of database: 17,147,199,772
effective search space: 4149622344824
effective search space used: 4149622344824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top