Clone Information

BLAST Search Result

Clone Name	baet10b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)	33	0.24
2	COL39_CAEEL (Q09455) Cuticle collagen 39 precursor	32	0.53
3	MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)	32	0.70
4	PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS2...	32	0.91
5	RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1...	31	1.2
6	MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)	31	1.2
7	IF2_CORJK (Q4JV51) Translation initiation factor IF-2	31	1.6
8	RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type rya...	31	1.6
9	Y941_PSEPK (Q88PA9) UPF0307 protein PP0941	31	1.6
10	RUVX_BORPA (Q7W3U6) Putative Holliday junction resolvase (EC 3.1...	30	2.0
11	RUVX_BORBR (Q7WF76) Putative Holliday junction resolvase (EC 3.1...	30	2.0
12	DED1_YEAST (P06634) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)...	30	2.7
13	PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS1...	30	2.7
14	NUCL_CHICK (P15771) Nucleolin (Protein C23)	30	2.7
15	CYAA_BORPE (P15318) Bifunctional hemolysin-adenylate cyclase pre...	30	2.7
16	GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)	30	2.7
17	CB029_HUMAN (Q9UKZ1) Protein C2orf29	30	2.7
18	CYAA_BORBR (Q57506) Bifunctional hemolysin-adenylate cyclase pre...	30	3.5
19	IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2	30	3.5
20	RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine syntha...	30	3.5
21	SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)	29	4.5
22	FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)	29	4.5
23	CA077_RAT (Q498T2) Protein C1orf77 homolog	29	4.5
24	CA077_MOUSE (Q9CY57) Protein C1orf77 homolog	29	4.5
25	CA077_HUMAN (Q9Y3Y2) Protein C1orf77	29	4.5
26	CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog	29	4.5
27	WA22_MYCTU (P0A686) WAG22 antigen precursor	29	4.5
28	WA22_MYCBO (P0A687) WAG22 antigen precursor	29	4.5
29	CSP_PLAVB (P08677) Circumsporozoite protein precursor (CS)	29	5.9
30	SSBP2_MOUSE (Q9CYZ8) Single-stranded DNA-binding protein 2 (Sequ...	29	5.9
31	SSBP2_HUMAN (P81877) Single-stranded DNA-binding protein 2 (Sequ...	29	5.9
32	PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1...	29	5.9
33	ARI1A_HUMAN (O14497) AT-rich interactive domain-containing prote...	29	5.9
34	UB2Q1_MOUSE (Q7TSS2) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3....	28	7.7
35	UB2Q1_HUMAN (Q7Z7E8) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3....	28	7.7
36	PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36	28	7.7
37	PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36	28	7.7
38	GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)	28	7.7
39	Y855_TREPA (O83827) Hypothetical protein TP0855 precursor	25	9.0

>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 403

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
 Frame = +1

Query: 157 HKHAGGQLLH---GRPQPAGVPARGDQGRAGA------EAAGNNLHGGQGRGVVFVGPGG 309
           H HA G   H   G P  AG  A    G  GA       A G    GG G G    G GG
Sbjct: 185 HHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGG 244

Query: 310 SLRRVQDIGGRHVALSLS----LSREVDSLDIVLRLVGEDE 420
           +L      GG H     S    ++  V  L+  LR V ++E
Sbjct: 245 ALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEE 285

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>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor|
          Length = 323

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           GGQ  HG P P+G P  G QG +GA        GGQG+     GP G
Sbjct: 197 GGQRSHGLPGPSGAP--GPQGPSGAPGQPGQ-SGGQGQ----QGPAG 236

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>MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 370

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
 Frame = +1

Query: 157 HKHAGGQLLH---GRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVV---FVGPGGSLR 318
           H HA G   H   G P  AG  +    G  GA   G    GG G G       G GG+L 
Sbjct: 185 HHHAAGHHHHPTAGAPGTAGGASSSSNGAGGAGGGGPANTGGGGGGDGGGGTAGAGGALH 244

Query: 319 RVQDIGGRHVALSLS----LSREVDSLDIVLRLVGEDE 420
                GG H     S    ++  V  L+  LR V ++E
Sbjct: 245 PHHSAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEE 282

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>PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS24 precursor|
          Length = 603

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 175 QLLHGRPQPA----GVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           QLL GRP       G P  G  G AG    GN   GG G      GPGG+
Sbjct: 110 QLLLGRPLIGNGANGAPGTGQAGGAGGLLYGNGGAGGSGAPGQAGGPGGA 159

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>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
            (Helicase-like protein NHL)
          Length = 1400

