Clone Information

BLAST Search Result

Clone Name	baet102g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	XAB2_RAT (Q99PK0) XPA-binding protein 2 (Adapter protein ATH-55)	165	2e-41
2	XAB2_MOUSE (Q9DCD2) XPA-binding protein 2	165	2e-41
3	XAB2_HUMAN (Q9HCS7) XPA-binding protein 2 (HCNP protein)	163	8e-41
4	SYF1_CRYNE (Q5KH46) Pre-mRNA-splicing factor SYF1	151	4e-37
5	SYF1_SCHPO (Q9P7R9) Pre-mRNA-splicing factor syf1 (Complexed wit...	145	2e-35
6	SYF1_USTMA (Q4P7S1) Pre-mRNA-splicing factor SYF1	143	1e-34
7	SYF1_NEUCR (Q7SAK5) Pre-mRNA-splicing factor syf-1	137	6e-33
8	SYF1_ASPFU (Q4WVF4) Pre-mRNA-splicing factor syf1	136	1e-32
9	SYF1_MAGGR (Q52DF3) Pre-mRNA-splicing factor SYF1	134	5e-32
10	SYF1_EMENI (Q5BH69) Pre-mRNA-splicing factor syf1	132	2e-31
11	SYF1_YARLI (Q6CAR6) Pre-mRNA-splicing factor SYF1	105	4e-23
12	SYF1_ASHGO (Q75EF0) Pre-mRNA-splicing factor SYF1	73	2e-13
13	SYF1_DEBHA (Q6BQ23) Pre-mRNA-splicing factor SYF1	71	7e-13
14	SYF1_CANGA (Q6FUJ7) Pre-mRNA-splicing factor SYF1	57	1e-08
15	SYF1_YEAST (Q04048) Pre-mRNA-splicing factor SYF1 (Synthetic let...	55	6e-08
16	CRNL1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck hom...	50	1e-06
17	CRNL1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck h...	50	1e-06
18	SYF1_KLULA (Q6CYA2) Pre-mRNA-splicing factor SYF1	49	3e-06
19	CRNL1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck h...	47	2e-05
20	CRN_DROME (P17886) Protein crooked neck	39	0.002
21	NPHP3_XENLA (Q6AZT7) Nephrocystin-3	37	0.009
22	CLF1_YARLI (Q6C186) Pre-mRNA-splicing factor CLF1	37	0.009
23	CLF1_NEUCR (Q7SGD2) Pre-mRNA-splicing factor clf-1	37	0.016
24	CLF1_CRYNV (Q9HF03) Pre-mRNA-splicing factor CLF1 (crooked-neck-...	36	0.020
25	CLF1_KLULA (Q6CJK2) Pre-mRNA-splicing factor CLF1	36	0.020
26	CLF1_CRYNE (Q5KNE9) Pre-mRNA-splicing factor CLF1	36	0.020
27	CLF1_MAGGR (Q527H0) Pre-mRNA-splicing factor CLF1	33	0.13
28	NPHP3_MOUSE (Q7TNH6) Nephrocystin-3	33	0.22
29	PRPU_HUMAN (O94906) U5 snRNP-associated 102 kDa protein (U5-102 ...	33	0.22
30	CLF1_USTMA (Q4PB37) Pre-mRNA-splicing factor CLF1	33	0.22
31	NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplas...	33	0.22
32	CLF1_EMENI (Q5BDX1) Pre-mRNA-splicing factor clf1	32	0.38
33	TRPA_IDILO (Q5QX79) Tryptophan synthase alpha chain (EC 4.2.1.20)	32	0.38
34	NPHP3_HUMAN (Q7Z494) Nephrocystin-3	32	0.50
35	CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1	31	0.65
36	RNA14_YEAST (P25298) mRNA 3'-end processing protein RNA14	31	0.65
37	PRPU_MOUSE (Q91YR7) U5 snRNP-associated 102 kDa protein (U5-102 ...	31	0.85
38	SUF_DROME (P25991) Protein suppressor of forked	29	2.5
39	HTPG_YERPS (Q66DP8) Chaperone protein htpG (Heat shock protein h...	29	3.2
40	HTPG_YERPE (P58482) Chaperone protein htpG (Heat shock protein h...	29	3.2
41	PEX5_PICAN (Q01495) Peroxisomal targeting signal receptor (Perox...	29	3.2
42	MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplas...	29	3.2
43	CP2R1_HUMAN (Q6VVX0) Cytochrome P450 2R1 (EC 1.14.14.-) (Vitamin...	28	4.2
44	CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1	28	4.2
45	Y1625_METJA (Q59020) Hypothetical protein MJ1625	28	4.2
46	BXEN_CLOBU (Q06366) Botulinum neurotoxin type E, nontoxic component	28	4.2
47	BXEN_CLOBO (P46082) Botulinum neurotoxin type E, nontoxic component	28	4.2
48	GAL1_KLULA (P09608) Galactokinase (EC 2.7.1.6) (Galactose kinase)	28	5.5
49	PGMP_PEA (Q9SM59) Phosphoglucomutase, chloroplast precursor (EC ...	28	5.5
50	RPC1_PLAFA (P27625) DNA-directed RNA polymerase III largest subu...	28	5.5
51	APBB3_MOUSE (Q8R1C9) Amyloid beta A4 precursor protein-binding f...	28	5.5
52	IE68_SHV21 (Q01042) Immediate-early protein	28	5.5
53	GCY_ARBPU (P11528) Resact receptor precursor (Guanylate cyclase)...	28	7.2
54	APBB3_RAT (O35827) Amyloid beta A4 precursor protein-binding fam...	28	7.2
55	TRMU_UREPA (Q9PQ88) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	7.2
56	CLF1_ASHGO (Q750X3) Pre-mRNA-splicing factor CLF1	27	9.4
57	RNH2_PYRFU (Q8U036) Ribonuclease HII (EC 3.1.26.4) (RNase HII)	27	9.4

>XAB2_RAT (Q99PK0) XPA-binding protein 2 (Adapter protein ATH-55)|
          Length = 855

 Score =  165 bits (418), Expect = 2e-41
 Identities = 75/119 (63%), Positives = 99/119 (83%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           + ++T+AVY+RILDLRIATPQI++NYA  LEE+KYFE++FK YERG+ +FK+P+V DIW 
Sbjct: 499 TFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           TYLTKF++RY   KLERAR+LF +A++  PP   K LYL YA+LEE++GLA+ AM VYD
Sbjct: 559 TYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYD 617

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>XAB2_MOUSE (Q9DCD2) XPA-binding protein 2|
          Length = 855

