ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet102h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_417383.1| PREDICTED: Gallus gallus similar to solute carr... 40 1.3
2emb|BX934288.2| Gallus gallus finished cDNA, clone ChEST44o23 40 1.3
3ref|NM_214099.1| Sus scrofa insulin-like growth factor binding p... 38 5.3
4gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome... 38 5.3
5ref|XM_878464.1| PREDICTED: Bos taurus insulin-like growth facto... 38 5.3
6ref|XM_600908.2| PREDICTED: Bos taurus insulin-like growth facto... 38 5.3
7gb|U41340.2|SSU41340 Sus scrofa insulin-like growth factor bindi... 38 5.3
8gb|AC078852.5| Homo sapiens BAC clone RP11-386I15 from 4, comple... 38 5.3
9gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 38 5.3
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
11dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 5.3
12dbj|AK108862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.3
13gb|DQ320122.1| Sus scrofa insulin-like growth factor binding pro... 38 5.3
14emb|X05921.1|OCDHPR Rabbit mRNA for dihydropyridine (DHP) recept... 38 5.3
15gb|M23919.1|RABALP1A Rabbit dihydropyridine-sensitive calcium ch... 38 5.3

>ref|XM_417383.1| PREDICTED: Gallus gallus similar to solute carrier family 2 member
           10; sugar transporter GLUT10; glucose transporter 10
           (LOC419206), mRNA
          Length = 2702

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cgtgcactgctggtcctcct 79
           ||||||||||||||||||||
Sbjct: 709 cgtgcactgctggtcctcct 728



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>emb|BX934288.2| Gallus gallus finished cDNA, clone ChEST44o23
          Length = 731

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 cgtgcactgctggtcctcct 79
          ||||||||||||||||||||
Sbjct: 24 cgtgcactgctggtcctcct 43



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>ref|NM_214099.1| Sus scrofa insulin-like growth factor binding protein-5 (IGFBP5),
           mRNA
          Length = 966

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gcccgcgcatggtgccccg 100
           |||||||||||||||||||
Sbjct: 614 gcccgcgcatggtgccccg 632



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>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06,
             complete sequence
          Length = 136143

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    ccgtccccgccggccggcg 116
             |||||||||||||||||||
Sbjct: 59620 ccgtccccgccggccggcg 59638



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>ref|XM_878464.1| PREDICTED: Bos taurus insulin-like growth factor-binding protein 5,
           transcript variant 2 (IGFBP5), mRNA
          Length = 1386

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gcccgcgcatggtgccccg 100
           |||||||||||||||||||
Sbjct: 880 gcccgcgcatggtgccccg 898



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>ref|XM_600908.2| PREDICTED: Bos taurus insulin-like growth factor-binding protein 5,
           transcript variant 1 (IGFBP5), mRNA
          Length = 1376

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gcccgcgcatggtgccccg 100
           |||||||||||||||||||
Sbjct: 868 gcccgcgcatggtgccccg 886



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>gb|U41340.2|SSU41340 Sus scrofa insulin-like growth factor binding protein-5 (IGFBP5)
           mRNA, complete cds
          Length = 966

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gcccgcgcatggtgccccg 100
           |||||||||||||||||||
Sbjct: 614 gcccgcgcatggtgccccg 632



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>gb|AC078852.5| Homo sapiens BAC clone RP11-386I15 from 4, complete sequence
          Length = 86981

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    ctgctggtcctcctctgcc 84
             |||||||||||||||||||
Sbjct: 79018 ctgctggtcctcctctgcc 79036



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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 96     ccccgtccccgccggccgg 114
              |||||||||||||||||||
Sbjct: 134309 ccccgtccccgccggccgg 134291



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 98       ccgtccccgccggccggcg 116
                |||||||||||||||||||
Sbjct: 17682862 ccgtccccgccggccggcg 17682880



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     tctgcccgcgcatggtgcc 97
              |||||||||||||||||||
Sbjct: 126882 tctgcccgcgcatggtgcc 126900



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>dbj|AK108862.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B10, full
           insert sequence
          Length = 1079

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 98  ccgtccccgccggccggcg 116
           |||||||||||||||||||
Sbjct: 315 ccgtccccgccggccggcg 297



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>gb|DQ320122.1| Sus scrofa insulin-like growth factor binding protein-5 (IGFBP-5)
           gene, exons 2 through 4 and partial cds
          Length = 2342

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gcccgcgcatggtgccccg 100
           |||||||||||||||||||
Sbjct: 572 gcccgcgcatggtgccccg 590



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>emb|X05921.1|OCDHPR Rabbit mRNA for dihydropyridine (DHP) receptor (from skeletal muscle)
          Length = 6083

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   ggtcctcctctgcccgcgc 89
            |||||||||||||||||||
Sbjct: 5493 ggtcctcctctgcccgcgc 5475



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>gb|M23919.1|RABALP1A Rabbit dihydropyridine-sensitive calcium channel alpha-1 subunit
            mRNA, complete cds
          Length = 6080

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   ggtcctcctctgcccgcgc 89
            |||||||||||||||||||
Sbjct: 5493 ggtcctcctctgcccgcgc 5475


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 772,537
Number of Sequences: 3902068
Number of extensions: 772537
Number of successful extensions: 97369
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97277
Number of HSP's gapped (non-prelim): 92
length of query: 116
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 95
effective length of database: 17,151,101,840
effective search space: 1629354674800
effective search space used: 1629354674800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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