>EXPA_DROME (Q07436) Protein expanded|
          Length = 1427

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 120  G*SPV-AESITSLCSDPSSMGHVTQSTPIPSIHPRRLAAAAKQVHP*LRAQGAGSNGEXX 296
            G SP+ + S+ SLCS         +  P P +HP  LAAAA        A GAGS+    
Sbjct: 1131 GYSPLYSPSMASLCSS-------YEPPPPPPLHPAALAAAA--------AAGAGSSSSSM 1175

Query: 297  XXXXXXXXXXXSGSLHFPPIGRRWPGP 377
                       + SL   P G+R P P
Sbjct: 1176 FARSRSDDNILN-SLDLLPKGKRLPPP 1201

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
 Frame = +2

Query: 5   SRSSGERNGSSLNRENGVVGEQYKRCAARRSG*VPHPRWLKSSSRKHH*LML*PE*HGAR 184
           SRS G R+    +R+    G +Y R  ARR G VP  R  +S SR            GAR
Sbjct: 414 SRSRGRRHSDGGSRD----GHRYSRSPARRGGYVPRRR-SRSRSRSGDRYK-----RGAR 463

Query: 185 DTEHTHPIHPSTQASSSGETSAPLAAS-------TRSRQQ 283
              H    H  +  S S   S  +  S       +RSR Q
Sbjct: 464 GPRHHSSSHSRSSWSLSPSRSRSVTRSGSRSQSRSRSRSQ 503

>MNTA_BACSU (O34385) Manganese-binding lipoprotein mntA precursor|
          Length = 306

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 218 WMDGWDGCALCHVPHATRVRA*ASDAFGYW 129
           ++D W    + H+P  +RV   A DAF Y+
Sbjct: 175 YLDKWSRKEIAHIPEKSRVLVTAHDAFAYF 204

>FBP1_STRPU (P10079) Fibropellin-1 precursor (Fibropellin-I) (Epidermal growth|
           factor-related protein 1) (UEGF-1)
          Length = 1064

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
 Frame = -3

Query: 222 CVDGWMGWVCSV-----SRAPCYSG-----QSIS**CFRLLDFSHLGCGTQ 100
           C+ GW G  C +     + +PC +G     Q  S  CF L  F+ + CGT+
Sbjct: 620 CLPGWEGTNCEINTDECASSPCMNGGLCVDQVNSYVCFCLPGFTGIHCGTE 670

>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 251 VHLFRRCC*PAWMDGWDGCALCHVPHATRVRA*ASD 144
           +H F   C   W++G   C LC  P  + + + ASD
Sbjct: 30  LHAFCLACIRRWLEGRPTCPLCKAPVQSLIHSVASD 65

>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 251 VHLFRRCC*PAWMDGWDGCALCHVPHATRVRA*ASD 144
           +H F   C   W++G   C LC  P  + + + ASD
Sbjct: 30  LHAFCLACIRRWLEGRPTCPLCKAPVQSLIHSVASD 65

>GPDA_PARUW (Q6MF42) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 333

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 244 CFAAAASLRGWMDGMGVLCVTCPMLLGSEHKLVMLSATGL*PSRVRH 104
           C   A +L G + GMG LCVTC   +    +   L A GL   + R+
Sbjct: 229 CGCKAETLNG-LAGMGDLCVTCSSPISRNFRFGTLLAQGLSTEQARN 274

>CCMF_ECOLI (P33927) Cytochrome c-type biogenesis protein ccmF|
          Length = 647

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -1

Query: 335 ATTPTRSMSTAWRLCLAIAACSLCSQLGVHLFR 237
           A T  R+   AW L LAI+A SLC  LG  L R
Sbjct: 264 AVTEQRASFKAWTLLLAISAFSLC-LLGTFLVR 295

>POLN_BFV (P87515) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3
          Length = 2410

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 180  HVTQSTPIPSIHPRRLAAAAKQVHP 254
            H    TP+P   P+R A  A+++HP
Sbjct: 1732 HQAPPTPVPPPRPKRAAKLAREMHP 1756

>FPRL1_MOUSE (O08790) FMLP-related receptor I (FMLP-R-I) (Lipoxin A4 receptor)|
           (LXA4 receptor)
          Length = 351

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 317 SMSTAWRLCLAIAACSLCSQLGVHLFRRCC*PAWMDGWDGCALCHV 180
           +++T W L LA+A  S  + L   L        W  GW  C L H+
Sbjct: 58  TVTTIWYLNLALADFSFTATLPFLLVEMAMKEKWPFGWFLCKLVHI 103

>SERR_DROME (P18168) Serrate protein precursor (Protein beaded)|
          Length = 1404

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 222 CVDGWMGWVCSVSRAPCYSGQ 160
           C+ GW G  CS     CY+GQ
Sbjct: 821 CMSGWTGKRCSERATGCYAGQ 841


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,927,688
Number of Sequences: 219361
Number of extensions: 1158732
Number of successful extensions: 3388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3388
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)