 Score =  165 bits (418), Expect = 2e-41
 Identities = 75/119 (63%), Positives = 99/119 (83%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           + ++T+AVY+RILDLRIATPQI++NYA  LEE+KYFE++FK YERG+ +FK+P+V DIW 
Sbjct: 499 TFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           TYLTKF++RY   KLERAR+LF +A++  PP   K LYL YA+LEE++GLA+ AM VYD
Sbjct: 559 TYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYD 617

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>XAB2_HUMAN (Q9HCS7) XPA-binding protein 2 (HCNP protein)|
          Length = 855

 Score =  163 bits (413), Expect = 8e-41
 Identities = 74/119 (62%), Positives = 98/119 (82%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           + ++T+AVY+RILDLRIATPQI++NYA  LEE+KYFE++FK YERG+ +FK+P+V DIW 
Sbjct: 499 TFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           TYLTKF+ RY   KLERAR+LF +A++  PP   K LYL YA+LEE++GLA+ AM VY+
Sbjct: 559 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYE 617

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>SYF1_CRYNE (Q5KH46) Pre-mRNA-splicing factor SYF1|
          Length = 1031

 Score =  151 bits (381), Expect = 4e-37
 Identities = 70/119 (58%), Positives = 95/119 (79%)
 Frame = +1

Query: 1    SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
            ++E+T+AVY++I++L+IA  Q+I+NYA  LEENKYFE++FKVYERG+++F +P   +IW 
Sbjct: 701  TVESTKAVYDKIMELKIANAQVIVNYATFLEENKYFEESFKVYERGIELFHFPIAFEIWN 760

Query: 181  TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
             YL+KFV RY   KLERAR+LF +A+E  P    K LYL YAKLEE++GLAKRAM +YD
Sbjct: 761  IYLSKFVKRYGGKKLERARDLFEQALENCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYD 819

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>SYF1_SCHPO (Q9P7R9) Pre-mRNA-splicing factor syf1 (Complexed with cdc5 protein|
           3) (Cell cycle control protein cwf3)
          Length = 790

 Score =  145 bits (367), Expect = 2e-35
 Identities = 64/119 (53%), Positives = 92/119 (77%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           ++ETTR +Y+R+ +L+IATPQ+++NYA LLEEN YFED+FK+YERGV +F YP   ++W 
Sbjct: 495 TIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVAFELWN 554

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
            YLTKFV RYQ + +ER R+LF +A+E  PP   K++YL YA  EE +G AKR++++ +
Sbjct: 555 LYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKRSISILE 613

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>SYF1_USTMA (Q4P7S1) Pre-mRNA-splicing factor SYF1|
          Length = 1081

 Score =  143 bits (360), Expect = 1e-34
 Identities = 66/118 (55%), Positives = 93/118 (78%)
 Frame = +1

Query: 4    LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 183
            +E+T+ VYE++L+L+IA+ QII+NYA  LE+NKYFE++FKV+ERGV++F YP   +IW  
Sbjct: 749  VESTKRVYEKMLELKIASAQIIINYAAFLEDNKYFEESFKVFERGVELFSYPVAFEIWNV 808

Query: 184  YLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
            YL+KFV RY  +KLERAR+LF +A++K P    K L L Y +LEE++GL KRAM +Y+
Sbjct: 809  YLSKFVKRYGGAKLERARDLFEQALDKCPARFCKPLMLMYGQLEEEHGLVKRAMKIYE 866

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>SYF1_NEUCR (Q7SAK5) Pre-mRNA-splicing factor syf-1|
          Length = 829

 Score =  137 bits (345), Expect = 6e-33
 Identities = 66/119 (55%), Positives = 87/119 (73%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           SL+ TR VYERI +LRIATPQ ++NYA LLEE+KYFE++FK+YERG+ +F YP   ++W 
Sbjct: 511 SLDETRKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKIYERGLDLFSYPVAFELWN 570

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
            YLTK V R  +  +ER R+LF +AVE  PP   K +YL Y  LEE+ GLA+ AM +Y+
Sbjct: 571 LYLTKAVDR--KISIERLRDLFEQAVEDCPPKFAKVIYLMYGNLEEERGLARHAMRIYE 627



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 26/97 (26%), Positives = 44/97 (45%)
 Frame = +1

Query: 64  IILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVTRYQRSKLERAREL 243
           I L Y  L EE      A ++YER  +        D++  Y+TK  + +    L   R +
Sbjct: 605 IYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNF---GLPSTRPI 661

Query: 244 FTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
           +  A+   P  E + + L++A +E+  G   RA  +Y
Sbjct: 662 YERAIAALPDAEARDMCLKFADMEKRLGEIDRARAIY 698

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>SYF1_ASPFU (Q4WVF4) Pre-mRNA-splicing factor syf1|
          Length = 839

 Score =  136 bits (342), Expect = 1e-32
 Identities = 67/119 (56%), Positives = 87/119 (73%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           +LE TR VYERI +LRIATPQ ++NYA LLEE+KYFED+FKVYERG+ +F YP   ++W 
Sbjct: 508 TLEETRKVYERIFELRIATPQTVVNYANLLEEHKYFEDSFKVYERGLDLFSYPVAFELWN 567

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
            YLTK V R  +  +ER R+LF +A++  PP   K LYL Y  LEE+ GLA+ AM +Y+
Sbjct: 568 LYLTKAVDR--KIGIERLRDLFEQALDGCPPKFAKPLYLMYGNLEEERGLARHAMRIYE 624



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
 Frame = +1

Query: 4   LETTRAVYERILD---LRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDI 174
           +E  R ++E+ LD    + A P + L Y  L EE      A ++YER  +        ++
Sbjct: 580 IERLRDLFEQALDGCPPKFAKP-LYLMYGNLEEERGLARHAMRIYERATRAVSDEDRFEM 638

Query: 175 WVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
           +  Y+TK  + +    L   R ++  A+   P  E K + L++A +E   G   RA  +Y
Sbjct: 639 FEFYITKSASNF---GLTSTRPIYERAIAALPDQEAKEMCLKFADMERRLGEIDRARAIY 695

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>SYF1_MAGGR (Q52DF3) Pre-mRNA-splicing factor SYF1|
          Length = 816

 Score =  134 bits (337), Expect = 5e-32
 Identities = 64/119 (53%), Positives = 87/119 (73%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           +LE T+ VYERI +LRIATPQ ++NYA LLEE+KY+E++FK+YERG+ +F YP   ++W 
Sbjct: 498 TLEDTKKVYERIFELRIATPQTVVNYANLLEEHKYYEESFKIYERGLDLFSYPVAFELWN 557

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
            YLTK V R  +  +ER R+LF +AVE  PP   K +YL Y  LEE+ GLA+ AM +Y+
Sbjct: 558 MYLTKAVDR--KISIERLRDLFEQAVEGCPPKFAKIIYLMYGNLEEERGLARHAMRIYE 614



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 26/97 (26%), Positives = 45/97 (46%)
 Frame = +1

