ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet102g10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF498269.1| Haynaldia villosa clone kong32 mRNA Length = 1219 Score = 408 bits (206), Expect = e-111 Identities = 256/274 (93%), Gaps = 9/274 (3%) Strand = Plus / Plus Query: 80 aaatggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccgcgatcgcca 139 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 690 aaatggctaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccgccatcgcca 749 Query: 140 ggccgcaggccctaggtctgccccagctgaggacgaggggcgagagggtgaggtgcagct 199 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 750 ggccgcaggccctaggtctgccccagctgaggacgaggagcgagagggtgaggtgcagct 809 Query: 200 actccaagga---------ggcgacccctgccgccgccgcccgtggcgccggcgcgtccc 250 |||||||||| ||||||||| || ||||||| ||| || ||||||||||||| Sbjct: 810 actccaaggacgccaaggaggcgaccccggcggccgccgtccgcggggccggcgcgtccc 869 Query: 251 tgctcgccgcggcgggcgcggtgaccgcgtccgcggagccggcgctcgctctggtcgacg 310 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 870 tgctcgccgcggcgggcgcggtgaccgcgtccgcggggccggcgctcgctctggtcgacg 929 Query: 311 agcggatgtcgacggagggcaccgggctcagcct 344 |||||||||||||||||||||||||||||||||| Sbjct: 930 agcggatgtcgacggagggcaccgggctcagcct 963 Score = 73.8 bits (37), Expect = 3e-10 Identities = 46/48 (95%), Gaps = 2/48 (4%) Strand = Plus / Plus Query: 23 cccgagcaagccacactctccagcaccagcagcggccggcggcaagca 70 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 628 cccgagcaagccacactctccagcaccagca--ggccggcggcaagca 673
>gb|AY103930.1| Zea mays PCO070877 mRNA sequence Length = 829 Score = 115 bits (58), Expect = 1e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 235 ggcgccggcgcgtccctgctcgccgcggcgggcgcggtgaccgcgtccgcggagccggcg 294 ||||| |||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 304 ggcgcaggcgcgtcgctgctcgccgcagcgggcgcggtgaccgcgtcggcggggcccgcg 363 Query: 295 ctcgctctggtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 || || || || |||||||| ||||| ||||||||||||||||| ||||| Sbjct: 364 ctggcgctcgtggacgagcgcatgtccacggagggcaccgggctgagcct 413 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccgcgatcgccagg 141 ||||||||| |||||||||||| || ||||||| |||| ||||| ||||||||||||||| Sbjct: 142 atggccaccgtcagcgccgccgtggtgaccaccatcgttgcccgcgccgcgatcgccagg 201 Query: 142 cc 143 || Sbjct: 202 cc 203 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 165 gctgaggacgaggggcgagagggtgaggtgcagctactccaaggaggcgacccc 218 ||||||| ||||| ||||||||||| ||||||||||| ||||||| ||| |||| Sbjct: 237 gctgagggcgaggagcgagagggtgcggtgcagctacgccaaggacgcggcccc 290
>gb|AY112348.1| Zea mays CL5838_2 mRNA sequence Length = 670 Score = 81.8 bits (41), Expect = 1e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 292 gcgctcgctctggtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 318 gcgctggcgctggtggacgagcggatgtcgacggagggcaccgggctcagcct 370
>ref|NM_191445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 480 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 304 gtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 200 gtcgacgagaggatgtcgacggagggcaccgggctcagcct 240 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 130 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 1 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 49 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactccaaggaggcg 213 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 79 gaggagcgagagggtgaggtgcaactactccaaggaggcg 118
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 304 gtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32702151 gtcgacgagaggatgtcgacggagggcaccgggctcagcct 32702111 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 130 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 32702470 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 32702422 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 174 gaggggcgagagggtgaggtgcagctactccaaggaggcg 213 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 32702272 gaggagcgagagggtgaggtgcaactactccaaggaggcg 32702233
