ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet10a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110012.1| Zea mays CL907_1 mRNA sequence Length = 2928 Score = 91.7 bits (46), Expect = 1e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 315 atggagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcacccaatc 368 ||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1735 atggagccgatcgtgatcgcggcgaaccggcagctgagcgtgctgcacccaatc 1788 Score = 81.8 bits (41), Expect = 1e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 108 ccgctggcgatcgagcttagctcgccgcacccggaggatgagcgcctcggtgccaccagc 167 ||||||||||||||||| |||||||||||||||||| | |||| ||||| || |||| Sbjct: 1531 ccgctggcgatcgagctcagctcgccgcacccggagaaggagcagctcggcgcggtcagc 1590 Query: 168 acggtgtacactccgccggac 188 |||||||||||||| |||||| Sbjct: 1591 acggtgtacactccaccggac 1611
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 314 gatggagccggtggtgatcgcggcgaaccggcagctgagcgtg 356 |||||||||| | ||||||||| |||||||||||||||||||| Sbjct: 3645 gatggagccgttcgtgatcgcgacgaaccggcagctgagcgtg 3687
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 314 gatggagccggtggtgatcgcggcgaaccggcagctgagcgtg 356 |||||||||| | ||||||||| |||||||||||||||||||| Sbjct: 1578 gatggagccgttcgtgatcgcgacgaaccggcagctgagcgtg 1620
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 1421 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 1467
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 1900 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 1946
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 314 gatggagccggtggtgatcgcggcgaaccggcagctgagcgtg 356 |||||||||| | ||||||||| ||||||||||||| |||||| Sbjct: 1584 gatggagccgttcgtgatcgcgacgaaccggcagctcagcgtg 1626
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 64692 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 64738 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 314 gatggagccggtggtgatcgcggcgaaccggcagctgagcgtg 356 |||||||||| | ||||||||| ||||||||||||| |||||| Sbjct: 46128 gatggagccgttcgtgatcgcgacgaaccggcagctcagcgtg 46170
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 27820562 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 27820608 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 314 gatggagccggtggtgatcgcggcgaaccggcagctgagcgtg 356 |||||||||| | ||||||||| ||||||||||||| |||||| Sbjct: 27801998 gatggagccgttcgtgatcgcgacgaaccggcagctcagcgtg 27802040
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 1894 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 1940
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 27911886 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 27911932 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 314 gatggagccggtggtgatcgcggcgaaccggcagctgagcgtg 356 |||||||||| | ||||||||| ||||||||||||| |||||| Sbjct: 27893322 gatggagccgttcgtgatcgcgacgaaccggcagctcagcgtg 27893364
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 314 gatggagccggtggtgatcgcggcgaaccggcagctgagcgtg 356 |||||||||| | ||||||||| ||||||||||||| |||||| Sbjct: 11895 gatggagccgttcgtgatcgcgacgaaccggcagctcagcgtg 11853
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 307 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 353
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 1572 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 1618
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 1901 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 1947
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 318 gagccggtggtgatcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||| | ||||||||| ||||||||||||| |||||| ||||||| Sbjct: 472 gagccgttcgtgatcgcgacgaaccggcagctcagcgtggtgcaccc 518
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagcgtg 356 ||||||||| |||||||||||||||||||| Sbjct: 1060 gtgatcgcgacgaaccggcagctgagcgtg 1089
>ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Plus Query: 230 gtgggagctcgccaaggcccacgccttctccaacgacgcc 269 |||| ||||||||||||| |||| || ||||||||||||| Sbjct: 1614 gtggcagctcgccaaggcacacgtctgctccaacgacgcc 1653 Score = 46.1 bits (23), Expect = 0.079 Identities = 62/75 (82%) Strand = Plus / Plus Query: 290 ccactggctggggacgcacgcgacgatggagccggtggtgatcgcggcgaaccggcagct 349 ||||||| || ||||||||||| ||||||||| | | ||||||||| |||||||| | Sbjct: 1674 ccactggttgaggacgcacgcgtgcatggagccgttcatcatcgcggcgcaccggcagat 1733 Query: 350 gagcgtgctgcaccc 364 ||||| | ||||||| Sbjct: 1734 gagcgcgatgcaccc 1748