Query: 64  IILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVTRYQRSKLERAREL 243
           I L Y  L EE      A ++YER  +        D++  Y+TK  + +    L   R++
Sbjct: 592 IYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNF---GLPSTRQI 648

Query: 244 FTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
           +  A+   P  E + + L++A +E+  G   RA  +Y
Sbjct: 649 YERAIAALPDDEARDMCLKFADMEKRLGEIDRARAIY 685

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>SYF1_EMENI (Q5BH69) Pre-mRNA-splicing factor syf1|
          Length = 851

 Score =  132 bits (332), Expect = 2e-31
 Identities = 64/119 (53%), Positives = 87/119 (73%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           S+E T+ VYERI +LRIATPQ ++NYA LLEE+KYFE++FKVYERG+ +F YP   ++W 
Sbjct: 525 SIEETKKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKVYERGLDLFTYPVAFELWN 584

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
            YLTK V R  +  +ER R+LF +A++  PP   + LYL Y  LEE+ GLA+ AM +Y+
Sbjct: 585 LYLTKAVDR--KIGIERLRDLFEQALDGCPPKFARPLYLMYGNLEEERGLARHAMRIYE 641



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
 Frame = +1

Query: 4   LETTRAVYERILD---LRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDI 174
           +E  R ++E+ LD    + A P + L Y  L EE      A ++YER  +        ++
Sbjct: 597 IERLRDLFEQALDGCPPKFARP-LYLMYGNLEEERGLARHAMRIYERATRAVSDEDRFEM 655

Query: 175 WVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
           +  Y+TK  + +    L   R ++  A+   P HE K + L++A++E   G   RA  +Y
Sbjct: 656 FEFYITKSASNF---GLPSTRPIYERAIAALPDHEAKEMCLKFAEMERRLGEIDRARAIY 712

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>SYF1_YARLI (Q6CAR6) Pre-mRNA-splicing factor SYF1|
          Length = 736

 Score =  105 bits (261), Expect = 4e-23
 Identities = 57/118 (48%), Positives = 77/118 (65%)
 Frame = +1

Query: 1   SLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           + E T+ VYE+I+ L + TP  ++NYA LLEEN +FE+ FKVYE+G+ +F+     +IW 
Sbjct: 463 TFEETKQVYEKIMALDLLTPLFVVNYATLLEENDHFEEMFKVYEKGISLFE-ESAFEIWN 521

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
            YL K      R  LER R+LF +A+ K P   +KALY+ Y KLEED GL + AM VY
Sbjct: 522 LYLVK---ASPRLGLERLRDLFEDAISKFP--TQKALYILYGKLEEDRGLVRNAMRVY 574

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>SYF1_ASHGO (Q75EF0) Pre-mRNA-splicing factor SYF1|
          Length = 803

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 183
           LE T+A YE  + L+IATP + +NYA  L++     ++F +YER V IF      +IW  
Sbjct: 527 LERTKAAYEATIQLKIATPLLFVNYAHYLQDKGNHVESFSIYERAVDIFPAETAFEIWDI 586

Query: 184 YLTKFVTRYQRSKLERARELFTEAVEKAPPH-EKKALYLQYAKLEEDYGLAKRAMNV 351
           Y+ +   +Y   K E+ R+LF  +++ A    E K  +L YAK E D G+ + A N+
Sbjct: 587 YIGE-ALKYGLPK-EQIRDLFESSLKMANEGVECKPFFLLYAKFERDNGMIETAANI 641



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
 Frame = +1

Query: 7   ETTRAVYERILDLR---IATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVK-DI 174
           E  R ++E  L +    +      L YA    +N   E A  +  R  +  +    K  +
Sbjct: 599 EQIRDLFESSLKMANEGVECKPFFLLYAKFERDNGMIETAANILHRACRAAQTMDAKRSL 658

Query: 175 WVTYLTKFVTRYQRSKL--ERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRA 342
           W   L      + R +L    AR L+ E ++  P H      L+YAK+EE     KRA
Sbjct: 659 WTLCLN-----WCRQELGGSYARALYEECIQALPNHVAVVYVLEYAKVEEGLKQVKRA 711

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>SYF1_DEBHA (Q6BQ23) Pre-mRNA-splicing factor SYF1|
          Length = 850

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVK-DIWV 180
           +E     Y   +DL+IATP  I+N+A  LEE  ++E +F  YE G+KIFK   +K +IW 
Sbjct: 542 IEKVINAYNITIDLKIATPLTIINFANFLEEWNFYERSFSAYEMGLKIFKDSKIKFEIWN 601

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKA--------PPHEKKALYLQYAKLEEDYGLAK 336
            YL+K +       +ER R+LF + + ++        P +  K +YL Y++ E+  G   
Sbjct: 602 IYLSKIIK--HELNIERIRDLFEQCLNESSIEGYNGCPANLCKPVYLLYSQYEQSKGWFT 659

Query: 337 RAMNV 351
           +++ +
Sbjct: 660 KSVKI 664

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>SYF1_CANGA (Q6FUJ7) Pre-mRNA-splicing factor SYF1|
          Length = 835

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
 Frame = +1

Query: 25  YERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVT 204
           Y+ ++ L++ TP  ILNYA  L++N     + +VYE+G+ +F      ++W   L + + 
Sbjct: 564 YDTLMTLKLITPVGILNYATFLKQNNNLHGSLQVYEKGINMFPPEICYELWTLLLDEVME 623

Query: 205 RYQRSKLERARELFTEAVEKAPPHE--KKALYLQYAKLEEDYGLAKRAMNV 351
              ++  ER RELF + +++    +    ++Y++Y+  E    L  RA+++
Sbjct: 624 PAHQATKERIRELFEQCLQQLGNTDININSIYVKYSDFEIHNKLFSRAIDL 674



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/69 (28%), Positives = 39/69 (56%)
 Frame = +1

Query: 73  NYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVTRYQRSKLERARELFTE 252
           +YA +   NK +E+A  +YE   K+  +P ++D+ + + T  V  +Q   +ERA ++  +
Sbjct: 449 DYAKVYWSNKSYEEARTIYESATKV-PFPDLQDLEIVWHTWAVNEFQIHNIERALKILRK 507

Query: 253 AVEKAPPHE 279
           A+   P +E
Sbjct: 508 ALTVPPSYE 516

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>SYF1_YEAST (Q04048) Pre-mRNA-splicing factor SYF1 (Synthetic lethal with CDC40|
           protein 1) (PRP19-associated complex protein 90)
          Length = 859

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
 Frame = +1

Query: 13  TRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLT 192
           T+  Y  ++DLR+ TP +  N+A  L+ +    ++F+VYE+ + +F      ++W+ YL 
Sbjct: 570 TKMAYNTVIDLRLITPAMAENFALFLQNHYEVMESFQVYEKTIPLFPPEIQYELWIEYL- 628

