Clone Information

BLAST Search Result

Clone Name	baet102g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_479318.1\| Oryza sativa (japonica cultivar-group), mRNA	329	4e-87
2	ref\|XM_506511.1\| PREDICTED Oryza sativa (japonica cultivar-group...	329	4e-87
3	dbj\|AK101483.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	329	4e-87
4	dbj\|AK066726.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	329	4e-87
5	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	8e-45
6	dbj\|AP003765.5\| Oryza sativa (japonica cultivar-group) genomic D...	188	8e-45
7	dbj\|AP003832.3\| Oryza sativa (japonica cultivar-group) genomic D...	188	8e-45
8	ref\|NM_122757.2\| Arabidopsis thaliana unknown protein AT5G28740 ...	131	2e-27
9	gb\|AF262041.1\|T32B20 Arabidopsis thaliana BAC T32B20	131	2e-27
10	emb\|AL442644.7\| Human DNA sequence from clone RP11-342F21 on chr...	44	0.30
11	gb\|CP000153.1\| Thiomicrospira denitrificans ATCC 33889, complete...	40	4.7
12	gb\|AE014850.1\| Plasmodium falciparum 3D7 chromosome 12, section ...	40	4.7
13	emb\|AL135790.7\| Human DNA sequence from clone RP11-87N24 on chro...	40	4.7
14	emb\|AL035454.18\|HS1002M8 Human DNA sequence from clone RP5-1002M...	40	4.7
15	gb\|AC051649.21\| Homo sapiens chromosome 11, clone RP11-534I22, c...	40	4.7
16	emb\|Z99124.2\|BSUB0021 Bacillus subtilis complete genome (section...	40	4.7
17	gb\|AE015928.1\| Bacteroides thetaiotaomicron VPI-5482, complete g...	40	4.7
18	emb\|CR338923.2\| Gallus gallus finished cDNA, clone ChEST979j24	40	4.7
19	ref\|XM_345418.2\| PREDICTED: Rattus norvegicus aquarius (predicte...	40	4.7
20	gb\|AY555143.1\| Zea may BAC clone c573L14, complete sequence	40	4.7
21	emb\|CR376843.11\| Zebrafish DNA sequence from clone CH211-284N15 ...	40	4.7
22	gb\|AF074834.1\|AF074834 Campylobacter jejuni strain JEO2759 (16-1...	40	4.7
23	gb\|AF074832.1\|AF074832 Campylobacter jejuni strain JEO2677 (3-1 ...	40	4.7
24	gb\|AF074830.1\|AF074830 Campylobacter jejuni strain KJ7 tRNA-Ala ...	40	4.7
25	gb\|AF074829.1\|AF074829 Campylobacter jejuni strain NCTC11392 tRN...	40	4.7
26	dbj\|D26185.1\|BAC180K B. subtilis DNA, 180 kilobase region of rep...	40	4.7

>ref|XM_479318.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2990

 Score =  329 bits (166), Expect = 4e-87
 Identities = 304/350 (86%)
 Strand = Plus / Plus

                                                                        
Query: 4    ttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaactcctcaa 63
            |||||| |||| || || ||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct: 1672 ttggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccccaa 1731

                                                                        
Query: 64   ataattcttaattatgcgttccttcttgaggagaacaagtatttcgaagatgcatttaaa 123
            ||| |||| |||||||| |  ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1732 atagttctcaattatgcatatcttcttgaggaaaacaagtatttcgaagatgcgtttaaa 1791

                                                                        
Query: 124  gtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggatatttgggtgacc 183
            ||||||||  | ||||| ||||| || || |||||||||||||| || ||||||||||||
Sbjct: 1792 gtgtatgagcgtggtgtgaaaatttttaaatatccccatgttaaagacatttgggtgacc 1851

                                                                        
Query: 184  tacctcacaaagtttgtaacaaggtaccagcgaagcaagttagagcgggcaagagagctg 243
            ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 1852 tacctcacaaagtttgtaagaaggtatcagagaagcaagttagagcgggcaagagaactg 1911