>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0490D09 Length = 154430 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 304 gtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 64946 gtcgacgagaggatgtcgacggagggcaccgggctcagcct 64906 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 130 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 65265 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 65217 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 174 gaggggcgagagggtgaggtgcagctactccaaggaggcg 213 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 65067 gaggagcgagagggtgaggtgcaactactccaaggaggcg 65028
>dbj|AK119225.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H08, full insert sequence Length = 1475 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 304 gtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1135 gtcgacgagaggatgtcgacggagggcaccgggctcagcct 1175 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 130 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 925 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 973 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactccaaggaggcg 213 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 1014 gaggagcgagagggtgaggtgcaactactccaaggaggcg 1053
>dbj|AK119161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D04, full insert sequence Length = 639 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 304 gtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 278 gtcgacgagaggatgtcgacggagggcaccgggctcagcct 318 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 130 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 68 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 116 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactccaaggaggcg 213 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 157 gaggagcgagagggtgaggtgcaactactccaaggaggcg 196
>dbj|AK060476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F04, full insert sequence Length = 522 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 304 gtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 282 gtcgacgagaggatgtcgacggagggcaccgggctcagcct 322 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 130 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 72 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 120 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactccaaggaggcg 213 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 161 gaggagcgagagggtgaggtgcaactactccaaggaggcg 200
>dbj|AK060438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-D03, full insert sequence Length = 635 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 304 gtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 282 gtcgacgagaggatgtcgacggagggcaccgggctcagcct 322 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 82 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 130 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 72 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 120 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactccaaggaggcg 213 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 161 gaggagcgagagggtgaggtgcaactactccaaggaggcg 200
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 301 ctggtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct: 62664 ctggtggacgagcggatgtcgacggaggggaccgggctgagcct 62707 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactcc 204 |||||| ||||||||||||||| |||||||| Sbjct: 62525 gaggggtgagagggtgaggtgcggctactcc 62555
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 301 ctggtcgacgagcggatgtcgacggagggcaccgggctcagcct 344 ||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct: 24993811 ctggtggacgagcggatgtcgacggaggggaccgggctgagcct 24993854 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactcc 204 |||||| ||||||||||||||| |||||||| Sbjct: 24993672 gaggggtgagagggtgaggtgcggctactcc 24993702 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 acccctgccgccgccgcccg 233 |||||||||||||||||||| Sbjct: 20052948 acccctgccgccgccgcccg 20052967
>ref|XM_475670.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 375 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactcc 204 |||||| ||||||||||||||| |||||||| Sbjct: 81 gaggggtgagagggtgaggtgcggctactcc 111
>dbj|AK066345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064H24, full insert sequence Length = 741 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Plus Query: 174 gaggggcgagagggtgaggtgcagctactcc 204 |||||| ||||||||||||||| |||||||| Sbjct: 165 gaggggtgagagggtgaggtgcggctactcc 195
