ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet10c11 |
|---|---|
| Clone Library Name | barley_pub |
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/30 (66%), Positives = 22/30 (73%) Frame = +1 Query: 334 MAATTMALSSPAMKLAGASYVLGGGRITMR 423 MAA TMALSSPA+ A+ V G GRITMR Sbjct: 1 MAAATMALSSPALAGKAAAKVFGEGRITMR 30
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMR 423 MAA+TMALSSP A+KL+ GAS V G GR+TMR Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMR 36
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMR 423 MAA+TMALSSP A+KL+ AS VLG GR+TMR Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMR 36
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 35.0 bits (79), Expect = 0.095 Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSPAMK------LAGASYVLGGGRITMR 423 MAA+TMALSSPA AS VLG GR+TMR Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMR 36
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 34.7 bits (78), Expect = 0.12 Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 6/48 (12%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXP 459 MAA TMALSSP A+KL+ AS + G GRITMR P Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSP 48
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 34.7 bits (78), Expect = 0.12 Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 6/48 (12%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXP 459 MAA TMALSSP A+KL+ AS + G GRITMR P Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSP 48
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 32.7 bits (73), Expect = 0.47 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 5/47 (10%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXXXXXXP 459 MAA+TMALSS AMKLA ++ LG GR++MR P Sbjct: 1 MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSP 47
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 32.7 bits (73), Expect = 0.47 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMR 423 MA++TMALSSP A+KL AS ++G GRITMR Sbjct: 1 MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMR 36
>ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (Two pore| domain potassium channel Ork1) Length = 1001 Score = 32.3 bits (72), Expect = 0.62 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 113 RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 214 R PP P+E + SL SGG + + + DG PP Sbjct: 599 RGPPPPFESNGSLASGGGGLTNMGFQMEDGATPP 632
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 32.0 bits (71), Expect = 0.81 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMR 423 MAA+TMALSSP A+KL+ +S + G G++TMR Sbjct: 1 MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMR 36
>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA| intron-encoded homing endonuclease 1) Length = 222 Score = 32.0 bits (71), Expect = 0.81 Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +2 Query: 137 KSKSLGS--GGSMVARLKLKGIDGRAPPGVEPAA 232 KSK L G + KLKGI G AP GVEPAA Sbjct: 189 KSKKLNELLGRPLPGPSKLKGIGGGAPQGVEPAA 222
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSPAM-----KLA-GASYVLGGGRITMR 423 MAA+TMALSSPA+ K+A +S + G GR++MR Sbjct: 1 MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMR 36
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = +1 Query: 334 MAATTMALSSPAMKLAG---ASYVLGGGRITMR 423 MAA TMALSSP M A +S + G RITMR Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMR 33
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXP 459 MAA TMALSSP A+KL+ A + G GR++MR P Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSP 48
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 5/35 (14%) Frame = +1 Query: 334 MAATTMALSSP----AMKLA-GASYVLGGGRITMR 423 MAA+T ALSSP A+KL+ +S V G G++TMR Sbjct: 1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMR 35
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 5/35 (14%) Frame = +1 Query: 334 MAATTMALSSP----AMKLA-GASYVLGGGRITMR 423 MAA+T ALSSP A+KL+ +S V G G++TMR Sbjct: 1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMR 35
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSS-----PAMKL-AGASYVLGGGRITMR 423 MAATTMALSS A+KL + +S + G G++TMR Sbjct: 1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMR 36
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXP 459 MAA MALSSP A+KL+ AS G GRITMR P Sbjct: 1 MAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSSP 48
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = +1 Query: 334 MAATTMALSSPAM---KLAGASYVLGGGRITMR 423 MAA TMA++S A+ AG V G GRITMR Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMR 33
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSPA-----MKLA-GASYVLGGGRITMR 423 MAA+TMALSS +KLA +S + G GRITMR Sbjct: 1 MAASTMALSSSTFAGKTVKLAPSSSEITGNGRITMR 36
>AKT6_ARATH (Q8GXE6) Potassium channel AKT6 (Shaker pollen inward rectifier| K(+) channel) (Potassium channel SPIK) Length = 888 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = +2 Query: 8 VFINQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMV 172 V ++Q+RKL R S ++S N AD G R+P P G GGSM+ Sbjct: 773 VVVSQKRKLNNFRNSLFGIISAANSADDGGE--VPRSPAVP-------GGGGSMI 818
>SLBP2_XENLA (Q9YGP6) Oocyte-specific histone RNA stem-loop-binding protein 2| Length = 250 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -2 Query: 241 VKLSRR-LHAWWCPSVNSFKFQPCDHTPPGTQRL 143 +KL RR LHAW PS NSF+ DH+ TQRL Sbjct: 160 IKLWRRDLHAWDPPSQNSFQE---DHSFKQTQRL 190
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 3/33 (9%) Frame = +1 Query: 334 MAATTMALSSPAMKLAGASYVLGG---GRITMR 423 MAA+TMA+SS AM AG +G GRITMR Sbjct: 1 MAASTMAISSTAM--AGTPIKVGSFGEGRITMR 31
>TEGU_SHV21 (Q01056) Probable large tegument protein| Length = 2469 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = -1 Query: 251 PVLGQIKPQAPRLVVPFRQFL*VSALRPYSPRNPKTLISHKVPAESYKQHPPIP 90 P Q P+ PR P + P +PR PKT +P + K+ P IP Sbjct: 253 PTSTQKPPKTPRTPKP------ATPKAPKTPRKPKTPKESTIPYDKSKKPPKIP 300
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = +1 Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMR 423 MAA TMALSSP A+K + +S + G G+ TMR Sbjct: 1 MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMR 36
>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging| integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein 1) Length = 593 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -3 Query: 231 AAGSTPGGALPSIPLSFSLATILPPEPK 148 A G+TPG LP P +PP PK Sbjct: 319 AGGATPGATLPKSPSQLRKGPPVPPPPK 346 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,461,036 Number of Sequences: 219361 Number of extensions: 1271347 Number of successful extensions: 3231 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3220 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