                                                                        
Query: 244  ttcacggaagctgtcgaaaaggctccgccgcatgaaaagaaggccttatatttgcaatat 303
            |||   ||||||||| || ||||||| || || ||||||||||  || |||||||| |||
Sbjct: 1912 ttcgatgaagctgtcaaacaggctcctccacaagaaaagaaggtattgtatttgcagtat 1971

                                                              
Query: 304  gctaaactggaagaggactatggcctcgcaaaacgtgccatgaatgtata 353
            ||||| ||||| || ||||||||||| || |||||||| |||||||||||
Sbjct: 1972 gctaagctggaggaagactatggccttgcgaaacgtgcaatgaatgtata 2021

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>ref|XM_506511.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1458_B07.103 mRNA
          Length = 3057

 Score =  329 bits (166), Expect = 4e-87
 Identities = 304/350 (86%)
 Strand = Plus / Plus

                                                                        
Query: 4    ttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaactcctcaa 63
            |||||| |||| || || ||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct: 1674 ttggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccccaa 1733

                                                                        
Query: 64   ataattcttaattatgcgttccttcttgaggagaacaagtatttcgaagatgcatttaaa 123
            ||| |||| |||||||| |  ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1734 atagttctcaattatgcatatcttcttgaggaaaacaagtatttcgaagatgcgtttaaa 1793

                                                                        
Query: 124  gtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggatatttgggtgacc 183
            ||||||||  | ||||| ||||| || || |||||||||||||| || ||||||||||||
Sbjct: 1794 gtgtatgagcgtggtgtgaaaatttttaaatatccccatgttaaagacatttgggtgacc 1853

                                                                        
Query: 184  tacctcacaaagtttgtaacaaggtaccagcgaagcaagttagagcgggcaagagagctg 243
            ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 1854 tacctcacaaagtttgtaagaaggtatcagagaagcaagttagagcgggcaagagaactg 1913

                                                                        
Query: 244  ttcacggaagctgtcgaaaaggctccgccgcatgaaaagaaggccttatatttgcaatat 303
            |||   ||||||||| || ||||||| || || ||||||||||  || |||||||| |||
Sbjct: 1914 ttcgatgaagctgtcaaacaggctcctccacaagaaaagaaggtattgtatttgcagtat 1973

                                                              
Query: 304  gctaaactggaagaggactatggcctcgcaaaacgtgccatgaatgtata 353
            ||||| ||||| || ||||||||||| || |||||||| |||||||||||
Sbjct: 1974 gctaagctggaggaagactatggccttgcgaaacgtgcaatgaatgtata 2023

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>dbj|AK101483.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041F21, full
            insert sequence
          Length = 2990

 Score =  329 bits (166), Expect = 4e-87
 Identities = 304/350 (86%)
 Strand = Plus / Plus

                                                                        
Query: 4    ttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaactcctcaa 63
            |||||| |||| || || ||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct: 1672 ttggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccccaa 1731

                                                                        
Query: 64   ataattcttaattatgcgttccttcttgaggagaacaagtatttcgaagatgcatttaaa 123
            ||| |||| |||||||| |  ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1732 atagttctcaattatgcatatcttcttgaggaaaacaagtatttcgaagatgcgtttaaa 1791

                                                                        
Query: 124  gtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggatatttgggtgacc 183
            ||||||||  | ||||| ||||| || || |||||||||||||| || ||||||||||||
Sbjct: 1792 gtgtatgagcgtggtgtgaaaatttttaaatatccccatgttaaagacatttgggtgacc 1851

                                                                        
Query: 184  tacctcacaaagtttgtaacaaggtaccagcgaagcaagttagagcgggcaagagagctg 243
            ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 1852 tacctcacaaagtttgtaagaaggtatcagagaagcaagttagagcgggcaagagaactg 1911

                                                                        
Query: 244  ttcacggaagctgtcgaaaaggctccgccgcatgaaaagaaggccttatatttgcaatat 303
            |||   ||||||||| || ||||||| || || ||||||||||  || |||||||| |||
Sbjct: 1912 ttcgatgaagctgtcaaacaggctcctccacaagaaaagaaggtattgtatttgcagtat 1971