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +1

Query: 154  EHKHAGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDI 333
            EH + G   L  RP P G P    Q  +G   AG      QG+  V      + R +   
Sbjct: 1020 EHLNQGRPHLSPRPPPTGDPGSQPQWGSGVPRAGK-----QGQHAVSAYLADARRALGSA 1074

Query: 334  GGRHVALSLSLSREVDSLDIVLRLV 408
            G   +  +L+  ++ D LD VL ++
Sbjct: 1075 GCSQLLAALTAYKQDDDLDKVLAVL 1099

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>MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 369

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
 Frame = +1

Query: 157 HKHAGGQLLH---GRPQPAGVPARGDQGRAGAEAAG--NNLHGGQGRGVVFVGPGGSLRR 321
           H HA G   H   G P  AG  +    G  GA   G  +   GG G G    G GG+L  
Sbjct: 185 HHHATGHHHHPTAGAPGAAGSASASASGAGGAGGGGPASAGGGGGGGGGGTAGAGGALHP 244

Query: 322 VQDIGGRHVALSLS----LSREVDSLDIVLRLVGEDE 420
               GG H     S    ++  V  L+  LR V ++E
Sbjct: 245 HHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEE 281

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>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 160 KHAGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           K  GG+    RP PA +P+  +  +  +++  +N  GG+GRG    GPGG
Sbjct: 220 KQGGGR----RPSPAMMPSHPNPAQMPSKS--DNFGGGRGRGGRHGGPGG 263

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>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 175  QLLHGRPQPAGVPARGDQ-GRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIG 336
            +LL G P P G    G+Q    G EA G     G+G G  + G G     VQ+ G
Sbjct: 4374 ELLAGMPDPTGDEVHGEQPAGPGGEADGEG--AGEGAGEAWEGAGDEEVAVQEAG 4426

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>Y941_PSEPK (Q88PA9) UPF0307 protein PP0941|
          Length = 173

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 202 AGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHVAL 354
           A +P   +  +A AEA+ +  HG + R + FV   G L RVQD+   H  L
Sbjct: 41  ARLPLTDELRKALAEASKHTAHGARKRHMSFV---GKLMRVQDLDAIHALL 88

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>RUVX_BORPA (Q7W3U6) Putative Holliday junction resolvase (EC 3.1.-.-)|
          Length = 133

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +1

Query: 181 LHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRH----- 345
           L G+ QPA   AR            N LHG  G  V  V   GS    Q + G H     
Sbjct: 66  LDGQEQPASARAR---------RFANQLHGRFGLAVELVDERGSSMEAQQLLGTHAADDA 116

Query: 346 VALSLSLSREVDSL 387
           VA ++ L R +D+L
Sbjct: 117 VAAAVILQRYLDTL 130

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>RUVX_BORBR (Q7WF76) Putative Holliday junction resolvase (EC 3.1.-.-)|
          Length = 133

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +1

Query: 181 LHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRH----- 345
           L G+ QPA   AR            N LHG  G  V  V   GS    Q + G H     
Sbjct: 66  LDGQEQPASARAR---------RFANQLHGRFGLAVELVDERGSSMEAQQLLGTHAADDA 116

Query: 346 VALSLSLSREVDSL 387
           VA ++ L R +D+L
Sbjct: 117 VAAAVILQRYLDTL 130

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>DED1_YEAST (P06634) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) (DEAD box|
           protein 1)
          Length = 604

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +1

Query: 229 GRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHV 348
           GR G     NN  GG G G  F G  G  R     GGR +
Sbjct: 50  GRGGGSFFSNNRRGGYGNGGFFGGNNGGSRSNGRSGGRWI 89

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>PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS10 precursor|
          Length = 801

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +1

Query: 175 QLLHGRPQPA----GVPARGDQGRAGAEAAGNNLHGGQGR-GVVFVGPGGS 312
           Q L GRP       G P  G  G AG    GN  +GGQG  G V  G GG+
Sbjct: 400 QTLTGRPLIGNGANGTPGTGADGGAGGWLFGNGGNGGQGTIGGVNGGAGGA 450

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 220 GDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRH 345
           G +G  G    G    GG+G G  F G GG  R  +  GG H
Sbjct: 643 GGRGGRGGRGGGRGGFGGRGGGRGFGGRGGGFRGGRGGGGDH 684

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>CYAA_BORPE (P15318) Bifunctional hemolysin-adenylate cyclase precursor|
            (Cyclolysin) (ACT) (AC-HLY) [Contains:
            Calmodulin-sensitive adenylate cyclase (EC 4.6.1.1) (ATP
            pyrophosphate-lyase) (Adenylyl cyclase); Hemolysin]
          Length = 1706