Query: 193 KFVTRYQRSKL--ERARELFTEAVEKAPPH--EKKALYLQYAKLEEDY-GLAKRAMNV 351
           +  T +Q S L  E  R LF +A++    +  + K +++ Y+  EE   GL  +++ +
Sbjct: 629 EVATSHQLSSLSPEHIRFLFEKALKNLCSNGIDCKTIFIAYSVFEERISGLISKSIEI 686

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>CRNL1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck homolog)|
           (Crooked neck protein)
          Length = 690

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 32/108 (29%), Positives = 52/108 (48%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 183
           +E  R +YER + +  A    I  YA   E++ YF  A KVYER V+ F   H+ +    
Sbjct: 198 VERARTIYERFVLVHPAVKNWI-KYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 256

Query: 184 YLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYG 327
              KF     + + ER R ++  A+++    E + L+  Y   E+ +G
Sbjct: 257 AFAKF--EENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 302



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKY--FEDAFKVYERGVKIFKYPHVKDIWVTYL 189
           R V+ER ++ +   P+    ++++  E +Y   E A  +YER V +  +P VK+ W+ Y 
Sbjct: 169 RQVFERWMEWQ---PEEQAWHSYINFELRYKEVERARTIYERFVLV--HPAVKN-WIKY- 221

Query: 190 TKFVTRYQRSKLERARELFTEAVEK-APPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
            +F  ++  +    AR+++  AVE     H  + LY+ +AK EE+    +R   +Y
Sbjct: 222 ARFEEKH--AYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIY 275

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>CRNL1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck homolog)|
          Length = 690

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 32/108 (29%), Positives = 52/108 (48%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 183
           +E  R +YER + +  A    I  YA   E++ YF  A KVYER V+ F   H+ +    
Sbjct: 198 VERARTIYERFVLVHPAVKNWI-KYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 256

Query: 184 YLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYG 327
              KF     + + ER R ++  A+++    E + L+  Y   E+ +G
Sbjct: 257 AFAKF--EENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 302



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKY--FEDAFKVYERGVKIFKYPHVKDIWVTYL 189
           R V+ER ++ +   P+    ++++  E +Y   E A  +YER V +  +P VK+ W+ Y 
Sbjct: 169 RQVFERWMEWQ---PEEQAWHSYINFELRYKEVERARTIYERFVLV--HPAVKN-WIKY- 221

Query: 190 TKFVTRYQRSKLERARELFTEAVEK-APPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
            +F  ++  +    AR+++  AVE     H  + LY+ +AK EE+    +R   +Y
Sbjct: 222 ARFEEKH--AYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIY 275

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>SYF1_KLULA (Q6CYA2) Pre-mRNA-splicing factor SYF1|
          Length = 798

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
 Frame = +1

Query: 25  YERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVT 204
           YE  + ++ ATP + +NYA L E + +  +A  V+ER V+IF     K IW  YL   V 
Sbjct: 525 YETAILIKAATPAMFINYALLNESSGHQAEALAVFERSVEIFPPSVSKSIWDIYLD--VA 582

Query: 205 RYQRSKLERARELFTEAVEKAPPHEK-KALYLQYAKLEEDYGLAKRAMNV 351
                  E+ R++F  A++ A       + + +Y+  E + G  +R++ +
Sbjct: 583 LKADITKEQKRDIFESAIKLAASGVACVSFFEKYSDFELNLGFHERSVEI 632

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>CRNL1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck homolog) (hCrn)|
          Length = 848

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQII--LNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIW 177
           ++  R +YER +   +  P +   + YA   E++ YF  A KVYER V+ F   H+ +  
Sbjct: 359 VDRARTIYERFV---LVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHL 415

Query: 178 VTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYG 327
                KF     + + ER R ++  A+++    + + L+  Y   E+ +G
Sbjct: 416 YVAFAKF--EENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFG 463



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKYFE--DAFKVYERGVKIFKYPHVKDIWVTYL 189
           R V+ER ++ +   P+    ++++  E +Y E   A  +YER V +  +P VK+ W+ Y 
Sbjct: 330 RQVFERWMEWQ---PEEQAWHSYINFELRYKEVDRARTIYERFVLV--HPDVKN-WIKY- 382

Query: 190 TKFVTRYQRSKLERARELFTEAVEK-APPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
            +F  ++  +    AR+++  AVE     H  + LY+ +AK EE+    +R   +Y
Sbjct: 383 ARFEEKH--AYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIY 436

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>CRN_DROME (P17886) Protein crooked neck|
          Length = 702

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 183
           ++  R+++ER LD       + L YA +  +NK    A  +++R V I   P V   W  
Sbjct: 92  IQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIM--PRVNQFWYK 149

Query: 184 YLTKFVTRYQRSKLER---ARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
           Y       Y    LE    AR++F   +E  P   ++  +  Y   E  Y    RA  +Y
Sbjct: 150 Y------TYMEEMLENVAGARQVFERWMEWQP---EEQAWQTYVNFELRYKEIDRAREIY 200

Query: 355 D 357
           +
Sbjct: 201 E 201



 Score = 36.2 bits (82), Expect = 0.020
 Identities = 24/108 (22%), Positives = 51/108 (47%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 183
           ++  R +YER + +       I  +A   E + +   + +V+ER V+ F   ++++    
Sbjct: 193 IDRAREIYERFVYVHPDVKNWI-KFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFI 251

Query: 184 YLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYG 327
              +F     + + +RAR ++  A++  P    + L+  Y K E+ YG
Sbjct: 252 AFARF--EEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYG 297

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>NPHP3_XENLA (Q6AZT7) Nephrocystin-3|
          Length = 1300

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
 Frame = +1

Query: 1    SLETTRAVYERILDLRIAT--------PQIILNYAFLLEENKYFEDAFKVYERGVKIFKY 156
            +LET     +R L++R            Q I N A L  E K ++ A ++YER + I + 
Sbjct: 1081 NLETAETFLKRSLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRR 1140

Query: 157  ---PHVKDIWVTYLTKFVTRYQRSKLERARELFTEAVEK-----APPHEKKA-------- 288
               P    +  T     V   ++ KL++A  L+  AV+       P H   A        
Sbjct: 1141 ALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAV 1200

Query: 289  LYLQYAKLEEDYGLAKRAMNVYD 357
            LY Q  K ++   L +RAM +Y+
Sbjct: 1201 LYCQMKKQDDALPLYERAMKIYE 1223



 Score = 35.8 bits (81), Expect = 0.027
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
 Frame = +1

Query: 4    LETTRAVYERILDLRIAT-----PQI---ILNYAFLLEENKYFEDAFKVYERGVKIFK-- 153
            L+    +YE  +D+R  +     P +   ++N A L  + K  +DA  +YER +KI++  
Sbjct: 1166 LDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDALPLYERAMKIYEDS 1225

Query: 154  ----YPHVKDIWVTYLTKFVTRYQRSKLERARELFTEAVE 261
                +P V +   T     V RY+    E+A EL+  A+E
Sbjct: 1226 LGRMHPRVGE---TLKNLAVLRYEEGDYEKAAELYKRAME 1262

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>CLF1_YARLI (Q6C186) Pre-mRNA-splicing factor CLF1|
          Length = 676

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 196 FVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNV 351
           F TR++  + ERAR L+T  +EK P  +   LY  Y   E+ YG  +   NV
Sbjct: 252 FETRHR--EYERARALYTYGLEKLPKSKSAKLYADYTAFEKQYGAKEGIENV 301



 Score = 33.5 bits (75), Expect = 0.13
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +1

Query: 169 DIWVTYLTKFVTRYQRSKLE--RARELFTEAVEKAPPHEKKA------LYLQYAKLEE 318
           D W +Y    +T  Q S LE  + RE+F  AV   PPH K+       L+++YA  EE
Sbjct: 322 DTWFSY----ITLGQESGLEADQIREIFERAVSNVPPHSKRLWRRYIFLWIKYAIWEE 375

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>CLF1_NEUCR (Q7SGD2) Pre-mRNA-splicing factor clf-1|
          Length = 695

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 30/143 (20%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYL-- 189
           R+V+ER LD+     Q+ + Y     +N+    A  + +R V   + P V  +W  YL  
Sbjct: 92  RSVFERALDVHPNNTQLWIRYVQAEIKNRNINHARNLLDRAVT--RLPRVTSLWYQYLYV 149

Query: 190 ---------------------------TKFVTRYQR-SKLERARELFTEAVEKAPPHEKK 285
                                      + ++   +R  + +RARE+F         H + 
Sbjct: 150 MEMLGDIPGTRQVFDRWMKWQPDEQAWSAYIRLEKRYGEFDRAREIFRAFTAV---HPEP 206

Query: 286 ALYLQYAKLEEDYGLAKRAMNVY 354
             +L++AK EE+YG +     V+
Sbjct: 207 RTWLKWAKFEEEYGTSDTVREVF 229

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>CLF1_CRYNV (Q9HF03) Pre-mRNA-splicing factor CLF1 (crooked-neck-like protein|
           1)
          Length = 724

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 27/117 (23%), Positives = 53/117 (45%)
 Frame = +1

Query: 7   ETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTY 186
           E +R+V+ER LD+   +  + + Y  +  + +    A  +++R + +   P V  +W  Y
Sbjct: 92  ERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLL--PRVDALWYKY 149

Query: 187 LTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           +           +  AR++F   ++  P  +    +  Y KLEE Y    RA  +Y+
Sbjct: 150 V---YLEELLLNVSGARQIFERWMQWEPNDKA---WQSYIKLEERYNELDRASAIYE 200



 Score = 35.4 bits (80), Expect = 0.035
 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIF-----KYPHVK 168
           L+   A+YER +  R   P+  + +A   E+    + A +V++  ++ F     +    +
Sbjct: 192 LDRASAIYERWIACR-PIPKNWVAWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQ 250

Query: 169 DIWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYG 327
            ++  +  +  TR +  + ERAR ++  A+ + P  +  +LY QY K E+ +G
Sbjct: 251 SVFAAF-ARMETRLK--EFERARVIYKFALARLPRSKSASLYAQYTKFEKQHG 300



 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +1

Query: 229 RARELFTEAVEKAPPHEKKA-------LYLQYAKLEE-DYGLAKRAMNVY 354
           R RE++  AV   PP  +K        L+LQYA  EE D     RA +VY
Sbjct: 356 RVREVYERAVANVPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARDVY 405

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>CLF1_KLULA (Q6CJK2) Pre-mRNA-splicing factor CLF1|
          Length = 684

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
 Frame = +1

Query: 4   LETTRAVYERILDL----RIATPQIILNYA-FLLEENKYFEDAFKVYERGVKIFKYPHVK 168
           L T R+VY+ ILD+    +    ++ + YA F + +N   + A K+   GV + K P  K
Sbjct: 376 LPTIRSVYQDILDIIPHKKFTFGKLWIMYAEFEIRQNNLLK-ARKIL--GVSLGKSPKPK 432

Query: 169 DIWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMN 348
            ++  Y+   +   +  + +R R+L+ + ++  P   +   +L YA+LEE+ G   R+  
Sbjct: 433 -VFKYYINLEI---RLKEFDRVRKLYEKYIDFNPSSVQS--WLDYAELEENLGDEDRSRG 486

Query: 349 VYD 357
           +YD
Sbjct: 487 IYD 489

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>CLF1_CRYNE (Q5KNE9) Pre-mRNA-splicing factor CLF1|
          Length = 726

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIF-----KYPHVK 168
           L+   A+YER +  R   P+  + +A   E+    + A +V++  ++ F     +    +
Sbjct: 192 LDRASAIYERWIACR-PIPKNWVTWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQ 250

Query: 169 DIWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYG 327
            ++  +  +  TR +  + ERAR ++  A+ + P  +  +LY QY K E+ +G
Sbjct: 251 SVFAAF-ARMETRLK--EFERARVIYKFALARLPRSKSASLYAQYTKFEKQHG 300



 Score = 36.2 bits (82), Expect = 0.020
 Identities = 27/117 (23%), Positives = 53/117 (45%)
 Frame = +1

Query: 7   ETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTY 186
           E +R+V+ER LD+   +  + + Y  +  + +    A  +++R + +   P V  +W  Y
Sbjct: 92  ERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLL--PRVDALWYKY 149

Query: 187 LTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           +           +  AR++F   ++  P  +    +  Y KLEE Y    RA  +Y+
Sbjct: 150 V---YLEELLLNVSGARQIFERWMQWEPNDKA---WQSYIKLEERYNELDRASAIYE 200



 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +1

Query: 229 RARELFTEAVEKAPPHEKKA-------LYLQYAKLEE-DYGLAKRAMNVY 354
           R RE++  AV   PP  +K        L+LQYA  EE D     RA +VY
Sbjct: 356 RVREVYERAVANVPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARDVY 405

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>CLF1_MAGGR (Q527H0) Pre-mRNA-splicing factor CLF1|
          Length = 691

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 30/145 (20%)
 Frame = +1

Query: 13  TRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYL- 189
           +R+V+ER L+L      + + Y     +++    A  + +R V     P V  +W  Y+ 
Sbjct: 91  SRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVT--HLPRVDKLWYKYVW 148