                                                              
Query: 304  gctaaactggaagaggactatggcctcgcaaaacgtgccatgaatgtata 353
            ||||| ||||| || ||||||||||| || |||||||| |||||||||||
Sbjct: 1972 gctaagctggaggaagactatggccttgcgaaacgtgcaatgaatgtata 2021

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>dbj|AK066726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K22, full
            insert sequence
          Length = 3056

 Score =  329 bits (166), Expect = 4e-87
 Identities = 304/350 (86%)
 Strand = Plus / Plus

                                                                        
Query: 4    ttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaactcctcaa 63
            |||||| |||| || || ||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct: 1673 ttggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccccaa 1732

                                                                        
Query: 64   ataattcttaattatgcgttccttcttgaggagaacaagtatttcgaagatgcatttaaa 123
            ||| |||| |||||||| |  ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1733 atagttctcaattatgcatatcttcttgaggaaaacaagtatttcgaagatgcgtttaaa 1792

                                                                        
Query: 124  gtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggatatttgggtgacc 183
            ||||||||  | ||||| ||||| || || |||||||||||||| || ||||||||||||
Sbjct: 1793 gtgtatgagcgtggtgtgaaaatttttaaatatccccatgttaaagacatttgggtgacc 1852

                                                                        
Query: 184  tacctcacaaagtttgtaacaaggtaccagcgaagcaagttagagcgggcaagagagctg 243
            ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 1853 tacctcacaaagtttgtaagaaggtatcagagaagcaagttagagcgggcaagagaactg 1912

                                                                        
Query: 244  ttcacggaagctgtcgaaaaggctccgccgcatgaaaagaaggccttatatttgcaatat 303
            |||   ||||||||| || ||||||| || || ||||||||||  || |||||||| |||
Sbjct: 1913 ttcgatgaagctgtcaaacaggctcctccacaagaaaagaaggtattgtatttgcagtat 1972

                                                              
Query: 304  gctaaactggaagaggactatggcctcgcaaaacgtgccatgaatgtata 353
            ||||| ||||| || ||||||||||| || |||||||| |||||||||||
Sbjct: 1973 gctaagctggaggaagactatggccttgcgaaacgtgcaatgaatgtata 2022

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  188 bits (95), Expect = 8e-45
 Identities = 140/155 (90%)
 Strand = Plus / Minus

                                                                            
Query: 92       aggagaacaagtatttcgaagatgcatttaaagtgtatgaaagaggtgtaaaaatattca 151
                |||| |||||||||||||||||||| ||||||||||||||  | ||||| ||||| || |
Sbjct: 26768158 aggaaaacaagtatttcgaagatgcgtttaaagtgtatgagcgtggtgtgaaaattttta 26768099

                                                                            
Query: 152      agtatccccatgttaaggatatttgggtgacctacctcacaaagtttgtaacaaggtacc 211
                | |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
Sbjct: 26768098 aatatccccatgttaaagacatttgggtgacctacctcacaaagtttgtaagaaggtatc 26768039

                                                   
Query: 212      agcgaagcaagttagagcgggcaagagagctgttc 246
                || ||||||||||||||||||||||||| ||||||
Sbjct: 26768038 agagaagcaagttagagcgggcaagagaactgttc 26768004



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 4        ttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaactcctcaa 63
                |||||| |||| || || ||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct: 26768338 ttggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccccaa 26768279

                                               
Query: 64       ataattcttaattatgcgttccttcttgagg 94
                ||| |||| |||||||| |  ||||||||||
Sbjct: 26768278 atagttctcaattatgcatatcttcttgagg 26768248



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 263      aggctccgccgcatgaaaagaaggccttatatttgcaatatgctaaactggaagaggact 322
                ||||||| || || ||||||||||  || |||||||| |||||||| ||||| || ||||
Sbjct: 26767403 aggctcctccacaagaaaagaaggtattgtatttgcagtatgctaagctggaggaagact 26767344