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 312 acgatggagccggtggtgatcgcg 335 |||||||||||||||||||||||| Sbjct: 246071 acgatggagccggtggtgatcgcg 246048
>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein (lox gene) Length = 3123 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Plus Query: 230 gtgggagctcgccaaggcccacgccttctccaacgacgcc 269 |||| |||||||||||||||| | || ||||||||||||| Sbjct: 1814 gtggcagctcgccaaggcccatgtctgctccaacgacgcc 1853
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Plus Query: 230 gtgggagctcgccaaggcccacgccttctccaacgacgcc 269 |||| ||||||||||||| |||| || ||||||||||||| Sbjct: 22282452 gtggcagctcgccaaggcacacgtctgctccaacgacgcc 22282491 Score = 40.1 bits (20), Expect = 4.9 Identities = 53/64 (82%) Strand = Plus / Plus Query: 301 ggacgcacgcgacgatggagccggtggtgatcgcggcgaaccggcagctgagcgtgctgc 360 ||||||||||| ||||||||| | | ||||||||| |||||||| |||||| | ||| Sbjct: 22282617 ggacgcacgcgtgcatggagccgttcatcatcgcggcgcaccggcagatgagcgcgatgc 22282676 Query: 361 accc 364 |||| Sbjct: 22282677 accc 22282680
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Plus Query: 230 gtgggagctcgccaaggcccacgccttctccaacgacgcc 269 |||| ||||||||||||| |||| || ||||||||||||| Sbjct: 33354 gtggcagctcgccaaggcacacgtctgctccaacgacgcc 33393 Score = 40.1 bits (20), Expect = 4.9 Identities = 53/64 (82%) Strand = Plus / Plus Query: 301 ggacgcacgcgacgatggagccggtggtgatcgcggcgaaccggcagctgagcgtgctgc 360 ||||||||||| ||||||||| | | ||||||||| |||||||| |||||| | ||| Sbjct: 33519 ggacgcacgcgtgcatggagccgttcatcatcgcggcgcaccggcagatgagcgcgatgc 33578 Query: 361 accc 364 |||| Sbjct: 33579 accc 33582
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3198 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 1982 atcgcggcgaaccggcagctcagcgagatgcaccc 2016
>ref|XM_483276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2775 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 1780 atcgcggcgaaccggcagctcagcgagatgcaccc 1814
>emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci-1 gene) Length = 3018 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 1809 gtgatcgcggcgaaccggcggctgagc 1835
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 22969138 gtgatcgcggcgaaccggcggctgagc 22969164 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Minus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 22889738 gtgatcgcggcgaaccggcggctgagc 22889712
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 25241580 atcgcggcgaaccggcagctcagcgagatgcaccc 25241614 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Minus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 25210449 atcgcggcgaaccggcagctcagcgagatgcaccc 25210415 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 cggcgtgggagctcgccaagg 246 ||||||||||||||||||||| Sbjct: 10713715 cggcgtgggagctcgccaagg 10713735
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 106703 atcgcggcgaaccggcagctcagcgagatgcaccc 106737 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Minus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 75572 atcgcggcgaaccggcagctcagcgagatgcaccc 75538
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 16765 atcgcggcgaaccggcagctcagcgagatgcaccc 16799
>dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full insert sequence Length = 3080 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 1828 gtgatcgcggcgaaccggcggctgagc 1854
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full insert sequence Length = 3196 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 1980 atcgcggcgaaccggcagctcagcgagatgcaccc 2014
>dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079G10, full insert sequence Length = 2747 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 1335 gtgatcgcggcgaaccggcggctgagc 1361
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds Length = 2232 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 1057 atcgcggcgaaccggcagctcagcgagatgcaccc 1091
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds Length = 2664 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 1465 atcgcggcgaaccggcagctcagcgagatgcaccc 1499