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 241  AEAAGNNLHGGQGRGVV-FVGPGGSLRRVQDIGGRHVALSL 360
            A  AGN L GG GR  V F GPG  L    D G + V LSL
Sbjct: 1468 AANAGNLLDGGDGRDTVDFSGPGRGL----DAGAKGVFLSL 1504



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
 Frame = +1

Query: 220  GDQGR--AGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHVALSLSLSREV----- 378
            GD+G      +A  ++L GGQG      G G     + + GG H  + ++   +      
Sbjct: 1565 GDEGSDLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGADQLWFAR 1624

Query: 379  DSLDIVLRLVGEDE 420
               D+ +R++G D+
Sbjct: 1625 QGNDLEIRILGTDD 1638

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>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)|
          Length = 1258

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 24/65 (36%), Positives = 25/65 (38%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRH 345
           A G L  G P+P G P RG  G           H G         PGG  RR  D   R 
Sbjct: 595 AEGTLPAGCPRPLG-PRRGSDGPTYGHG-----HAGAAPAFPHEAPGGGTRRASDPVRRP 648

Query: 346 VALSL 360
            ALSL
Sbjct: 649 DALSL 653

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>CB029_HUMAN (Q9UKZ1) Protein C2orf29|
          Length = 510

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRV 324
           A G+LL    Q     A G   R+G   +G    G  G G    GPGG   R+
Sbjct: 9   ASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRM 61

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>CYAA_BORBR (Q57506) Bifunctional hemolysin-adenylate cyclase precursor|
            (Cyclolysin) (ACT) (AC-HLY) [Contains:
            Calmodulin-sensitive adenylate cyclase (EC 4.6.1.1) (ATP
            pyrophosphate-lyase) (Adenylyl cyclase); Hemolysin]
          Length = 1706

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
 Frame = +1

Query: 220  GDQGR--AGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGRHVALSLSLSREV----- 378
            GD+G      +A  ++L GGQG      G G     + + GG H  + ++   +      
Sbjct: 1565 GDEGSDLLSGDAGNDDLFGGQGDDTYLFGAGYGHDTIYESGGGHDTIRINAGADQLWFAR 1624

Query: 379  DSLDIVLRLVGEDE 420
               D+ +R++G D+
Sbjct: 1625 QGNDLEIRILGTDD 1638

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>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/57 (40%), Positives = 23/57 (40%)
 Frame = +1

Query: 172 GQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGR 342
           GQ  H RP   G    G QG AG   A     GGQG G  F G G         GGR
Sbjct: 256 GQWGHNRPGQGG----GSQG-AGQGGARGGFRGGQGGGNNFQGGGAPSNGPARGGGR 307

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>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 184 HGRPQPAGVPARGDQGRAG--AEAAGNNLHGGQGRGVVFVGPGGSLRRVQDIGGR 342
           +G  +PAG P+ G  G  G    A+ N   GG G G    GPGG     +  GGR
Sbjct: 481 YGAARPAGRPSGGRPGPGGNRGPASANRGPGGPGGGA--RGPGGPGGAPRGPGGR 533

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>SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)|
          Length = 747

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 AGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           AG   +G  G  G++ AG    GGQG G      GG+
Sbjct: 143 AGGAGQGGYGGLGSQGAGRGGLGGQGAGAAAAAAGGA 179



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           GGQ        AG   +G  G  G +  G    GGQG G    G  G
Sbjct: 586 GGQGAGAAAAAAGGAGQGGYGGLGGQGVGRGGLGGQGAGAAAAGGAG 632



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 169 GGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           GGQ        AG   +G  G  G++ AG    GGQG G       G
Sbjct: 70  GGQGAGAAAAAAGGAGQGGYGGLGSQGAGRGGLGGQGAGAAAAAAAG 116

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>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)|
          Length = 694

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 184 HGRPQPAGVPAR-GDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           HGRP  A  P R G +G  G +AA     GG G G      GG+
Sbjct: 182 HGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGGGKARPPGGGA 225

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>CA077_RAT (Q498T2) Protein C1orf77 homolog|
          Length = 248

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 155 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191

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>CA077_MOUSE (Q9CY57) Protein C1orf77 homolog|
          Length = 249

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 156 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 192

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>CA077_HUMAN (Q9Y3Y2) Protein C1orf77|
          Length = 248

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 155 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191

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>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog|
          Length = 248

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 GVPARGDQGRAGAE--AAGNNLHGGQGRGVVFVGPGG 309
           GV  RG  GR G    A G    GG+GRG++  G GG
Sbjct: 155 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191