                                               
Query: 323      atggcctcgcaaaacgtgccatgaatgtata 353
                ||||||| || |||||||| |||||||||||
Sbjct: 26767343 atggccttgcgaaacgtgcaatgaatgtata 26767313

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>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1003_C06
          Length = 143168

 Score =  188 bits (95), Expect = 8e-45
 Identities = 140/155 (90%)
 Strand = Plus / Minus

                                                                          
Query: 92     aggagaacaagtatttcgaagatgcatttaaagtgtatgaaagaggtgtaaaaatattca 151
              |||| |||||||||||||||||||| ||||||||||||||  | ||||| ||||| || |
Sbjct: 115015 aggaaaacaagtatttcgaagatgcgtttaaagtgtatgagcgtggtgtgaaaattttta 114956

                                                                          
Query: 152    agtatccccatgttaaggatatttgggtgacctacctcacaaagtttgtaacaaggtacc 211
              | |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
Sbjct: 114955 aatatccccatgttaaagacatttgggtgacctacctcacaaagtttgtaagaaggtatc 114896

                                                 
Query: 212    agcgaagcaagttagagcgggcaagagagctgttc 246
              || ||||||||||||||||||||||||| ||||||
Sbjct: 114895 agagaagcaagttagagcgggcaagagaactgttc 114861



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                          
Query: 4      ttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaactcctcaa 63
              |||||| |||| || || ||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct: 115195 ttggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccccaa 115136

                                             
Query: 64     ataattcttaattatgcgttccttcttgagg 94
              ||| |||| |||||||| |  ||||||||||
Sbjct: 115135 atagttctcaattatgcatatcttcttgagg 115105



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                          
Query: 263    aggctccgccgcatgaaaagaaggccttatatttgcaatatgctaaactggaagaggact 322
              ||||||| || || ||||||||||  || |||||||| |||||||| ||||| || ||||
Sbjct: 114260 aggctcctccacaagaaaagaaggtattgtatttgcagtatgctaagctggaggaagact 114201

                                             
Query: 323    atggcctcgcaaaacgtgccatgaatgtata 353
              ||||||| || |||||||| |||||||||||
Sbjct: 114200 atggccttgcgaaacgtgcaatgaatgtata 114170

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>dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1458_B07
          Length = 99415

 Score =  188 bits (95), Expect = 8e-45
 Identities = 140/155 (90%)
 Strand = Plus / Minus

                                                                         
Query: 92    aggagaacaagtatttcgaagatgcatttaaagtgtatgaaagaggtgtaaaaatattca 151
             |||| |||||||||||||||||||| ||||||||||||||  | ||||| ||||| || |
Sbjct: 14332 aggaaaacaagtatttcgaagatgcgtttaaagtgtatgagcgtggtgtgaaaattttta 14273

                                                                         
Query: 152   agtatccccatgttaaggatatttgggtgacctacctcacaaagtttgtaacaaggtacc 211
             | |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
Sbjct: 14272 aatatccccatgttaaagacatttgggtgacctacctcacaaagtttgtaagaaggtatc 14213

                                                
Query: 212   agcgaagcaagttagagcgggcaagagagctgttc 246
             || ||||||||||||||||||||||||| ||||||
Sbjct: 14212 agagaagcaagttagagcgggcaagagaactgttc 14178



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                         
Query: 4     ttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaactcctcaa 63
             |||||| |||| || || ||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct: 14512 ttggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccccaa 14453

                                            
Query: 64    ataattcttaattatgcgttccttcttgagg 94
             ||| |||| |||||||| |  ||||||||||
Sbjct: 14452 atagttctcaattatgcatatcttcttgagg 14422



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                         
Query: 263   aggctccgccgcatgaaaagaaggccttatatttgcaatatgctaaactggaagaggact 322
             ||||||| || || ||||||||||  || |||||||| |||||||| ||||| || ||||
Sbjct: 13577 aggctcctccacaagaaaagaaggtattgtatttgcagtatgctaagctggaggaagact 13518