>gb|AY549197.1| Streptomyces tubercidicus ferredoxin (fdEA), ferredoxin reductase (freEA), and cytochrome P450 monooxygenase CYP147C1 (cypEA) genes, complete cds Length = 6486 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 102 cgcggcgaccaccgtcgtcgcc 123 |||||||||||||||||||||| Sbjct: 6182 cgcggcgaccaccgtcgtcgcc 6203
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 238 gccggcgcgtccctgctcgccg 259 |||||||||||||||||||||| Sbjct: 172166 gccggcgcgtccctgctcgccg 172145
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 gggcgcggtgaccgcgtccgcg 285 |||||||||||||||||||||| Sbjct: 152123 gggcgcggtgaccgcgtccgcg 152144
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 ccaagcaagacccgagcaagcc 34 |||||||||||||||||||||| Sbjct: 4433902 ccaagcaagacccgagcaagcc 4433923 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 tcagcgccgccgcggcgacca 112 ||||||||||||||||||||| Sbjct: 3277676 tcagcgccgccgcggcgacca 3277696 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 gcgccgccgcggcgaccacc 114 |||||||||||||||||||| Sbjct: 3465947 gcgccgccgcggcgaccacc 3465928
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 gggcgcggtgaccgcgtccgcg 285 |||||||||||||||||||||| Sbjct: 7026865 gggcgcggtgaccgcgtccgcg 7026886 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 ctctccagcaccagcagcggc 58 ||||||||||||||||||||| Sbjct: 19246388 ctctccagcaccagcagcggc 19246368 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 gcgccgccgcggcgaccaccg 115 ||||||||||||||||||||| Sbjct: 3350956 gcgccgccgcggcgaccaccg 3350936 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ccaccatcagcgccgccgcggcga 109 |||||| ||||||||||||||||| Sbjct: 14977085 ccaccaccagcgccgccgcggcga 14977062
>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster, complete sequence Length = 49461 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 259 gcggcgggcgcggtgaccgcgt 280 |||||||||||||||||||||| Sbjct: 26975 gcggcgggcgcggtgaccgcgt 26954
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 gggcgcggtgaccgcgtccgcg 285 |||||||||||||||||||||| Sbjct: 7093332 gggcgcggtgaccgcgtccgcg 7093353 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 ctctccagcaccagcagcggc 58 ||||||||||||||||||||| Sbjct: 19405937 ctctccagcaccagcagcggc 19405917 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 gcgccgccgcggcgaccaccg 115 ||||||||||||||||||||| Sbjct: 3359661 gcgccgccgcggcgaccaccg 3359641 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ccaccatcagcgccgccgcggcga 109 |||||| ||||||||||||||||| Sbjct: 15058780 ccaccaccagcgccgccgcggcga 15058757
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 tgctcgccgcggcgggcgcgg 271 ||||||||||||||||||||| Sbjct: 2045780 tgctcgccgcggcgggcgcgg 2045760
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 gcgccgccgcggcgaccaccg 115 ||||||||||||||||||||| Sbjct: 63338 gcgccgccgcggcgaccaccg 63358
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16, complete sequence Length = 175425 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 ctctccagcaccagcagcggc 58 ||||||||||||||||||||| Sbjct: 115176 ctctccagcaccagcagcggc 115156
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 238 gccggcgcgtccctgctcgccgcggcggg 266 |||| |||| ||||||||||||||||||| Sbjct: 3027983 gccgacgcgaccctgctcgccgcggcggg 3028011
>gb|AY639949.1| Comamonas sp. JS46 mnb locus, partial sequence Length = 9155 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 tgccgccgccgcccgtggcgccggc 243 |||||||| |||||||||||||||| Sbjct: 4752 tgccgccggcgcccgtggcgccggc 4728
>gb|AF512431.1| Saccharothrix mutabilis subsp. capreolus nonribosomal peptide synthetase gene cluster, partial sequence Length = 28890 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 tccagcaccagcagcggccgg 61 ||||||||||||||||||||| Sbjct: 24378 tccagcaccagcagcggccgg 24358
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 cctgccgccgccgcccgtggc 237 ||||||||||||||||||||| Sbjct: 3802830 cctgccgccgccgcccgtggc 3802850
>dbj|AK107512.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E12, full insert sequence Length = 1901 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 gcgccgccgcggcgaccaccg 115 ||||||||||||||||||||| Sbjct: 331 gcgccgccgcggcgaccaccg 351