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>WA22_MYCTU (P0A686) WAG22 antigen precursor|
          Length = 914

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 175 QLLHGRPQ----PAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           + L GRP      +G P  GD G AG    GN  +GG G        GG+
Sbjct: 524 EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAAGTNGSAGGA 573

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>WA22_MYCBO (P0A687) WAG22 antigen precursor|
          Length = 914

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 175 QLLHGRPQ----PAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           + L GRP      +G P  GD G AG    GN  +GG G        GG+
Sbjct: 524 EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAAGTNGSAGGA 573

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>CSP_PLAVB (P08677) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 196 QPAGVPARGDQGR--AGAEAAGNNLHGGQGR 282
           QPAG  A G      AG +AAG N  GGQG+
Sbjct: 255 QPAGDRAAGQPAGNGAGGQAAGGNAGGGQGQ 285

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>SSBP2_MOUSE (Q9CYZ8) Single-stranded DNA-binding protein 2 (Sequence-specific|
           single-stranded-DNA-binding protein 2)
          Length = 361

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 157 HKHAGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           H + GG +    P P G+   G Q   GA     N  GG G   + +GPGG
Sbjct: 168 HPNMGGPMQRMTP-PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217

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>SSBP2_HUMAN (P81877) Single-stranded DNA-binding protein 2 (Sequence-specific|
           single-stranded-DNA-binding protein 2)
          Length = 361

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 157 HKHAGGQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           H + GG +    P P G+   G Q   GA     N  GG G   + +GPGG
Sbjct: 168 HPNMGGPMQRMTP-PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217

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>PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 3A) (Brn-3A)
           (Oct-T1) (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +1

Query: 193 PQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGG 309
           P  A +   G  G AGA A G   H G G G    GPGG
Sbjct: 123 PSLALMAGAGGAGGAGAAAGGGGAHDGPGGG---GGPGG 158

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>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID|
           domain-containing protein 1A) (SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin subfamily F member 1) (SWI-SNF complex protein
           p270) (B120) (SWI-like pr
          Length = 2285

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
 Frame = +1

Query: 166 AGGQLLHGRPQPAGVP-----------ARGDQGRAGAEAAGNNLHGGQGRG 285
           AGG    G PQP   P           ARG QG  G + +G    GG G+G
Sbjct: 282 AGG----GTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKG 328

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>UB2Q1_MOUSE (Q7TSS2) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1)
          Length = 422

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 190 RPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRR 321
           +PQP G    G   + G + A     GG G G    GPG  LRR
Sbjct: 3   QPQPQGQQQPGPGQQLGVQGAAPGAGGGPGGG---PGPGPCLRR 43

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>UB2Q1_HUMAN (Q7Z7E8) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1) (Protein NICE-5)
          Length = 422

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 190 RPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGSLRR 321
           +PQP G    G   + G + A     GG G G    GPG  LRR
Sbjct: 3   QPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGG---PGPGPCLRR 43

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>PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 172 GQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           G LL G     GV   GD G     A G    GG G     +G GG+
Sbjct: 184 GGLLLGNGGAGGVGGTGDNGVGDLGAGGGGGDGGLGGRAGLIGHGGA 230

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>PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 172 GQLLHGRPQPAGVPARGDQGRAGAEAAGNNLHGGQGRGVVFVGPGGS 312
           G LL G     GV   GD G     A G    GG G     +G GG+
Sbjct: 184 GGLLLGNGGAGGVGGTGDNGVGDLGAGGGGGDGGLGGRAGLIGHGGA 230

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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = +1

Query: 187 GRPQ------PAGVPARGDQGRAGAEAAGNNLHGGQGRG 285
           GRP+      P G P +G+ G  G+        GG GRG
Sbjct: 71  GRPKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRG 109

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>Y855_TREPA (O83827) Hypothetical protein TP0855 precursor|
          Length = 1127

 Score = 24.6 bits (52), Expect(2) = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 336 WTSCGPEPIAESRGRFPRYCSAFG 407
           W +C P  +    GRFPR    FG
Sbjct: 440 WAACAP--LGAQHGRFPRDYETFG 461



 Score = 21.9 bits (45), Expect(2) = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 172 GQLLHGRPQPAGVPARGDQG 231
           G L+ G P  AGV +RG  G
Sbjct: 397 GSLIPGAPLSAGVGSRGAWG 416


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,340,104
Number of Sequences: 219361
Number of extensions: 1021358
Number of successful extensions: 4187
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 3798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4164
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result