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds Length = 3007 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 330 atcgcggcgaaccggcagctgagcgtgctgcaccc 364 |||||||||||||||||||| |||| | ||||||| Sbjct: 1898 atcgcggcgaaccggcagctcagcgagatgcaccc 1932
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 22897329 gtgatcgcggcgaaccggcggctgagc 22897355 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Minus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 22817929 gtgatcgcggcgaaccggcggctgagc 22817903
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 78415 gtgatcgcggcgaaccggcggctgagc 78441
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 327 gtgatcgcggcgaaccggcagctgagc 353 ||||||||||||||||||| ||||||| Sbjct: 67106 gtgatcgcggcgaaccggcggctgagc 67132
>ref|XM_687577.1| PREDICTED: Danio rerio similar to FRAS1 related extracellular matrix protein 2 (LOC564233), mRNA Length = 1650 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 267 gcctgcaagaacaactatgtcctcca 292 |||||||||||||||| ||||||||| Sbjct: 243 gcctgcaagaacaactctgtcctcca 268
>ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1420 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 cggcgtgggagctcgccaagg 246 ||||||||||||||||||||| Sbjct: 686 cggcgtgggagctcgccaagg 706
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 cggcgccgccgcctccgacaccttc 224 ||||||||||||| ||||||||||| Sbjct: 98638 cggcgccgccgccgccgacaccttc 98662
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 atggagccggtggtgatcgcg 335 ||||||||||||||||||||| Sbjct: 43911 atggagccggtggtgatcgcg 43931
>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene) Length = 3023 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 gcggcgaaccggcagctgagc 353 ||||||||||||||||||||| Sbjct: 1899 gcggcgaaccggcagctgagc 1919
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 atggagccggtggtgatcgcg 335 ||||||||||||||||||||| Sbjct: 390379 atggagccggtggtgatcgcg 390399
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 cggcgccgccgcctccgacaccttc 224 ||||||||||||| ||||||||||| Sbjct: 18363273 cggcgccgccgccgccgacaccttc 18363297
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gatggagccggtggtgatcgc 334 ||||||||||||||||||||| Sbjct: 4418132 gatggagccggtggtgatcgc 4418112
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 cggcgtgggagctcgccaagg 246 ||||||||||||||||||||| Sbjct: 10847 cggcgtgggagctcgccaagg 10867
>ref|XM_312216.2| Anopheles gambiae str. PEST ENSANGP00000010751 (ENSANGG00000008262), partial mRNA Length = 2298 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 cggtgccaccagcacggtgta 175 ||||||||||||||||||||| Sbjct: 2064 cggtgccaccagcacggtgta 2044
>dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D08, full insert sequence Length = 1420 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 cggcgtgggagctcgccaagg 246 ||||||||||||||||||||| Sbjct: 686 cggcgtgggagctcgccaagg 706
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 cggcgccgccgcctccgacaccttc 224 ||||||||||||| ||||||||||| Sbjct: 18522674 cggcgccgccgccgccgacaccttc 18522698
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cgcacgcgacgatggagccg 323 |||||||||||||||||||| Sbjct: 1434118 cgcacgcgacgatggagccg 1434137
>ref|XM_516762.1| PREDICTED: Pan troglodytes transferrin (LOC460710), mRNA Length = 3633 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 1102 cgccgcacccggaggatgag 1121
>ref|XM_477289.1| Oryza sativa (japonica cultivar-group), mRNA Length = 336 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ccggcgccgccgcctccgac 218 |||||||||||||||||||| Sbjct: 200 ccggcgccgccgcctccgac 219
>gb|DQ525716.1| Homo sapiens transferrin (TF) gene, complete cds Length = 33191 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 262 cgccgcacccggaggatgag 281
>gb|AY308797.1| Homo sapiens transferrin (TF) gene, complete cds Length = 37308 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 2433 cgccgcacccggaggatgag 2452
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome Length = 1995281 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cgaactcaaagccggcgccg 207 |||||||||||||||||||| Sbjct: 222881 cgaactcaaagccggcgccg 222862