>gb|AF076784.1|AF076784 Oryctolagus cuniculus serum amyloid A-activating factor SAF-1 mRNA, complete cds Length = 2535 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 96 cgccgccgcggcgaccaccgtcgtcgccc 124 |||||||||||| ||| |||||||||||| Sbjct: 487 cgccgccgcggccaccgccgtcgtcgccc 515
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 ctgctcgccgcggcgggcgcg 270 ||||||||||||||||||||| Sbjct: 1421369 ctgctcgccgcggcgggcgcg 1421389 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 cggcgggcgcggtgaccgcgt 280 ||||||||||||||||||||| Sbjct: 912911 cggcgggcgcggtgaccgcgt 912931 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tctggtcgacgagcggatgt 319 |||||||||||||||||||| Sbjct: 1315316 tctggtcgacgagcggatgt 1315335
>gb|AY754866.1| Zea mays INDETERMINATE-related protein 9 mRNA, complete cds Length = 2383 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 ctgccgccgccgcccgtggcgccg 241 |||||||||||| ||||||||||| Sbjct: 903 ctgccgccgccggccgtggcgccg 880
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccaccatcagcgccgccgcg 105 |||||||||||||||||||| Sbjct: 45575 ccaccatcagcgccgccgcg 45556
>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0018F16.3), mRNA Length = 2157 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 cgccgccgcggcgaccaccgtcgtcgcc 123 ||||||||||| | |||||||||||||| Sbjct: 324 cgccgccgcggaggccaccgtcgtcgcc 351
>ref|NM_195907.1| Oryza sativa (japonica cultivar-group) putative vacuolar sorting receptor protein (OSJNBb0078C13.14), mRNA Length = 1932 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ccaccatcagcgccgccgcggcga 109 ||||||||| |||||||||||||| Sbjct: 73 ccaccatcaccgccgccgcggcga 50
>ref|NM_186617.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2691 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 caaggaggcgacccctgccgccgccgcc 231 ||||||||||||| | |||||||||||| Sbjct: 658 caaggaggcgaccgccgccgccgccgcc 685
>ref|XM_477083.1| Oryza sativa (japonica cultivar-group), mRNA Length = 831 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 gccgcggcgggcgcggtgaccgcg 279 |||||||||||||||| ||||||| Sbjct: 65 gccgcggcgggcgcggcgaccgcg 88
>gb|BT016723.1| Zea mays clone Contig556 mRNA sequence Length = 1476 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cggtgaccgcgtccgcggag 288 |||||||||||||||||||| Sbjct: 214 cggtgaccgcgtccgcggag 195
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 acccctgccgccgccgcccg 233 |||||||||||||||||||| Sbjct: 51273 acccctgccgccgccgcccg 51292
>ref|XM_881821.1| PREDICTED: Bos taurus similar to Y4C6B.5, transcript variant 2 (LOC511097), mRNA Length = 3516 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 ccagcaccagcagcggccggcggc 65 |||||||||||||||| ||||||| Sbjct: 358 ccagcaccagcagcgggcggcggc 335
>ref|XM_588367.2| PREDICTED: Bos taurus similar to Y4C6B.5, transcript variant 1 (LOC511097), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 ccagcaccagcagcggccggcggc 65 |||||||||||||||| ||||||| Sbjct: 358 ccagcaccagcagcgggcggcggc 335
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 agctgaggacgaggggcgag 183 |||||||||||||||||||| Sbjct: 1683389 agctgaggacgaggggcgag 1683370
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cgccgcggcgggcgcggtga 274 |||||||||||||||||||| Sbjct: 226046 cgccgcggcgggcgcggtga 226065
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0071K13, complete sequence Length = 176150 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ccaccatcagcgccgccgcggcga 109 |||||| ||||||||||||||||| Sbjct: 86872 ccaccaccagcgccgccgcggcga 86849
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccaccatcagcgccgccgcg 105 |||||||||||||||||||| Sbjct: 308125 ccaccatcagcgccgccgcg 308106
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 111 caccgtcgtcgcccgtgccgcgatcgccaggc 142 ||||||||||||| | |||||||||| ||||| Sbjct: 2294086 caccgtcgtcgccagcgccgcgatcggcaggc 2294117 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ccgccgccgcccgtggcgcc 240 |||||||||||||||||||| Sbjct: 1107608 ccgccgccgcccgtggcgcc 1107589
>emb|Z98741.1|MLCB22 Mycobacterium leprae cosmid B22 Length = 40281 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 cgccgcggcgaccaccgtcg 118 |||||||||||||||||||| Sbjct: 24036 cgccgcggcgaccaccgtcg 24055