Query: 190 ----------------------------TKFVTRYQR-SKLERARELFTEAVEKAPPHEK 282
                                       + F+   QR  + +RARE+FT        H +
Sbjct: 149 VEEMLGNIPGVRQVFERWMEWQPDEAAWSAFIKLEQRYGEYDRAREIFTRFTMV---HPE 205

Query: 283 KALYLQYAKLEEDYGLAKRAMNVYD 357
              +++++K EE+YG + R   V++
Sbjct: 206 PRNWIKWSKFEEEYGTSDRVREVFE 230

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>NPHP3_MOUSE (Q7TNH6) Nephrocystin-3|
          Length = 1324

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +1

Query: 67   ILNYAFLLEENKYFEDAFKVYERGVKIFK------YPHVKDIWVTYLTKFVTRYQRSKLE 228
            ++N A L  + K   +A  +YER +KI++      +P V +   T     V  Y+    E
Sbjct: 1216 LVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGE---TLKNLAVLSYEEGNFE 1272

Query: 229  RARELFTEAVE 261
            +A EL+  A+E
Sbjct: 1273 KAAELYKRAME 1283

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>PRPU_HUMAN (O94906) U5 snRNP-associated 102 kDa protein (U5-102 kDa protein)|
          Length = 941

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +1

Query: 160 HVKDIWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKR 339
           H +D    ++ K     Q+  +E+ARE + + ++K P      L+L  ++LEE  G   R
Sbjct: 704 HYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCP--HSTPLWLLLSRLEEKIGQLTR 761

Query: 340 AMNVYD 357
           A  + +
Sbjct: 762 ARAILE 767

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>CLF1_USTMA (Q4PB37) Pre-mRNA-splicing factor CLF1|
          Length = 781

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKI--------FKYP 159
           ++  R++YER LD+      + L Y     + +  + A  +Y+R V I        +KY 
Sbjct: 86  MDRCRSIYERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAVSILPRIDQLWYKYV 145

Query: 160 HVKDI-----------------------WVTYLTKFVTRYQRSKLERARELFTEAVEKAP 270
           H++++                       W  Y+   V RY   +L+RA  ++   V   P
Sbjct: 146 HLEELLGNIPGTRQVFERWMKWEPEEKAWHAYINLEV-RY--DELDRASAIWERCVTCHP 202

Query: 271 PHEKKALYLQYAKLEEDYGLAKRAMNVY 354
             ++   ++++AK EED G  ++A  V+
Sbjct: 203 VPKQ---WIRWAKFEEDRGNLEKARIVF 227

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>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor|
          Length = 1385

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = +1

Query: 7    ETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYP-----HVKD 171
            +  R ++ER LD      +II  YA    E   + +A ++Y+R ++I         H + 
Sbjct: 1036 DKARLLFERALDAHPLNTKIINMYARFEAEEGSYREAAELYDRALQIDPLSPGPGVHNRA 1095

Query: 172  IWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAM 345
             W +  T             AR+L  E +E  P     AL + Y+KL+   G  + A+
Sbjct: 1096 DWASMETDL------GNTGLARQLLEEGLEAHP--NSAALLVVYSKLQRLEGRYQEAL 1145

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>CLF1_EMENI (Q5BDX1) Pre-mRNA-splicing factor clf1|
          Length = 602

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 183
           L   R  YE  L   +    +  ++A L E++   E    VYER +        K  W  
Sbjct: 232 LAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRR 291

Query: 184 YLTKFV-----TRYQRSKLERARELFTEAVEKAPPHEK 282
           Y+  ++        +   ++RAR+++TE + K  PH+K
Sbjct: 292 YIYLWIFYALWEEMEAKDIDRARQVYTECL-KLIPHKK 328



 Score = 31.2 bits (69), Expect = 0.65
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 32/145 (22%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYL-- 189
           R+++ER LD+   +  + + Y      N+    A  + +R V I   P V  +W  Y+  
Sbjct: 21  RSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTIL--PRVDKLWYKYVYM 78

Query: 190 ------------------------------TKFVTRYQRSKLERARELFTEAVEKAPPHE 279
                                          K   RY  ++ ERAR +F         H 
Sbjct: 79  EETLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRY--NEFERARAIFQRFTIV---HP 133

Query: 280 KKALYLQYAKLEEDYGLAKRAMNVY 354
           +   ++++A+ EE+YG +     VY
Sbjct: 134 EPRNWIKWARFEEEYGTSDLVREVY 158



 Score = 28.1 bits (61), Expect = 5.5
 Identities = 24/100 (24%), Positives = 44/100 (44%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTK 195
           R +YE+ ++   +  Q  + YA L       E A  +YE G+        + +W  Y+  
Sbjct: 385 RTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLDMPELVWKAYID- 443

Query: 196 FVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLE 315
                   + ER R+L+   ++K   H K  +++ YA+ E
Sbjct: 444 --FEDDEGEYERERQLYERLLQKT-DHVK--VWINYARFE 478



 Score = 27.3 bits (59), Expect = 9.4
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
 Frame = +1

Query: 106 FEDAFKVYERGVKIFKY-----PHVKDI-----WVTYLTKFVTRYQRSKLERARELFTEA 255
           FE   K YER   I+KY     P  K I     + T+  +F  R     +  A+      
Sbjct: 181 FETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYE 240

Query: 256 VEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
            +         ++  +A+LEE  G  +R  +VY+
Sbjct: 241 EQLKENLRNYDVWFDFARLEEQSGDPERVRDVYE 274

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>TRPA_IDILO (Q5QX79) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 269

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = +1

Query: 10  TTRAVYERILDLRIATPQI---ILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 180
           T + + E + ++R  +PQI   +L YA L            +Y +GV+ F Y  +KD  V
Sbjct: 77  TFKHILEILKEIRDYSPQIPIGLLVYANL------------IYAKGVRNF-YQQMKDAGV 123

Query: 181 --TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAK 309
               +    T+  +   + A+E+  EAV  APP    AL +  AK
Sbjct: 124 DSVLIADVPTKEAKRFADIAKEIGIEAVFIAPPDASDALLIDIAK 168

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>NPHP3_HUMAN (Q7Z494) Nephrocystin-3|
          Length = 1330

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +1

Query: 67   ILNYAFLLEENKYFEDAFKVYERGVKIFK------YPHVKDIWVTYLTKFVTRYQRSKLE 228
            ++N A L  + K   +A  +YER +KI++      +P V +   T     V  Y+    E
Sbjct: 1222 LVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGE---TLKNLAVLSYEGGDFE 1278

Query: 229  RARELFTEAVE 261
            +A EL+  A+E
Sbjct: 1279 KAAELYKRAME 1289

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>CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1|
          Length = 676

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKI--------FKYPHVKD 171
           R+++ER LD+   +  + + Y      N+    A  + +R V I        +KY ++++
Sbjct: 92  RSIFERALDVNPTSVVLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKFWYKYVYMEE 151