                                            
Query: 323   atggcctcgcaaaacgtgccatgaatgtata 353
             ||||||| || |||||||| |||||||||||
Sbjct: 13517 atggccttgcgaaacgtgcaatgaatgtata 13487

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>ref|NM_122757.2| Arabidopsis thaliana unknown protein AT5G28740 mRNA, complete cds
          Length = 2893

 Score =  131 bits (66), Expect = 2e-27
 Identities = 153/182 (84%)
 Strand = Plus / Plus

                                                                        
Query: 19   gctgtttatgagagaatattagatttaagaattgcaactcctcaaataattcttaattat 78
            ||||| ||||||| |||||| ||||| ||||| || || |||||||| ||  | ||||||
Sbjct: 1606 gctgtctatgagaaaatattggatttgagaatagctacacctcaaattataatgaattat 1665

                                                                        
Query: 79   gcgttccttcttgaggagaacaagtatttcgaagatgcatttaaagtgtatgaaagaggt 138
            || || ||||||||||| || ||||| || |||||||| || || |||||||||||||||
Sbjct: 1666 gcttttcttcttgaggaaaataagtactttgaagatgcgttcaaggtgtatgaaagaggt 1725

                                                                        
Query: 139  gtaaaaatattcaagtatccccatgttaaggatatttgggtgacctacctcacaaagttt 198
            || || |||||||||||||| ||||| || || |||||||| ||||| || |||||||||
Sbjct: 1726 gtcaagatattcaagtatcctcatgtgaaagacatttgggtaacctatcttacaaagttt 1785

              
Query: 199  gt 200
            ||
Sbjct: 1786 gt 1787

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>gb|AF262041.1|T32B20 Arabidopsis thaliana BAC T32B20
          Length = 81877

 Score =  131 bits (66), Expect = 2e-27
 Identities = 153/182 (84%)
 Strand = Plus / Plus

                                                                         
Query: 19    gctgtttatgagagaatattagatttaagaattgcaactcctcaaataattcttaattat 78
             ||||| ||||||| |||||| ||||| ||||| || || |||||||| ||  | ||||||
Sbjct: 20242 gctgtctatgagaaaatattggatttgagaatagctacacctcaaattataatgaattat 20301

                                                                         
Query: 79    gcgttccttcttgaggagaacaagtatttcgaagatgcatttaaagtgtatgaaagaggt 138
             || || ||||||||||| || ||||| || |||||||| || || |||||||||||||||
Sbjct: 20302 gcttttcttcttgaggaaaataagtactttgaagatgcgttcaaggtgtatgaaagaggt 20361

                                                                         
Query: 139   gtaaaaatattcaagtatccccatgttaaggatatttgggtgacctacctcacaaagttt 198
             || || |||||||||||||| ||||| || || |||||||| ||||| || |||||||||
Sbjct: 20362 gtcaagatattcaagtatcctcatgtgaaagacatttgggtaacctatcttacaaagttt 20421

               
Query: 199   gt 200
             ||
Sbjct: 20422 gt 20423

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>emb|AL442644.7| Human DNA sequence from clone RP11-342F21 on chromosome 9 Contains a
             novel pseudogene, and the 5' end of a novel gene, complete
             sequence
          Length = 160264

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 25    tatgagagaatattagatttaa 46
             ||||||||||||||||||||||
Sbjct: 79879 tatgagagaatattagatttaa 79900

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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     tatgaaagaggtgtaaaaat 146
               ||||||||||||||||||||
Sbjct: 1156975 tatgaaagaggtgtaaaaat 1156956

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>gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete
             sequence
          Length = 250713

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tatccccatgttaaggatat 173
             ||||||||||||||||||||
Sbjct: 50723 tatccccatgttaaggatat 50742

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>emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chromosome 9p22.1-23 Contains
              a ribosomal protein S12 (RPS12) pseudogene, 2 novel genes,
              the 5' end of a variant of the PTPRD gene for protein
              tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD).
              and a CpG island, complete sequence
          Length = 176273

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    gtgacctacctcacaaagtt 197
              ||||||||||||||||||||
Sbjct: 164545 gtgacctacctcacaaagtt 164526