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ccaccgtcgtcgcccgtgcc 129 |||||||||||||||||||| Sbjct: 1975471 ccaccgtcgtcgcccgtgcc 1975490 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 ccgcggcgggcgcggtgacc 276 |||||||||||||||||||| Sbjct: 1480966 ccgcggcgggcgcggtgacc 1480985
>emb|X66793.1|AERPONG A.eutrophus rpoN gene for sigma factor 54 Length = 3720 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 gccgccgccgcccgtggcgccggc 243 |||||||| ||||||||||||||| Sbjct: 166 gccgccgctgcccgtggcgccggc 143
>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0078C13, complete sequence Length = 140553 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ccaccatcagcgccgccgcggcga 109 ||||||||| |||||||||||||| Sbjct: 130885 ccaccatcaccgccgccgcggcga 130862
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 acccctgccgccgccgcccgtggcgccg 241 ||||||||||||||| |||||| ||||| Sbjct: 22843 acccctgccgccgccccccgtgccgccg 22816
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgcgtccctgctcgccgcgg 262 |||||||||||||||||||| Sbjct: 164826 cgcgtccctgctcgccgcgg 164807
>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10 Length = 348450 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccgcggcgaccaccgtcg 118 |||||||||||||||||||| Sbjct: 11386 cgccgcggcgaccaccgtcg 11367
>emb|BX511117.4| Mouse DNA sequence from clone RP23-143C1 on chromosome 11 Contains a basic transcription factor 3 (Btf3) pseudogene, complete sequence Length = 72981 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 agcaagccacactctccagcacca 50 |||||||||||||||||| ||||| Sbjct: 51098 agcaagccacactctccatcacca 51075
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 aggggcgagagggtgaggtgcagc 198 |||||| ||||||||||||||||| Sbjct: 1542484 aggggctagagggtgaggtgcagc 1542461
>gb|AE005918.1| Caulobacter crescentus CB15 section 244 of 359 of the complete genome Length = 14873 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccaccatcagcgccgccgcg 105 |||||||||||||||||||| Sbjct: 4917 ccaccatcagcgccgccgcg 4936
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 cgccgccgcggcgaccaccgtcgtcgcc 123 ||||||||||| | |||||||||||||| Sbjct: 40730 cgccgccgcggaggccaccgtcgtcgcc 40757
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cccctgccgccgccgcccgt 234 |||||||||||||||||||| Sbjct: 1640260 cccctgccgccgccgcccgt 1640241
>gb|AC116608.1| Papio hamadryas chromosome , clone RP41-155I24, complete sequence Length = 161654 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgtcgacggagggcaccggg 336 |||||||||||||||||||| Sbjct: 20148 tgtcgacggagggcaccggg 20167
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tcagcgccgccgcggcgacc 111 |||||||||||||||||||| Sbjct: 3137251 tcagcgccgccgcggcgacc 3137270
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ccaccatcagcgccgccgcggcga 109 ||||||||| |||||||||||||| Sbjct: 135549 ccaccatcaccgccgccgcggcga 135572
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 cgccgccgcggcgaccaccgtcgtcgcc 123 ||||||||||| | |||||||||||||| Sbjct: 16161841 cgccgccgcggaggccaccgtcgtcgcc 16161868 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ccaccatcagcgccgccgcggcga 109 ||||||||| |||||||||||||| Sbjct: 9903070 ccaccatcaccgccgccgcggcga 9903093
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccatcagcgccgccgcggcg 108 |||||||||||||||||||| Sbjct: 13704950 ccatcagcgccgccgcggcg 13704931
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 caaggaggcgacccctgccgccgccgcc 231 ||||||||||||| | |||||||||||| Sbjct: 6785292 caaggaggcgaccgccgccgccgccgcc 6785265 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 gccgcggcgggcgcggtgaccgcg 279 |||||||||||||||| ||||||| Sbjct: 5819431 gccgcggcgggcgcggcgaccgcg 5819454
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 gccgcggcgggcgcggtgaccgcg 279 |||||||||||||||| ||||||| Sbjct: 126459 gccgcggcgggcgcggcgaccgcg 126482
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cgaggggcgagagggtgagg 192 |||||||||||||||||||| Sbjct: 83786 cgaggggcgagagggtgagg 83805
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gcgccggcgcgtccctgctc 255 |||||||||||||||||||| Sbjct: 7485076 gcgccggcgcgtccctgctc 7485095
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0592C06 Length = 160071 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 caaggaggcgacccctgccgccgccgcc 231 ||||||||||||| | |||||||||||| Sbjct: 79426 caaggaggcgaccgccgccgccgccgcc 79399