Query: 172 I-----------------------WVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEK 282
                                   W  Y+ K   RY  ++ ERAR +F         H +
Sbjct: 152 TLGNIQGTRQVFERWMSWEPDEGAWSAYI-KLEKRY--NEFERARAIFQRFTIV---HPE 205

Query: 283 KALYLQYAKLEEDYGLAKRAMNVY 354
              ++++A+ EE+YG +     VY
Sbjct: 206 PRNWIKWARFEEEYGTSDLVREVY 229

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>RNA14_YEAST (P25298) mRNA 3'-end processing protein RNA14|
          Length = 677

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
 Frame = +1

Query: 4   LETTRAVYERILDL-RIATPQIILNYAFLLEENKY-FEDAFKVYERGVKIFKYPHVKDIW 177
           L   R V+ +   L RI T  + +  A+L  +N+  ++ AFKV E G+K F+   V    
Sbjct: 429 LSAARTVFGKCRKLKRILTHDVYVENAYLEFQNQNDYKTAFKVLELGLKYFQNDGV---- 484

Query: 178 VTYLTKFVT-RYQRSKLERARELFTEAVEKAPP-HEKKALYLQYAKLEEDYG 327
             Y+ K++      +K  + + LF  +VEK     + K +Y +    E  +G
Sbjct: 485 --YINKYLDFLIFLNKDSQIKTLFETSVEKVQDLTQLKEIYKKMISYESKFG 534

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>PRPU_MOUSE (Q91YR7) U5 snRNP-associated 102 kDa protein (U5-102 kDa protein)|
          Length = 941

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 160 HVKDIWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKR 339
           H +D    ++ K     Q   +E+ARE + + ++K P      L+L  ++LEE  G   R
Sbjct: 704 HYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCP--HSTPLWLLLSRLEEKIGQLTR 761

Query: 340 AMNVYD 357
           A  + +
Sbjct: 762 ARAILE 767

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>SUF_DROME (P25991) Protein suppressor of forked|
          Length = 733

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
 Frame = +1

Query: 4   LETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERG-VKIFKYPHVKDIWV 180
           +   R++YE ++++   T +    Y  +   ++Y+E   K+++R  VKI       D+W 
Sbjct: 48  IHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNI----DLWK 103

Query: 181 TYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDY 324
            YLT    +  +S L   +E   +A + A   EK  + L    + +DY
Sbjct: 104 LYLT--YVKETKSGLSTHKEKMAQAYDFA--LEKIGMDLHSFSIWQDY 147

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>HTPG_YERPS (Q66DP8) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 624

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +1

Query: 94  ENKYFEDAFKVYERGVKIFKYPHVKDIWVTY----LTKFVTRYQRSKLERARELFTEAVE 261
           E +  E A + +   VK      VKD+ +T+        VT        +  +LF  A +
Sbjct: 500 EQQEAEKALEPFVERVKTLLGERVKDVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQ 559

Query: 262 KAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           +AP  E K ++    +L  D+GL KRA  V D
Sbjct: 560 QAP--EVKYIF----ELNPDHGLVKRAAEVTD 585

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>HTPG_YERPE (P58482) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 622

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +1

Query: 94  ENKYFEDAFKVYERGVKIFKYPHVKDIWVTY----LTKFVTRYQRSKLERARELFTEAVE 261
           E +  E A + +   VK      VKD+ +T+        VT        +  +LF  A +
Sbjct: 498 EQQEAEKALEPFVERVKTLLGERVKDVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQ 557

Query: 262 KAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           +AP  E K ++    +L  D+GL KRA  V D
Sbjct: 558 QAP--EVKYIF----ELNPDHGLVKRAAEVTD 583

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>PEX5_PICAN (Q01495) Peroxisomal targeting signal receptor (Peroxisomal protein|
           PAH2) (Peroxin-5) (PTS1 receptor)
          Length = 569

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +1

Query: 61  QIILNYA-FLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVTRYQRSKLERAR 237
           Q  LNY  +  EEN  F +    YE G+K+ +                     +KL  A 
Sbjct: 252 QTRLNYGEYTFEENNQFRNNLDAYEIGIKLME-------------------SGAKLSEAA 292

Query: 238 ELFTEAVEKAPPHEKKALYLQYAKLEEDYGLA 333
             F  AVE+ P H    L L   + + +  LA
Sbjct: 293 LAFEAAVEQNPGHVDAWLRLGQVQTQNEKELA 324

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>MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplast precursor|
          Length = 662

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 24/96 (25%), Positives = 46/96 (47%)
 Frame = +1

Query: 19  AVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKF 198
           A+  R  +L    P +   +A + ++    E A +++E+G++    P    +W  Y    
Sbjct: 360 ALLRRGCELNPTDPALYQAWALVEKQAGRIERARELFEQGLRAD--PSDLYMWQAY---G 414

Query: 199 VTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYA 306
           V   ++  ++RAR+LF E V  A P     +Y+ +A
Sbjct: 415 VMEAEQGNMDRARQLFQEGV-WADPRSPSTVYVFHA 449

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>CP2R1_HUMAN (Q6VVX0) Cytochrome P450 2R1 (EC 1.14.14.-) (Vitamin D|
           25-hydroxylase)
          Length = 501

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 85  LLEENKYFEDAFKVYERGVKIFKYPHVKDIW-VTYLTKFVTR--YQRSKLERARELFTEA 255
           +LEE K+F DA + Y+     FK      +  +T L  F  R  Y+ +  +   ELF+E 
Sbjct: 158 ILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGERFTYEDTDFQHMIELFSEN 217

Query: 256 VEKA 267
           VE A
Sbjct: 218 VELA 221

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>CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1|
          Length = 677

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
 Frame = +1

Query: 106 FEDAFKVYERGVKIFKY-----PHVKDI-----WVTYLTKFVTR--YQRSKLERARELFT 249
           +E   K +ER   I+KY     P  K +     + T+  +F  R   +   L + R  + 
Sbjct: 252 YEAKLKEFERARAIYKYALDRLPRAKSVALHKAYTTFEKQFGDREGVEDVILSKRRVQYE 311

Query: 250 EAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           E +++ P +    ++  + +LEE  G  +R  +VY+
Sbjct: 312 EQIKENPKNYD--IWFDFVRLEESSGDVERVRDVYE 345



 Score = 28.1 bits (61), Expect = 5.5
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
 Frame = +1

Query: 16  RAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIF--------KYPHVKD 171
           R+V+ER LD+      + + Y     + +    A  + +R V I+        KY ++++
Sbjct: 92  RSVFERALDVDPTAVVLWIRYIEAEMKTRNINHARNLLDRAVTIYSRVDKLWYKYVYMEE 151