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>emb|AL035454.18|HS1002M8 Human DNA sequence from clone RP5-1002M8 on chromosome 20p11.21-11.23
             Contains the 3' end of the NAT5 gene for
             N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae), the
             CRNKL1 gene for crooked neck-like 1 (Drosophila) (Crn),
             the 5' end of the C20orf26 gene for chromosome 20 open
             reading frame 26 (C20orf26) and a CpG island, complete
             sequence
          Length = 111768

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    gttccttcttgaggagaaca 100
             ||||||||||||||||||||
Sbjct: 51222 gttccttcttgaggagaaca 51203

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>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence
          Length = 188519

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    ggtgtaaaaatattcaagta 155
              ||||||||||||||||||||
Sbjct: 101932 ggtgtaaaaatattcaagta 101951

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>emb|Z99124.2|BSUB0021 Bacillus subtilis complete genome (section 21 of 21): from 4010730 to
              4214630
          Length = 203901

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    aaaagaaggccttatatttg 297
              ||||||||||||||||||||
Sbjct: 170291 aaaagaaggccttatatttg 170310

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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     tgaggagaacaagtatttcgaaga 113
              |||||||||||||||||| |||||
Sbjct: 483575 tgaggagaacaagtattttgaaga 483598

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>emb|CR338923.2| Gallus gallus finished cDNA, clone ChEST979j24
          Length = 1302

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 82  ttccttcttgaggagaacaagtat 105
           ||||||||||||||||||| ||||
Sbjct: 266 ttccttcttgaggagaacacgtat 289

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>ref|XM_345418.2| PREDICTED: Rattus norvegicus aquarius (predicted) (Aqr_predicted),
           mRNA
          Length = 6843

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 aggccttatatttgcaatat 303
           ||||||||||||||||||||
Sbjct: 103 aggccttatatttgcaatat 122

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>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence
          Length = 144792

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    aaaaatattcaagtatccccatgt 164
              ||||||||||||||||| ||||||
Sbjct: 113253 aaaaatattcaagtatcaccatgt 113276

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>emb|CR376843.11| Zebrafish DNA sequence from clone CH211-284N15 in linkage group 19,
             complete sequence
          Length = 75162

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   catgttaaggatatttgggt 179
             ||||||||||||||||||||
Sbjct: 32572 catgttaaggatatttgggt 32553

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>gb|AF074834.1|AF074834 Campylobacter jejuni strain JEO2759 (16-1 b) tRNA-Ala and tRNA-Ile
           genes, complete sequence
          Length = 752

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  agagaatattagatttaaga 48
           ||||||||||||||||||||
Sbjct: 564 agagaatattagatttaaga 583

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>gb|AF074832.1|AF074832 Campylobacter jejuni strain JEO2677 (3-1 a) tRNA-Ala and tRNA-Ile
           genes, complete sequence
          Length = 751

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  agagaatattagatttaaga 48
           ||||||||||||||||||||
Sbjct: 563 agagaatattagatttaaga 582

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>gb|AF074830.1|AF074830 Campylobacter jejuni strain KJ7 tRNA-Ala and tRNA-Ile genes,
           complete sequence
          Length = 751

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  agagaatattagatttaaga 48
           ||||||||||||||||||||
Sbjct: 563 agagaatattagatttaaga 582

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>gb|AF074829.1|AF074829 Campylobacter jejuni strain NCTC11392 tRNA-Ala and tRNA-Ile genes,
           complete sequence
          Length = 664

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  agagaatattagatttaaga 48
           ||||||||||||||||||||
Sbjct: 476 agagaatattagatttaaga 495

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>dbj|D26185.1|BAC180K B. subtilis DNA, 180 kilobase region of replication origin
          Length = 180136

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   aaaagaaggccttatatttg 297
             ||||||||||||||||||||
Sbjct: 29992 aaaagaaggccttatatttg 30011


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,333,295
Number of Sequences: 3902068
Number of extensions: 3333295
Number of successful extensions: 59936
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59840
Number of HSP's gapped (non-prelim): 96
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result