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1040D06 Length = 155034 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccatcagcgccgccgcggcg 108 |||||||||||||||||||| Sbjct: 103064 ccatcagcgccgccgcggcg 103045
>ref|XM_319930.2| Anopheles gambiae str. PEST ENSANGP00000016732 (ENSANGG00000014243), partial mRNA Length = 3498 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 215 cccctgccgccgccgcccgtggcgccgg 242 ||||||||||| ||||||||| |||||| Sbjct: 2932 cccctgccgccaccgcccgtgccgccgg 2959
>dbj|AK107502.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E02, full insert sequence Length = 2691 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 caaggaggcgacccctgccgccgccgcc 231 ||||||||||||| | |||||||||||| Sbjct: 658 caaggaggcgaccgccgccgccgccgcc 685
>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full insert sequence Length = 2290 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 cgccgccgcggcgaccaccgtcgtcgcc 123 ||||||||||| | |||||||||||||| Sbjct: 427 cgccgccgcggaggccaccgtcgtcgcc 454
>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full insert sequence Length = 2230 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 cgccgccgcggcgaccaccgtcgtcgcc 123 ||||||||||| | |||||||||||||| Sbjct: 367 cgccgccgcggaggccaccgtcgtcgcc 394
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 tgccgccgccgcccgtggcg 238 |||||||||||||||||||| Sbjct: 1186842 tgccgccgccgcccgtggcg 1186823
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ggccaccatcagcgccgccg 103 |||||||||||||||||||| Sbjct: 2021385 ggccaccatcagcgccgccg 2021404
>gb|BT023966.1| Zea mays clone EL01N0404H03 mRNA sequence Length = 1926 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 ctgccgccgccgcccgtggcgccg 241 |||||||||||| ||||||||||| Sbjct: 495 ctgccgccgccggccgtggcgccg 472
>gb|AF009336.1|AF009336 Streptomyces coelicolor lipase (lipA), and LipR activator (lipR) genes, complete cds Length = 6286 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgcgtccctgctcgccgcgg 262 |||||||||||||||||||| Sbjct: 3445 cgcgtccctgctcgccgcgg 3464
>dbj|AK061020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-C09, full insert sequence Length = 1497 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 acccctgccgccgccgcccg 233 |||||||||||||||||||| Sbjct: 1035 acccctgccgccgccgcccg 1016
>dbj|AK058277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C06, full insert sequence Length = 1571 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 acccctgccgccgccgcccg 233 |||||||||||||||||||| Sbjct: 181 acccctgccgccgccgcccg 200
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccgtcgtcgcccgtgccgcg 132 |||||||||||||||||||| Sbjct: 2513621 ccgtcgtcgcccgtgccgcg 2513602 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cctgctcgccgcggcgggcg 268 |||||||||||||||||||| Sbjct: 343629 cctgctcgccgcggcgggcg 343648
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 ggcgcgtccctgctcgccgcggcg 264 |||||||||||||||| ||||||| Sbjct: 1266792 ggcgcgtccctgctcgtcgcggcg 1266769
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 cgccgccgcggcgaccaccgtcgtcgcc 123 ||||||||||| | |||||||||||||| Sbjct: 16170082 cgccgccgcggaggccaccgtcgtcgcc 16170109 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ccaccatcagcgccgccgcggcga 109 ||||||||| |||||||||||||| Sbjct: 9909109 ccaccatcaccgccgccgcggcga 9909132
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 cccctgccgccgccgcccgt 234 |||||||||||||||||||| Sbjct: 2676526 cccctgccgccgccgcccgt 2676545
>dbj|AP001099.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-883A18, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 agccacactctccagcacca 50 |||||||||||||||||||| Sbjct: 109361 agccacactctccagcacca 109342 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,044,595 Number of Sequences: 3902068 Number of extensions: 3044595 Number of successful extensions: 93837 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89074 Number of HSP's gapped (non-prelim): 4762 length of query: 344 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 322 effective length of database: 17,147,199,772 effective search space: 5521398326584 effective search space used: 5521398326584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