Query: 172 I-----------------------WVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEK 282
           +                       W  Y+ K   RY  ++ +R R +F E      P  K
Sbjct: 152 MLGNIPGTRQVFERWMSWEPDEGAWGAYI-KLEKRY--NEFDRVRAIF-ERFTVVHPEPK 207

Query: 283 KALYLQYAKLEEDYGLAKRAMNVY 354
              ++++A+ EE+YG +     VY
Sbjct: 208 N--WIKWARFEEEYGTSDMVREVY 229

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>Y1625_METJA (Q59020) Hypothetical protein MJ1625|
          Length = 671

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
 Frame = +1

Query: 7   ETTRAVYERILDLRIATPQIILNYAFLLEENKYFE------DAFKVYERGVKIFKYPHVK 168
           E ++ +++ I + R   PQI+L      ++N+YF+        +K  E+         V 
Sbjct: 231 EASKNLFDEIFNNR--KPQIVL------KDNEYFDVVPIDLKKYKGLEKKYYNSFLEAVD 282

Query: 169 DIWVTYLTKFVTRYQRSKLERARE 240
           D +  +LTK V + ++SK+E+  E
Sbjct: 283 DYFAKFLTKVVVKKEKSKIEKEIE 306

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>BXEN_CLOBU (Q06366) Botulinum neurotoxin type E, nontoxic component|
          Length = 1162

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 73  NYAFLLEENKYFEDAFKVY-ERGVKIFKYPHVKDIWVTYLTKFVTRYQRSKLER 231
           +Y   ++ N Y  ++ K+Y E+  KI    +VKDIW   L+ F   +Q    ER
Sbjct: 267 DYEIKIKNNNYIANSIKLYLEQKFKI----NVKDIWELNLSYFSKEFQIMMPER 316

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>BXEN_CLOBO (P46082) Botulinum neurotoxin type E, nontoxic component|
          Length = 1162

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 73  NYAFLLEENKYFEDAFKVY-ERGVKIFKYPHVKDIWVTYLTKFVTRYQRSKLER 231
           +Y   ++ N Y  ++ K+Y E+  KI    +VKDIW   L+ F   +Q    ER
Sbjct: 267 DYEIKIKNNNYIANSIKLYLEQKFKI----NVKDIWELNLSYFSKEFQIMMPER 316

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>GAL1_KLULA (P09608) Galactokinase (EC 2.7.1.6) (Galactose kinase)|
          Length = 503

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 184 YLTKFVTRYQRSKL-ERARELFTEAV 258
           YLT F  R+QR KL +RA+ +++EA+
Sbjct: 360 YLTNFPVRFQRLKLFQRAKHVYSEAL 385

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>PGMP_PEA (Q9SM59) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)|
           (Glucose phosphomutase) (PGM)
          Length = 626

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +1

Query: 163 VKDIWVTYLTKFVTRYQRSKLE-----RARELFTEAVEKAPPHEKKALY-LQYA 306
           VK+ W TY   F +RY   + E     +  E   E + K+ P +K   Y LQ+A
Sbjct: 482 VKEHWATYGRNFFSRYDYEECESEGANKMIEYLRELLSKSKPGDKYGSYVLQFA 535

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>RPC1_PLAFA (P27625) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)|
          Length = 2339

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
 Frame = +1

Query: 70   LNYAFLLEENKYFEDAFKVYERGVKIFKY-----------PHVKDIWVTYLTKFVTRYQR 216
            +N   LL +NKY+   FK     V +F+Y           P+    W ++L +++T    
Sbjct: 1615 INENDLLYDNKYYRQIFKNVIGFVSVFEYVESYKQHYILFPYEIIKWTSFLLEYLTEIIP 1674

Query: 217  SKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVY 354
            + +    +L   + ++ P H+K    ++    E    L  +A+N+Y
Sbjct: 1675 TNIFLHTKL---SKKEKPTHQKNTGKMKIYIEEIKKWLFIKAINIY 1717

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>APBB3_MOUSE (Q8R1C9) Amyloid beta A4 precursor protein-binding family B member|
           3
          Length = 486

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 260 STASVNSSLARSNLLRWYLVTNFVR 186
           S +S++SSL RSN L WY   ++VR
Sbjct: 86  SFSSLDSSLNRSNSLTWYSEDSYVR 110

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>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 136 GVKIF-KYPHVKDIWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKL 312
           G++ F K PH    WV ++T +   +Q +K         E ++    +EKK  Y + AKL
Sbjct: 345 GIQTFPKGPHATGPWVYFITVYCRTFQTAK---------EVIKAQKKYEKK--YPRSAKL 393

Query: 313 EEDYGLAKRAMNV 351
           +   G   +++ +
Sbjct: 394 KASLGKFSKSLPI 406

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>GCY_ARBPU (P11528) Resact receptor precursor (Guanylate cyclase) (EC 4.6.1.2)|
          Length = 986

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 19  AVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKD 171
           A+   ++DL I   Q   +  + LE + Y E   + YE+  K+ +Y    D
Sbjct: 270 AIVGAVIDLEIRDSQDYHSLEYTLEASDYLEQINQAYEQMFKLREYTRTDD 320

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>APBB3_RAT (O35827) Amyloid beta A4 precursor protein-binding family B member|
           3 (Fe65-like protein 2) (Fe65L2)
          Length = 504

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 260 STASVNSSLARSNLLRWYLVTNFVR 186
           S +S++SSL RSN L WY   ++VR
Sbjct: 84  SFSSLDSSLNRSNSLTWYNEDSYVR 108

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>TRMU_UREPA (Q9PQ88) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 385

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 106 FEDAFKVYER-GVKIFKYPHVKDIWVTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEK 282
           ++DA  V ++ G+ +++   +K+ W      F++ YQ+++      L  + +       K
Sbjct: 66  YQDAQAVAQKIGIPLYRVEFIKEYWDNVFEYFLSEYQKNRTPNPDILCNQFI-------K 118

Query: 283 KALYLQYAK--LEEDY 324
              +L YAK  L+ DY
Sbjct: 119 FDSFLNYAKNELQADY 134

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>CLF1_ASHGO (Q750X3) Pre-mRNA-splicing factor CLF1|
          Length = 683

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 220 KLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD 357
           + +R R L  + +E  P  +  + +++YA+LEE+ G   RA  +Y+
Sbjct: 443 EFDRVRRLHEKLLEFQP--DVLSNWIEYAELEENLGDEDRARGIYE 486

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>RNH2_PYRFU (Q8U036) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 224

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 223 LERARELFTEAVEKAPPHEKKALYLQYAKLEEDY 324
           +E+ R +  +  ++  PHE+K L+ Q   + +DY
Sbjct: 30  IEKLRNIGVKDSKQLTPHERKNLFSQITSIADDY 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,256,732
Number of Sequences: 219361
Number of extensions: 817467
Number of successful extensions: 2420
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 2318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2407
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result