ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet102h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secret... 29 2.4
2GPR45_HUMAN (Q9Y5Y3) Probable G-protein coupled receptor 45 (PSP... 28 5.4
3GPR45_MOUSE (Q9EQQ4) Probable G-protein coupled receptor 45 (PSP... 28 5.4
4ACM1_RAT (P08482) Muscarinic acetylcholine receptor M1 28 7.1
5ACM1_MOUSE (P12657) Muscarinic acetylcholine receptor M1 28 7.1
6ACM1_PIG (P04761) Muscarinic acetylcholine receptor M1 27 9.3
7ACM1_MACMU (P56489) Muscarinic acetylcholine receptor M1 27 9.3
8ACM1_HUMAN (P11229) Muscarinic acetylcholine receptor M1 27 9.3

>CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secreted dorsalizing|
           factor)
          Length = 941

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 120 CASPLLLSRSCCCTC-ASPLPNLSTSD 43
           CA+P+LL   CC TC  +P P +  SD
Sbjct: 102 CANPILLPLHCCKTCPKAPPPPIKKSD 128



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>GPR45_HUMAN (Q9Y5Y3) Probable G-protein coupled receptor 45 (PSP24-alpha)|
           (PSP24-1)
          Length = 372

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 145 PTRSTARRLCLAIAAFSQLLLHLC---FTASEPLNERW 41
           P   +A  L LA  AFS ++L LC   FTA   +  RW
Sbjct: 63  PAMRSAINLLLATLAFSDIMLSLCCMPFTAVTLITVRW 100



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>GPR45_MOUSE (Q9EQQ4) Probable G-protein coupled receptor 45 (PSP24-alpha)|
           (PSP24-1)
          Length = 373

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 145 PTRSTARRLCLAIAAFSQLLLHLC---FTASEPLNERW 41
           P   +A  L LA  AFS ++L LC   FTA   +  RW
Sbjct: 63  PAMRSAINLLLATLAFSDIMLSLCCMPFTAITLITVRW 100



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>ACM1_RAT (P08482) Muscarinic acetylcholine receptor M1|
          Length = 460

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 197 EAPASSGREAEAGGREQPDEEHGKEAVPRHCC 102
           E P   G  + +  R QP  E   E+ P  CC
Sbjct: 229 ETPGKGGGSSSSSERSQPGAEGSPESPPGRCC 260



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>ACM1_MOUSE (P12657) Muscarinic acetylcholine receptor M1|
          Length = 460

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 197 EAPASSGREAEAGGREQPDEEHGKEAVPRHCC 102
           E P   G  + +  R QP  E   E+ P  CC
Sbjct: 229 ETPGKGGGSSSSSERSQPGAEGSPESPPGRCC 260



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>ACM1_PIG (P04761) Muscarinic acetylcholine receptor M1|
          Length = 460

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 197 EAPASSGREAEAGGREQPDEEHGKEAVPRHCC 102
           E P   G  + +  R QP  E   E  P  CC
Sbjct: 229 ETPGKGGGSSSSSERSQPGAEGSPETPPGRCC 260



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>ACM1_MACMU (P56489) Muscarinic acetylcholine receptor M1|
          Length = 460

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 197 EAPASSGREAEAGGREQPDEEHGKEAVPRHCC 102
           E P   G  + +  R QP  E   E  P  CC
Sbjct: 229 ETPGKGGGSSSSSERSQPGAEGSPETPPGRCC 260



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>ACM1_HUMAN (P11229) Muscarinic acetylcholine receptor M1|
          Length = 460

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 197 EAPASSGREAEAGGREQPDEEHGKEAVPRHCC 102
           E P   G  + +  R QP  E   E  P  CC
Sbjct: 229 ETPGKGGGSSSSSERSQPGAEGSPETPPGRCC 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,680,775
Number of Sequences: 219361
Number of extensions: 319044
Number of successful extensions: 1227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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