>gb|BC059367.1| Homo sapiens transferrin, mRNA (cDNA clone MGC:71545 IMAGE:5264299), complete cds Length = 2330 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 32 cgccgcacccggaggatgag 51
>gb|BC045772.1| Homo sapiens transferrin, mRNA (cDNA clone IMAGE:5265104), containing frame-shift errors Length = 806 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 174 cgccgcacccggaggatgag 193
>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10 Length = 312050 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gccggtggtgatcgcggcgaaccg 343 |||||||||||||||||| ||||| Sbjct: 256646 gccggtggtgatcgcggccaaccg 256623
>emb|CR859370.1| Pongo pygmaeus mRNA; cDNA DKFZp459H0229 (from clone DKFZp459H0229) Length = 2392 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 100 cgccgcacccggaggatgag 119
>dbj|AB169522.1| Macaca fascicularis brain cDNA, clone: QccE-13766, similar to human transferrin (TF), mRNA, RefSeq: NM_001063.2 Length = 2344 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 55 cgccgcacccggaggatgag 74
>gb|S95936.1| transferrin [human, liver, mRNA, 2347 nt] Length = 2347 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 65 cgccgcacccggaggatgag 84 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 29 cgccgcacccggaggatgag 10
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 acgatggagccggtggtgatcgcg 335 |||||||||||||||||| ||||| Sbjct: 697260 acgatggagccggtggtggtcgcg 697283
>gb|AY603381.1| Oryza sativa (japonica cultivar-group) LysM-domain GPI-anchored protein mRNA, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 gcgccgccgcctccgacaccttca 225 |||||||| ||||||||||||||| Sbjct: 201 gcgccgccacctccgacaccttca 178
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ccggcgccgccgcctccgac 218 |||||||||||||||||||| Sbjct: 8559147 ccggcgccgccgcctccgac 8559166
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 gcgccgccgcctccgacaccttca 225 |||||||| ||||||||||||||| Sbjct: 5570998 gcgccgccacctccgacaccttca 5570975
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gtgggagctcgccaaggccc 249 |||||||||||||||||||| Sbjct: 22996583 gtgggagctcgccaaggccc 22996602
>dbj|AK222755.1| Homo sapiens mRNA for transferrin variant, clone: HEP00268 Length = 2328 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgccgcacccggaggatgag 149 |||||||||||||||||||| Sbjct: 34 cgccgcacccggaggatgag 53
>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1067_B01 Length = 100525 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gtgggagctcgccaaggccc 249 |||||||||||||||||||| Sbjct: 20980 gtgggagctcgccaaggccc 20999
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664C05 Length = 165354 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 gcgccgccgcctccgacaccttca 225 |||||||| ||||||||||||||| Sbjct: 117906 gcgccgccacctccgacaccttca 117883
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gtgggagctcgccaaggccc 249 |||||||||||||||||||| Sbjct: 116385 gtgggagctcgccaaggccc 116404
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0669H03 Length = 167878 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ccggcgccgccgcctccgac 218 |||||||||||||||||||| Sbjct: 91615 ccggcgccgccgcctccgac 91634
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 40.1 bits (20), Expect = 4.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 290 ccactggctggggacgcacgcgacgatggagccggtggtgatcgcggcgaaccggcagct 349 |||||||||| ||||||||| ||| |||||| | || |||||| | ||||||||||| Sbjct: 1843 ccactggctgaacacgcacgcggtgatcgagccgttcgtaatcgcgacaaaccggcagct 1902 Query: 350 gagcgtgctgca 361 |||||| |||| Sbjct: 1903 cagcgtggtgca 1914
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cggtggtgatcgcggcgaac 341 |||||||||||||||||||| Sbjct: 594894 cggtggtgatcgcggcgaac 594875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,433,524 Number of Sequences: 3902068 Number of extensions: 2433524 Number of successful extensions: 62749 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60897 Number of HSP's gapped (non-prelim): 1851 length of query: 368 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 346 effective length of database: 17,147,199,772 effective search space: 5932931121112 effective search space used: 5932931121112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
